Rh7CG123000

RPM1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005964
Physical Location & Seq
Forward (+)
9547914 .. 9549900
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG123000.1

Sequence Viewer

Length: 258 bp
ATGGCTTCGCAGGATAAAGGTCGGCCCTTACCTAAATTTGGTGAGTGGGATGTAAATAACCCAGCATCAGCTGAAGGATTTACTGTCATATTCAACAAGGCCCGAGATGATAAGAAGACCAATGCGTCTCATCCTAATATTGTGACCCCACGAAAAGGCGATAGCAGCGTACGAAGAGGTACTAAATACAACAATGACTACCACGTCGACAATTATCCTCAATATCCCCAAAAGAAGAAGTGGTTTTGCTGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AvrRpt-cleavage

Protein Analysis

85

Amino Acids

9.72

Weight (kDa)

9.52

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AvrRpt-cleavage PF05627 6 - 39 1.7e-19 Cleavage site for pathogenic type III effector avirulence factor Avr
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 124, 203
AccI GTMKAC 1 cut(s) 207
AcsI RAATTY 1 cut(s) 35
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 2 cut(s) 171, 181
AfiI CCNNNNNNNGG 2 cut(s) 38, 155
AgsI TTSAA 1 cut(s) 94
AjiI CACGTC 1 cut(s) 205
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 132
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 2 cut(s) 23, 99
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 35
AspS9I GGNCC 2 cut(s) 24, 100
AsuHPI GGTGA 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 132
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 102
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 2 cut(s) 24, 100
BmsI GCATC 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 122
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 155
BseGI GGATG 2 cut(s) 55, 130
BseLI CCNNNNNNNGG 2 cut(s) 38, 155
BseXI GCAGC 1 cut(s) 177
BseYI CCCAGC 1 cut(s) 61
BshFI GGCC 2 cut(s) 25, 101
BsiHKCI CYCGRG 1 cut(s) 102
BsiWI CGTACG 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 38, 155
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsnI GGCC 2 cut(s) 25, 101
BsoBI CYCGRG 1 cut(s) 102
BspANI GGCC 2 cut(s) 25, 101
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 169
BstF5I GGATG 2 cut(s) 55, 130
BstMAI GTCTC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 177
BstV2I GAAGAC 1 cut(s) 122
BsuRI GGCC 2 cut(s) 25, 101
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 2 cut(s) 55, 130
Cfr13I GGNCC 2 cut(s) 24, 100
CseI GACGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 170, 180
CviJI RGCY 4 cut(s) 5, 25, 71, 101
CviKI_1 RGCY 4 cut(s) 5, 25, 71, 101
CviQI GTAC 2 cut(s) 170, 180
DrdI GACNNNNNNGTC 2 cut(s) 124, 203
DseDI GACNNNNNNGTC 2 cut(s) 124, 203
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 132
FaiI YATR 1 cut(s) 89
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 166
FokI GGATG 2 cut(s) 62, 117
Fsp4HI GCNGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 166
GsaI CCCAGC 1 cut(s) 65
HaeIII GGCC 2 cut(s) 25, 101
HgaI GACGC 1 cut(s) 114
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 208
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 204
LpnPI CCDG 1 cut(s) 75
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 1 cut(s) 74
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 142
MboII GAAGA 3 cut(s) 127, 186, 247
MluCI AATT 2 cut(s) 35, 211
MnlI CCTC 2 cut(s) 170, 228
MspA1I CMGCKG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 142
Pfl23II CGTACG 1 cut(s) 169
PkrI GCNGC 1 cut(s) 167
PspFI CCCAGC 1 cut(s) 61
PspLI CGTACG 1 cut(s) 169
PspPI GGNCC 2 cut(s) 24, 100
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 2 cut(s) 171, 181
RsaNI GTAC 2 cut(s) 170, 180
SalI GTCGAC 1 cut(s) 206
SatI GCNGC 1 cut(s) 166
Sau96I GGNCC 2 cut(s) 24, 100
SetI ASST 5 cut(s) 22, 34, 73, 181, 207
SfaNI GCATC 1 cut(s) 74
SgeI CNNG 7 cut(s) 23, 74, 109, 114, 116, 162, 215
Sse9I AATT 2 cut(s) 35, 211
SspI AATATT 1 cut(s) 139
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 207
TasI AATT 2 cut(s) 35, 211
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 1 cut(s) 142
XapI RAATTY 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.