Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0005455

Physical Location & Seq

Genomic Coordinates Forward (+)

30169334 .. 30173111

Gene Structure 3778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1160400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1956 bp

ATGTCCGAACAAAACGAGCCTCAGCAGCCATACCCAGCCGCAAAGAGCTCAAAGCCGCCGCCACAGCCACCGAAACCCGCCGCTTTCTCCGCCAATCTCAACTCCGACCCTCCCGAAACAGACGGCGCAGCTCCCTCCACGTGTCAGCACCACCACACCTCCCCAGTCTTCTCTCTGCTTCCCCCTTACCCGAAATCCTCCGACGGGCAATCAGCAGTCAACGAAAGCATCGAAGCCGAAGGCAAACGATTGAGCAAGCTGGGAAAAAGCAGGTCGAGGAATTGCAAGGTGGACTGTGCAATGGATGATGGAGCTGATGCTGCCGATGGGTATCTTCCTGGTCAAGGAATTTCGTCGTCTCGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTGGTTCATGTGGCGAGGCGGATGCCCAAAAATGCCCATGCTCATTTTATACTGGGTTTGATGTATCAGAGATTGGGGCAGCCTTCAAAGGCAGTTTTGGCATATGAGAAGGCAGAAGAGATTTTGCTCCGCCCTGATGCAGAGATCGACAGGCGCGAGCTCCTTTCACTAGTTCAAATTCATCATGCGCAGTGCCTTATGCTAGAAACTTTGGGGGATGGTAGTTTCGACAAAGAACTTGAACCTCAAGAGCTTGATGTAATTAATTCCAAACTAAAGGAATCAATGCAATCAGATGTAAGACAAGCAGCTGTGTGGAATACCCTCGGCTTGATACTACTTAAGACTGGTCGTCTGCAGAGTGCAATTGCAGTTTTATCATCTCTGTTAGCTGTTGCCCCCGACAACTATGATTGTCTTGGAAACCTTGGGATTGCTTACCTTCAAAATGGAAATTTGGAACTTTCAGAAAAATGTTTTCAGGAGTTGATACTCAAAGATCAAAATCATCCTGCGGCCTTAATTAATTACGCTGCCCTCCTTTTATGTAGATATGGTTCGGTTGTTGCAGGTGCTGGGGCAAATGCTGGTGAAGGTGCTTCTGCAGATCACACTTCTGCTGTCAATGTTGCGAAGGAGTGTTTGTTTGCATCGCTAAAAGAGGATCCTAAAGCAGCACACGTGTTGGCTAATCTTGCTAATGCATATTATATGACCGGTGATCATAGAAATTCCAGCAAGTGCTTGGAGAAGGCGGCAAAACTGGAGGTCAATTGTTGTATGTCTACTCGATATGCTGTTGCAGTACACCGAATCAAGGATGCAGAAAGGTTTCAAGACCCTAGTGACCAAATTTCCTGGGCAGGAAATGAAATGGCTTCAATTATAAGAGATGGAGATTCTGTCTCGGTTGAACTTCCTATAGCGTGGGCAGGCCTTGCGATGGTGCACAAAGCCCAACATGAGATTGCATCAGCATTTGAAGCTGAACAGAATACCTTAATGGAGGTAGAAGAGCATGCTGATTATAGTTTAAAGCAGGCAGTAGCAGAGGATCCAGATGATGCTGTGCAATGGCACCAGCTTGGTCTCCATAGCTTATGTACTCAGCAATTCAAAGACTCACAAAAGTACCTCAAAGCTGCAGTTGCCCGTTTTAAAGAGTGCAGCTATGCATGGTCAAATCTAGGTATCTCACTGCAACTATCAGATGAGCCATCGCAATCTGAAGAAGTTTACAAGCGGGCTTTAGCATTGGCAACAACTAAACACGCCCACACTATATTCTCCAACCTTGGAAATCTCTACCGCCAGCAGAAGCACTACGAACGTGCCAAAGCAATGTTTACAAAGTCTCTAGAGCTCCAGCCAGGCTATGCTCCCGCATTTAACAACTTGGGTCTCGTATTTGTTGCCGAGGGTCAGTGGGAGGAAGCCAAATTCTGCTTTGACAAAGCCCTCCGGGCAGACCCGTTGCTGGATGCTGCCAAGTCCAACATGCTTAAAGCGGTGTCTGCATCAAGTTCATGTGCAGGCCTGTCCTCTAGTCTTCTTCAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035327 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_19 TPR_2 TPR_7 TPR_8

