Cleavage site for pathogenic type III effector avirulence factor Avr
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G40645 |
| fragaria_vesca | FvH4_5g07230 FvH4_5g07230 FvH4_6g52270 |
| malus_domestica | MD06G1158600.v1.1 MD09G1019200.v1.1 MD14G1165000.v1.1 MD17G1019800.v1.1 |
| prunus_persica | Prupe.3G297800_v2.0.a1 Prupe.5G158200_v2.0.a1 |
| pyrus_communis | pycom06g14150 pycom17g01640 |
| rosa_chinensis | RchiOBHm_Chr7g0191421 |
| rosa_laevigata | RLG00000022224 |
| rosa_multiflora | Rmu_sc0003188.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00078610 Rroxscaffold_3G00263830 |
| rosa_rugosa | Rorug02G0572900.1 |
| rosa_samantha | Rh2AG651900 Rh2BG662700 Rh2CG627300 Rh2DG677800 Rh7AG118100 Rh7BG120200 Rh7CG123000 Rh7DG121100 |
| rosa_wichuraiana | Rw2G053530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 35 |
| AcuI | CTGAAG | 1 cut(s) | 93 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 38, 137 |
| AjnI | CCWGG | 1 cut(s) | 130 |
| AluBI | AGCT | 2 cut(s) | 71, 101 |
| AluI | AGCT | 2 cut(s) | 71, 101 |
| Alw26I | GTCTC | 1 cut(s) | 99 |
| ApeKI | GCWGC | 1 cut(s) | 201 |
| ApoI | RAATTY | 1 cut(s) | 35 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 145 |
| BanII | GRGCYC | 1 cut(s) | 130 |
| BbvI | GCAGC | 1 cut(s) | 188 |
| BciT130I | CCWGG | 1 cut(s) | 132 |
| BcoDI | GTCTC | 1 cut(s) | 99 |
| BfaI | CTAG | 1 cut(s) | 102 |
| BisI | GCNGC | 1 cut(s) | 202 |
| BlsI | GCNGC | 1 cut(s) | 203 |
| Bme1390I | CCNGG | 1 cut(s) | 132 |
| BmiI | GGNNCC | 1 cut(s) | 129 |
| BmrFI | CCNGG | 1 cut(s) | 132 |
| BmsI | GCATC | 2 cut(s) | 14, 74 |
| BsaI | GGTCTC | 1 cut(s) | 99 |
| BsaJI | CCNNGG | 1 cut(s) | 131 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 38, 137 |
| Bse1I | ACTGG | 1 cut(s) | 142 |
| BseBI | CCWGG | 1 cut(s) | 132 |
| BseDI | CCNNGG | 1 cut(s) | 131 |
| BseGI | GGATG | 1 cut(s) | 55 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 38, 137 |
| BseNI | ACTGG | 1 cut(s) | 142 |
| BseXI | GCAGC | 1 cut(s) | 188 |
| Bsh1285I | CGRYCG | 1 cut(s) | 26 |
| BsiEI | CGRYCG | 1 cut(s) | 26 |
| BslFI | GGGAC | 1 cut(s) | 148 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 38, 137 |
| BsmAI | GTCTC | 1 cut(s) | 99 |
| BsmFI | GGGAC | 1 cut(s) | 148 |
| Bso31I | GGTCTC | 1 cut(s) | 99 |
| Bsp1286I | GDGCHC | 1 cut(s) | 130 |
| BspLI | GGNNCC | 1 cut(s) | 129 |
| BspTNI | GGTCTC | 1 cut(s) | 99 |
| BsrI | ACTGG | 1 cut(s) | 142 |
| BssECI | CCNNGG | 1 cut(s) | 131 |
| Bst2UI | CCWGG | 1 cut(s) | 132 |
| Bst4CI | ACNGT | 2 cut(s) | 27, 85 |
| BstF5I | GGATG | 1 cut(s) | 55 |
