pycom06g14150

RPM1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0005964
Physical Location & Seq
Forward (+)
19006463 .. 19007749
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g14150.2

Sequence Viewer

Length: 339 bp
ATGCGCACCATTCTCTCTCTTTCGATCTCCCCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCCAGTCTGTCTGCACCATTCCCCTTTCTATTATCTTTTCCTGTAAAACTTCCTCCTCCAAACCATCAGGTCGGGCAGATCCTGCCTTCCTCCATCATGGCTTCGCAGGATAAAGGTCGACCGTTGCCGAAATTCGGGGAATGGGATGTAAACAACCCAGCTTCAGCTGAAGGATTTACTGTTATATTCAACAAGGCCAGAGATGACAAGAAGACCAGTGCGGCTCAAGTGAAGATCGATCACCCCACGAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AvrRpt-cleavage

Protein Analysis

113

Amino Acids

12.11

Weight (kDa)

9.9

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccI GTMKAC 1 cut(s) 199
AciI CCGC 1 cut(s) 302
AclWI GGATC 1 cut(s) 154
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 2 cut(s) 228, 270
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 1 cut(s) 271
AluBI AGCT 2 cut(s) 242, 248
AluI AGCT 2 cut(s) 242, 248
AlwI GGATC 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 163
AoxI GGCC 1 cut(s) 276
ApoI RAATTY 1 cut(s) 212
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 299
BccI CCATC 2 cut(s) 153, 182
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 318
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 2 cut(s) 84, 297
BseCI ATCGAT 1 cut(s) 318
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 215
BseNI ACTGG 2 cut(s) 84, 297
BseRI GAGGAG 1 cut(s) 126
BseYI CCCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 203
BshFI GGCC 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 215
BsnI GGCC 1 cut(s) 278
Bsp143I GATC 4 cut(s) 24, 159, 315, 319
BspACI CCGC 1 cut(s) 302
BspANI GGCC 1 cut(s) 278
BspDI ATCGAT 1 cut(s) 318
BspPI GGATC 1 cut(s) 154
BsrI ACTGG 2 cut(s) 84, 297
BssMI GATC 4 cut(s) 24, 159, 315, 319
Bst4CI ACNGT 2 cut(s) 204, 262
BstAPI GCANNNNNTGC 1 cut(s) 163
BstF5I GGATG 1 cut(s) 232
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 4 cut(s) 27, 162, 318, 322
BstMBI GATC 4 cut(s) 24, 159, 315, 319
BstMCI CGRYCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
Bsu15I ATCGAT 1 cut(s) 318
BsuRI GGCC 1 cut(s) 278
BsuTUI ATCGAT 1 cut(s) 318
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 304
CaiI CAGNNNCTG 1 cut(s) 163
CfoI GCGC 1 cut(s) 6
ClaI ATCGAT 1 cut(s) 318
CviAII CATG 1 cut(s) 178
CviJI RGCY 5 cut(s) 182, 242, 248, 278, 305
CviKI_1 RGCY 5 cut(s) 182, 242, 248, 278, 305
DpnI GATC 4 cut(s) 26, 161, 317, 321
DpnII GATC 4 cut(s) 24, 159, 315, 319
Eco57I CTGAAG 2 cut(s) 228, 270
FaeI CATG 1 cut(s) 181
FaiI YATR 2 cut(s) 179, 266
FatI CATG 1 cut(s) 177
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 303
FspAI RTGCGCAY 1 cut(s) 5
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 303
GsaI CCCAGC 1 cut(s) 242
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 1 cut(s) 278
HhaI GCGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 181
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 200
HindII GTYRAC 1 cut(s) 200
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 2 cut(s) 200, 232
Hpy8I GTNNAC 2 cut(s) 200, 232
HpyAV CCTTC 2 cut(s) 177, 245
HpyCH4III ACNGT 2 cut(s) 204, 262
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
Hsp92II CATG 1 cut(s) 181
HspAI GCGC 1 cut(s) 4
Kzo9I GATC 4 cut(s) 24, 159, 315, 319
LpnPI CCDG 8 cut(s) 97, 134, 135, 173, 176, 252, 292, 310
MalI GATC 4 cut(s) 26, 161, 317, 321
MboI GATC 4 cut(s) 24, 159, 315, 319
MboII GAAGA 2 cut(s) 304, 325
MflI RGATCY 1 cut(s) 159
MluCI AATT 1 cut(s) 212
MnlI CCTC 4 cut(s) 47, 144, 147, 181
MspA1I CMGCKG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeII GATC 4 cut(s) 24, 159, 315, 319
NlaIII CATG 1 cut(s) 181
NsbI TGCGCA 1 cut(s) 5
PkrI GCNGC 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 163
PsuI RGATCY 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 248
SalI GTCGAC 1 cut(s) 198
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 4 cut(s) 24, 159, 315, 319
SetI ASST 4 cut(s) 153, 199, 244, 250
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
Sse9I AATT 1 cut(s) 212
SsiI CCGC 1 cut(s) 302
TaaI ACNGT 2 cut(s) 204, 262
TaqI TCGA 3 cut(s) 23, 199, 318
TasI AATT 1 cut(s) 212
TauI GCSGC 1 cut(s) 305
TscAI CASTG 1 cut(s) 304
TspRI CASTG 1 cut(s) 304
XapI RAATTY 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.