Protein Analysis

652

Amino Acids

70.91

Weight (kDa)

5.75

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	239 - 295	4.3e-06	Tetratricopeptide repeat
TPR_19	PF14559	244 - 304	3.3e-09	Tetratricopeptide repeat
TPR_12	PF13424	523 - 587	2.3e-08	Tetratricopeptide repeat
TPR_1	PF00515	560 - 590	2.3e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63200 AT5G63200
fragaria_vesca	FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030
malus_domestica	MD06G1160400.v1.1
prunus_persica	Prupe.5G160000_v2.0.a1
pyrus_communis	pycom06g14350
rosa_chinensis	RchiOBHm_Chr5g0027621 RchiOBHm_Chr5g0027631 RchiOBHm_Chr7g0191501
rosa_laevigata	RLG00000004443
rosa_multiflora	Rmu_co8226669.1_g000001 Rmu_sc0002661.1_g000013 Rmu_sc0010599.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438440 Rroxscaffold_3G00263740
rosa_rugosa	Rorug05G0100300 Rorug06G0510500
rosa_samantha	Rh5CG212600 Rh5DG194500 Rh7AG118900 Rh7BG121000 Rh7CG123700 Rh7DG121800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1280
AarI	CACCTGC	1 cut(s)	953
Acc16I	TGCGCA	1 cut(s)	582
Acc36I	ACCTGC	2 cut(s)	261, 953
AccB1I	GGYRCC	1 cut(s)	1470
AccI	GTMKAC	1 cut(s)	1178
AccII	CGCG	1 cut(s)	549
AclWI	GGATC	4 cut(s)	1052, 1065, 1442, 1455
AcsI	RAATTY	6 cut(s)	348, 570, 847, 1123, 1245, 1832
AcuI	CTGAAG	1 cut(s)	1641
AcvI	CACGTG	2 cut(s)	141, 1075
AfaI	GTAC	3 cut(s)	1200, 1498, 1526
AfiI	CCNNNNNNNGG	5 cut(s)	204, 344, 1210, 1336, 1870
AflII	CTTAAG	1 cut(s)	734
AflIII	ACRYGT	3 cut(s)	140, 1072, 1074
AgeI	ACCGGT	1 cut(s)	1109
AhdI	GACNNNNNGTC	1 cut(s)	744
AhlI	ACTAGT	1 cut(s)	562
AjnI	CCWGG	3 cut(s)	337, 1250, 1762
Alw21I	GWGCWC	4 cut(s)	50, 555, 1344, 1758
Alw26I	GTCTC	5 cut(s)	363, 1303, 1487, 1752, 1799
Alw44I	GTGCAC	1 cut(s)	1340
AlwI	GGATC	4 cut(s)	1052, 1065, 1442, 1455
AlwNI	CAGNNNCTG	1 cut(s)	968
AoxI	GGCC	3 cut(s)	909, 1327, 1927
ApaLI	GTGCAC	1 cut(s)	1340
ApoI	RAATTY	6 cut(s)	348, 570, 847, 1123, 1245, 1832
AseI	ATTAAT	2 cut(s)	657, 918
AsiGI	ACCGGT	1 cut(s)	1109
Asp700I	GAANNNNTTC	1 cut(s)	1224