| BstMAI | GTCTC | 1 cut(s) | 99 |
| BstMCI | CGRYCG | 1 cut(s) | 26 |
| BstNI | CCWGG | 1 cut(s) | 132 |
| BstNSI | RCATGY | 1 cut(s) | 208 |
| BstSCI | CCNGG | 1 cut(s) | 130 |
| BstV1I | GCAGC | 1 cut(s) | 188 |
| BtsCI | GGATG | 1 cut(s) | 55 |
| CviAII | CATG | 1 cut(s) | 205 |
| CviJI | RGCY | 3 cut(s) | 71, 101, 128 |
| CviKI_1 | RGCY | 3 cut(s) | 71, 101, 128 |
| Eco24I | GRGCYC | 1 cut(s) | 130 |
| Eco31I | GGTCTC | 1 cut(s) | 99 |
| Eco57I | CTGAAG | 1 cut(s) | 93 |
| EcoRII | CCWGG | 1 cut(s) | 130 |
| EcoT38I | GRGCYC | 1 cut(s) | 130 |
| FaeI | CATG | 1 cut(s) | 208 |
| FaiI | YATR | 1 cut(s) | 206 |
| FaqI | GGGAC | 1 cut(s) | 148 |
| FatI | CATG | 1 cut(s) | 204 |
| Fnu4HI | GCNGC | 1 cut(s) | 202 |
| FokI | GGATG | 1 cut(s) | 62 |
| FriOI | GRGCYC | 1 cut(s) | 130 |
| Fsp4HI | GCNGC | 1 cut(s) | 202 |
| FspBI | CTAG | 1 cut(s) | 102 |
| GluI | GCNGC | 1 cut(s) | 202 |
| Hin1II | CATG | 1 cut(s) | 208 |
| HpyAV | CCTTC | 2 cut(s) | 68, 156 |
| HpyCH4III | ACNGT | 2 cut(s) | 27, 85 |
| HpyCH4V | TGCA | 2 cut(s) | 65, 204 |
| Hsp92II | CATG | 1 cut(s) | 208 |
| LmnI | GCTCC | 1 cut(s) | 133 |
| LpnPI | CCDG | 7 cut(s) | 75, 117, 122, 123, 144, 171, 195 |
| Lsp1109I | GCAGC | 1 cut(s) | 188 |
| LweI | GCATC | 2 cut(s) | 14, 74 |
| MaeI | CTAG | 1 cut(s) | 102 |
| MboII | GAAGA | 1 cut(s) | 124 |
| MhlI | GDGCHC | 1 cut(s) | 130 |
| MluCI | AATT | 1 cut(s) | 35 |
| MroXI | GAANNNNTTC | 1 cut(s) | 145 |
| MspA1I | CMGCKG | 1 cut(s) | 71 |
| MspR9I | CCNGG | 1 cut(s) | 132 |
| MvaI | CCWGG | 1 cut(s) | 132 |
| NlaIII | CATG | 1 cut(s) | 208 |
| NlaIV | GGNNCC | 1 cut(s) | 129 |
| NspI | RCATGY | 1 cut(s) | 208 |
| PdmI | GAANNNNTTC | 1 cut(s) | 145 |
| PkrI | GCNGC | 1 cut(s) | 203 |
| Psp6I | CCWGG | 1 cut(s) | 130 |
| PspGI | CCWGG | 1 cut(s) | 130 |
| PspN4I | GGNNCC | 1 cut(s) | 129 |
| PvuII | CAGCTG | 1 cut(s) | 71 |
| SatI | GCNGC | 1 cut(s) | 202 |
| ScrFI | CCNGG | 1 cut(s) | 132 |
| SduI | GDGCHC | 1 cut(s) | 130 |
| SetI | ASST | 4 cut(s) | 73, 79, 103, 148 |
| SfaNI | GCATC | 2 cut(s) | 14, 74 |
| SgeI | CNNG | 9 cut(s) | 23, 74, 114, 121, 143, 144, 150, 170, 194 |
| Sse9I | AATT | 1 cut(s) | 35 |
| SspMI | CTAG | 1 cut(s) | 102 |
| StyD4I | CCNGG | 1 cut(s) | 130 |
| TaaI | ACNGT | 2 cut(s) | 27, 85 |
| TasI | AATT | 1 cut(s) | 35 |
| TseI | GCWGC | 1 cut(s) | 201 |
| TspDTI | ATGAA | 1 cut(s) | 138 |
| XapI | RAATTY | 1 cut(s) | 35 |
| XceI | RCATGY | 1 cut(s) | 208 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 189 |
| XmnI | GAANNNNTTC | 1 cut(s) | 145 |
| XspI | CTAG | 1 cut(s) | 102 |