AspLEI	GCGC	3 cut(s)	128, 549, 583
AsuC2I	CCSGG	1 cut(s)	1856
AsuHPI	GGTGA	2 cut(s)	995, 1124
BaeGI	GKGCMC	1 cut(s)	1344
BaeI	ACNNNNGTAYC	2 cut(s)	1508, 1541
BamHI	GGATCC	2 cut(s)	1057, 1447
BanI	GGYRCC	1 cut(s)	1470
BanII	GRGCYC	3 cut(s)	50, 555, 1758
BauI	CACGAG	1 cut(s)	360
BbrPI	CACGTG	2 cut(s)	141, 1075
BbsI	GAAGAC	2 cut(s)	160, 1934
Bbv12I	GWGCWC	4 cut(s)	50, 555, 1344, 1758
BbvCI	CCTCAGC	1 cut(s)	21
BccI	CCATC	6 cut(s)	302, 320, 605, 1280, 1330, 1618
BceAI	ACGGC	1 cut(s)	139
BcgI	CGANNNNNNTGC	2 cut(s)	397, 431
BciT130I	CCWGG	3 cut(s)	339, 1252, 1764
BclI	TGATCA	1 cut(s)	1114
BcnI	CCSGG	1 cut(s)	1856
BcoDI	GTCTC	5 cut(s)	363, 1303, 1487, 1752, 1799
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	6 cut(s)	563, 596, 1236, 1580, 1751, 1938
BfmI	CTRYAG	4 cut(s)	749, 996, 1314, 1536
BfrI	CTTAAG	1 cut(s)	734
BfuAI	ACCTGC	2 cut(s)	261, 953
BglI	GCCNNNNNGGC	1 cut(s)	1856
Bme1390I	CCNGG	4 cut(s)	339, 1252, 1764, 1856
BmeRI	GACNNNNNGTC	1 cut(s)	744
BmiI	GGNNCC	3 cut(s)	1059, 1449, 1472
BmrFI	CCNGG	4 cut(s)	339, 1252, 1764, 1856
BmrI	ACTGGG	2 cut(s)	158, 455
BmuI	ACTGGG	2 cut(s)	158, 455
BpiI	GAAGAC	2 cut(s)	160, 1934
BpmI	CTGGAG	2 cut(s)	1178, 1742
Bpu10I	CCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	624
BpuMI	CCSGG	1 cut(s)	1856
BsaAI	YACGTR	2 cut(s)	141, 1075
BsaBI	GATNNNNATC	2 cut(s)	330, 897
BsaI	GGTCTC	2 cut(s)	1487, 1799
BsaJI	CCNNGG	5 cut(s)	718, 820, 1251, 1687, 1809
BsaWI	WCCGGW	1 cut(s)	1109
BsaXI	ACNNNNNCTCC	6 cut(s)	143, 173, 1022, 1052, 1281, 1311
Bsc4I	CCNNNNNNNGG	5 cut(s)	204, 344, 1210, 1336, 1870
Bse118I	RCCGGY	1 cut(s)	1109
Bse1I	ACTGG	5 cut(s)	164, 394, 450, 745, 1161
Bse3DI	GCAATG	3 cut(s)	306, 1472, 1740
Bse8I	GATNNNNATC	2 cut(s)	330, 897
BseBI	CCWGG	3 cut(s)	339, 1252, 1764
BseDI	CCNNGG	5 cut(s)	718, 820, 1251, 1687, 1809
BseGI	GGATG	6 cut(s)	310, 420, 616, 901, 1219, 1879
BseJI	GATNNNNATC	2 cut(s)	330, 897
BseLI	CCNNNNNNNGG	5 cut(s)	204, 344, 1210, 1336, 1870
BseMI	GCAATG	3 cut(s)	306, 1472, 1740
BseMII	CTCAG	2 cut(s)	35, 1514
BseNI	ACTGG	5 cut(s)	164, 394, 450, 745, 1161
BseSI	GKGCMC	1 cut(s)	1344
BseYI	CCCAGC	3 cut(s)	34, 259, 968
BsgI	GTGCAG	2 cut(s)	1579, 1944
Bsh1236I	CGCG	1 cut(s)	549
BshFI	GGCC	3 cut(s)	911, 1329, 1929
BshNI	GGYRCC	1 cut(s)	1470
BshTI	ACCGGT	1 cut(s)	1109
BsiHKAI	GWGCWC	4 cut(s)	50, 555, 1344, 1758
BsiSI	CCGG	2 cut(s)	1110, 1855
BslI	CCNNNNNNNGG	5 cut(s)	204, 344, 1210, 1336, 1870
BsmAI	GTCTC	5 cut(s)	363, 1303, 1487, 1752, 1799
BsmBI	CGTCTC	1 cut(s)	363
BsnI	GGCC	3 cut(s)	911, 1329, 1929
Bso31I	GGTCTC	2 cut(s)	1487, 1799
Bsp1286I	GDGCHC	4 cut(s)	50, 555, 1344, 1758
Bsp143I	GATC	6 cut(s)	537, 892, 1000, 1057, 1114, 1447
BspANI	GGCC	3 cut(s)	911, 1329, 1929
BspCNI	CTCAG	2 cut(s)	34, 1513
BspFNI	CGCG	1 cut(s)	549
BspLI	GGNNCC	3 cut(s)	1059, 1449, 1472
BspMAI	CTGCAG	3 cut(s)	753, 1000, 1540
BspMI	ACCTGC	2 cut(s)	261, 953
BspPI	GGATC	4 cut(s)	1052, 1065, 1442, 1455
BspQI	GCTCTTC	1 cut(s)	1401
BspT107I	GGYRCC	1 cut(s)	1470
BspTI	CTTAAG	1 cut(s)	734
BspTNI	GGTCTC	2 cut(s)	1487, 1799
BsrDI	GCAATG	3 cut(s)	306, 1472, 1740
BsrFI	RCCGGY	1 cut(s)	1109
BsrI	ACTGG	5 cut(s)	164, 394, 450, 745, 1161
BssAI	RCCGGY	1 cut(s)	1109
BssECI	CCNNGG	5 cut(s)	718, 820, 1251, 1687, 1809
BssMI	GATC	6 cut(s)	537, 892, 1000, 1057, 1114, 1447
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	2 cut(s)	820, 1687
Bst2BI	CACGAG	1 cut(s)	360
Bst2UI	CCWGG	3 cut(s)	339, 1252, 1764
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	2 cut(s)	504, 1401
BstAFI	CTTAAG	1 cut(s)	734
BstAPI	GCANNNNNTGC	1 cut(s)	1331
BstBAI	YACGTR	2 cut(s)	141, 1075
BstC8I	GCNNGC	8 cut(s)	257, 551, 1327, 1413, 1434, 1638, 1706, 1927
BstDEI	CTNAG	2 cut(s)	21, 1500
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	6 cut(s)	310, 420, 616, 901, 1219, 1879
BstFNI	CGCG	1 cut(s)	549
BstHHI	GCGC	3 cut(s)	128, 549, 583
BstKTI	GATC	6 cut(s)	540, 895, 1003, 1060, 1117, 1450
BstMAI	GTCTC	5 cut(s)	363, 1303, 1487, 1752, 1799
BstMBI	GATC	6 cut(s)	537, 892, 1000, 1057, 1114, 1447
BstNI	CCWGG	3 cut(s)	339, 1252, 1764
BstNSI	RCATGY	2 cut(s)	1415, 1894
BstSCI	CCNGG	4 cut(s)	337, 1250, 1762, 1854
BstSFI	CTRYAG	4 cut(s)	749, 996, 1314, 1536
BstSLI	GKGCMC	1 cut(s)	1344
BstUI	CGCG	1 cut(s)	549
BstV2I	GAAGAC	2 cut(s)	160, 1934
BstX2I	RGATCY	2 cut(s)	1057, 1447
BstYI	RGATCY	2 cut(s)	1057, 1447
BsuRI	GGCC	3 cut(s)	911, 1329, 1929
BtgZI	GCGATG	3 cut(s)	1029, 1349, 1596
BtsCI	GGATG	6 cut(s)	310, 420, 616, 901, 1219, 1879
BtsI	GCAGTG	2 cut(s)	590, 1589
BtsIMutI	CAGTG	3 cut(s)	590, 1589, 1823
BveI	ACCTGC	2 cut(s)	261, 953
Cac8I	GCNNGC	8 cut(s)	257, 551, 1327, 1413, 1434, 1638, 1706, 1927
CaiI	CAGNNNCTG	1 cut(s)	968
CfoI	GCGC	3 cut(s)	128, 549, 583
Cfr10I	RCCGGY	1 cut(s)	1109
Csp6I	GTAC	3 cut(s)	1199, 1497, 1525
CspAI	ACCGGT	1 cut(s)	1109
CviAII	CATG	8 cut(s)	401, 431, 578, 1355, 1412, 1569, 1891, 1920
CviQI	GTAC	3 cut(s)	1199, 1497, 1525
DdeI	CTNAG	2 cut(s)	21, 1500
DpnI	GATC	6 cut(s)	539, 894, 1002, 1059, 1116, 1449
DpnII	GATC	6 cut(s)	537, 892, 1000, 1057, 1114, 1447
DraI	TTTAAA	2 cut(s)	1428, 1552
DriI	GACNNNNNGTC	1 cut(s)	744
Eam1104I	CTCTTC	2 cut(s)	504, 1401
Eam1105I	GACNNNNNGTC	1 cut(s)	744
EarI	CTCTTC	2 cut(s)	504, 1401
EciI	GGCGGA	3 cut(s)	79, 427, 512
Ecl136II	GAGCTC	3 cut(s)	48, 553, 1756
Eco130I	CCWWGG	2 cut(s)	820, 1687
Eco147I	AGGCCT	2 cut(s)	1329, 1929
Eco24I	GRGCYC	3 cut(s)	50, 555, 1758
Eco31I	GGTCTC	2 cut(s)	1487, 1799
Eco53kI	GAGCTC	3 cut(s)	48, 553, 1756
Eco57I	CTGAAG	1 cut(s)	1641
Eco72I	CACGTG	2 cut(s)	141, 1075
EcoICRI	GAGCTC	3 cut(s)	48, 553, 1756
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoRII	CCWGG	3 cut(s)	337, 1250, 1762
EcoT14I	CCWWGG	2 cut(s)	820, 1687
EcoT22I	ATGCAT	2 cut(s)	1099, 1570
EcoT38I	GRGCYC	3 cut(s)	50, 555, 1758
ErhI	CCWWGG	2 cut(s)	820, 1687
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	8 cut(s)	404, 434, 581, 1358, 1415, 1572, 1894, 1923
FatI	CATG	8 cut(s)	400, 430, 577, 1354, 1411, 1568, 1890, 1919
FauI	CCCGC	3 cut(s)	85, 1629, 1783
FauNDI	CATATG	1 cut(s)	496
FbaI	TGATCA	1 cut(s)	1114
FblI	GTMKAC	1 cut(s)	1178
FokI	GGATG	6 cut(s)	317, 427, 623, 888, 1226, 1886
FriOI	GRGCYC	3 cut(s)	50, 555, 1758
FspBI	CTAG	6 cut(s)	563, 596, 1236, 1580, 1751, 1938
FspI	TGCGCA	1 cut(s)	582
GlaI	GCGC	3 cut(s)	127, 548, 582
GsaI	CCCAGC	3 cut(s)	38, 263, 972
GsuI	CTGGAG	2 cut(s)	1178, 1742
HaeIII	GGCC	3 cut(s)	911, 1329, 1929
HapII	CCGG	2 cut(s)	1110, 1855
HhaI	GCGC	3 cut(s)	128, 549, 583
Hin1II	CATG	8 cut(s)	404, 434, 581, 1358, 1415, 1572, 1894, 1923
Hin6I	GCGC	3 cut(s)	126, 547, 581
HinP1I	GCGC	3 cut(s)	126, 547, 581
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	4 cut(s)	674, 1206, 1292, 1514
HpaII	CCGG	2 cut(s)	1110, 1855
HphI	GGTGA	2 cut(s)	995, 1124
Hpy166II	GTNNAC	7 cut(s)	220, 292, 1179, 1201, 1342, 1630, 1740
Hpy188I	TCNGA	8 cut(s)	7, 106, 202, 462, 688, 862, 1603, 1621
Hpy188III	TCNNGA	8 cut(s)	113, 362, 641, 875, 1229, 1451, 1751, 1949
Hpy8I	GTNNAC	7 cut(s)	220, 292, 1179, 1201, 1342, 1630, 1740
Hpy99I	CGWCG	2 cut(s)	206, 358
HpyAV	CCTTC	7 cut(s)	233, 486, 496, 845, 980, 1021, 1138
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	3 cut(s)	140, 1074, 1723
HpyF3I	CTNAG	2 cut(s)	21, 1500
HpySE526I	ACGT	3 cut(s)	140, 1074, 1723
Hsp92II	CATG	8 cut(s)	404, 434, 581, 1358, 1415, 1572, 1894, 1923
HspAI	GCGC	3 cut(s)	126, 547, 581
Ksp22I	TGATCA	1 cut(s)	1114
Kzo9I	GATC	6 cut(s)	537, 892, 1000, 1057, 1114, 1447
LguI	GCTCTTC	1 cut(s)	1401
LmnI	GCTCC	6 cut(s)	136, 311, 525, 558, 1761, 1777
MaeI	CTAG	6 cut(s)	563, 596, 1236, 1580, 1751, 1938
MaeII	ACGT	3 cut(s)	140, 1074, 1723
MaeIII	GTNAC	1 cut(s)	1238
MalI	GATC	6 cut(s)	539, 894, 1002, 1059, 1116, 1449
MboI	GATC	6 cut(s)	537, 892, 1000, 1057, 1114, 1447
MboII	GAAGA	8 cut(s)	160, 326, 377, 521, 1418, 1634, 1934, 1937
MfeI	CAATTG	2 cut(s)	759, 1165
MflI	RGATCY	2 cut(s)	1057, 1447
MhlI	GDGCHC	4 cut(s)	50, 555, 1344, 1758
MlyI	GAGTC	1 cut(s)	1508
MmeI	TCCRAC	4 cut(s)	129, 225, 1707, 1911
Mph1103I	ATGCAT	2 cut(s)	1099, 1570
MroXI	GAANNNNTTC	1 cut(s)	1224
MspA1I	CMGCKG	1 cut(s)	704
MspCI	CTTAAG	1 cut(s)	734
MspI	CCGG	2 cut(s)	1110, 1855
MspR9I	CCNGG	4 cut(s)	339, 1252, 1764, 1856
MunI	CAATTG	2 cut(s)	759, 1165
MvaI	CCWGG	3 cut(s)	339, 1252, 1764
MvnI	CGCG	1 cut(s)	549
NciI	CCSGG	1 cut(s)	1856
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	6 cut(s)	537, 892, 1000, 1057, 1114, 1447
NlaIII	CATG	8 cut(s)	404, 434, 581, 1358, 1415, 1572, 1894, 1923
NlaIV	GGNNCC	3 cut(s)	1059, 1449, 1472
NmeAIII	GCCGAG	2 cut(s)	699, 1834
NmuCI	GTSAC	1 cut(s)	1238
NsbI	TGCGCA	1 cut(s)	582
NsiI	ATGCAT	2 cut(s)	1099, 1570
NspI	RCATGY	2 cut(s)	1415, 1894
PacI	TTAATTAA	1 cut(s)	918
PaeI	GCATGC	1 cut(s)	1415
PaqCI	CACCTGC	1 cut(s)	953
PceI	AGGCCT	2 cut(s)	1329, 1929
PciSI	GCTCTTC	1 cut(s)	1401
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 546
PdmI	GAANNNNTTC	1 cut(s)	1224
PfeI	GAWTC	3 cut(s)	674, 1206, 1292
PinAI	ACCGGT	1 cut(s)	1109
PleI	GAGTC	1 cut(s)	1508
PmaCI	CACGTG	2 cut(s)	141, 1075
PmlI	CACGTG	2 cut(s)	141, 1075
PpsI	GAGTC	1 cut(s)	1508
Ppu21I	YACGTR	2 cut(s)	141, 1075
PshBI	ATTAAT	2 cut(s)	657, 918
PsiI	TTATAA	1 cut(s)	1280
Psp124BI	GAGCTC	3 cut(s)	50, 555, 1758
Psp6I	CCWGG	3 cut(s)	337, 1250, 1762
PspCI	CACGTG	2 cut(s)	141, 1075
PspFI	CCCAGC	3 cut(s)	34, 259, 968
PspGI	CCWGG	3 cut(s)	337, 1250, 1762
PspN4I	GGNNCC	3 cut(s)	1059, 1449, 1472
PsrI	GAACNNNNNNTAC	2 cut(s)	934, 966
PstI	CTGCAG	3 cut(s)	753, 1000, 1540
PstNI	CAGNNNCTG	1 cut(s)	968
PsuI	RGATCY	2 cut(s)	1057, 1447
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	3 cut(s)	1200, 1498, 1526
RsaNI	GTAC	3 cut(s)	1199, 1497, 1525
SacI	GAGCTC	3 cut(s)	50, 555, 1758
SapI	GCTCTTC	1 cut(s)	1401
Sau3AI	GATC	6 cut(s)	537, 892, 1000, 1057, 1114, 1447
SchI	GAGTC	1 cut(s)	1508
ScrFI	CCNGG	4 cut(s)	339, 1252, 1764, 1856
SduI	GDGCHC	4 cut(s)	50, 555, 1344, 1758
SfcI	CTRYAG	4 cut(s)	749, 996, 1314, 1536
SmlI	CTYRAG	2 cut(s)	639, 734
SmoI	CTYRAG	2 cut(s)	639, 734
SpeI	ACTAGT	1 cut(s)	562
SphI	GCATGC	1 cut(s)	1415
SseBI	AGGCCT	2 cut(s)	1329, 1929
SspMI	CTAG	6 cut(s)	563, 596, 1236, 1580, 1751, 1938
SstI	GAGCTC	3 cut(s)	50, 555, 1758
StuI	AGGCCT	2 cut(s)	1329, 1929
StyD4I	CCNGG	4 cut(s)	337, 1250, 1762, 1854
StyI	CCWWGG	2 cut(s)	820, 1687
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	3 cut(s)	143, 1077, 1726
TaqI	TCGA	5 cut(s)	231, 275, 540, 621, 1183
TatI	WGTACW	2 cut(s)	1198, 1496
TauI	GCSGC	6 cut(s)	41, 58, 61, 83, 911, 1151
TfiI	GAWTC	3 cut(s)	674, 1206, 1292
TscAI	CASTG	3 cut(s)	590, 1596, 1823
TseFI	GTSAC	1 cut(s)	1238
Tsp45I	GTSAC	1 cut(s)	1238
TspDTI	ATGAA	4 cut(s)	389, 563, 1278, 1908
TspRI	CASTG	3 cut(s)	590, 1596, 1823
Vha464I	CTTAAG	1 cut(s)	734
VneI	GTGCAC	1 cut(s)	1340
VspI	ATTAAT	2 cut(s)	657, 918
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	6 cut(s)	348, 570, 847, 1123, 1245, 1832
XbaI	TCTAGA	1 cut(s)	1750
XceI	RCATGY	2 cut(s)	1415, 1894
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1135
XmiI	GTMKAC	1 cut(s)	1178
XmnI	GAANNNNTTC	1 cut(s)	1224
XspI	CTAG	6 cut(s)	563, 596, 1236, 1580, 1751, 1938
Zsp2I	ATGCAT	2 cut(s)	1099, 1570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.