Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005455

Physical Location & Seq

Genomic Coordinates Reverse (-)

10256137 .. 10259888

Gene Structure 3752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17113

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1824 bp

ATGTCGGGACAGGAACCCCAACTAGCTAACCACCACGCCAAGGCCGCCGCCAATCTCAACGTCGACCCACCGGAGACCGACGCCGCCGTCCCTTCCACGTGTCATCCCCCGAGGGACTCCGACGCCGCCGATGGCGAAGCTAAAAGATTGACCAAATTGGGAAAAAGCCGGTCCAGAAATTTCAAGGTGGAGTCCCCCATGGATTATGGACCTGACCCAGACGGCTACTTGCCTTTGCCTGGTCAACCCGTCTCTTCTTCTTCTTCCTCCCGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTGGTTCATGTTGCGAGGAAGATGCCGAAAAATGCGCATGCCCATTTCATTCTGGGACTAATGTATCAGAGGCTGGGTCAGCCTTCAAAGGCTGTTTTGGCATATGAGAAGGCCGAAGAGATTTTGCGCCGGCCCGAGGTTGACATTGATAGGACAGAGTTGCTTTCACTGGTTCAAATTCATCATGCGCAGTGTATTATGCTAGAGAGTTCGGTGGATGGTAGTTCGGATGAAGAACTTGAACCTCAGGGGCTTGAGGAGATTCTCTCGAAACTAAAAGAATCGATGCAGTCAGATGTAAGACAGGCAGCGGTATGGAATACTCTCGGTTTGATACTGCTTAAAACTGGCCGTCTCCAGAGTGCCATTTTGGTATTGTCATCTTTGTTAGCATTTGCCCCTACCAACTATGATTGCCTTGCAAACCTTGGGATTGCTTACCTTCAAAGTGGAAATTTGGAACTGTCAGAAAAATGTTTCCAGGAATTGATCCTCAAAGATCAAAATCATCCCACCGCCATGATCAATTATGCTGCGCTTCTTTTATGTAGATATGGTTCAGTTGTTGCAGGTGCTGGGGCAAATGCTGGTGGAGGTGCTTCTGCAGATCACATTTCTGCTATCAATGTTGCAAAGGAGTGTCTGTTAGCATCCTTGAATGAAGATCCTAAAGCAGGACATATCTGGGCTAATCTTGCAAATGCCTATTATATGACCGGTGATCATAGAAGTTCCAGCAAGTGCTTGGAGAAGGCGGCCAAATTAGAGCTCAATTGTATGTCTACACGATATGCTGTTGCAATACACCGAACCAAGGATGCAGAACGGCATCAAGATCCCCACGAACTTTACTGGGCAGGAAATGAAATGGCTTCAGTTATAAGAGATGGAGACTCTGTTTCTGTTGAACTTCCCATAGCATGGGCAGGGCTTGCCATGGTTCACAAAGCCCAACATGAGATTTCTGCAGCATTGGCCACTGAACAGAATGCCCTGACAGAGGTGGAAGAACACGCTGATTACAGTTTAAAACAGGCAATAGCTGAGGATCCAGATGATGCTGTGCAATGGCACCAGCTTGGTCTTCATAGCCTTTGTGCGCGACAATTCAAAAAGTCTCAAAAGTACCTCAAAGCTGCAGTTGCCCGTTTTAAAGAATGCAGTTATGCATGGTCAAATCTAGGTATCTCACTGCAACTATCAGAGGAGCCTTCACAAGCGGAGGAAGTATACACGAGGGCCTTGTCATTGGCGACAACTGATCTTGCCCATGCTATATTCTCCAACCTCGGCAATCTGTACCGCCAGCAGAAGCATTATGAACGTGCCAAGGCAATGTTCACGAAATCTCTTGAACTCCAGCCTGGCTATGCTCCAGCATTTAATAATTTGGGTCTTGTATTTGTTGCTGAGGGTCAATGGGAAGAAGCTAAGTTCTGTTTCGACAAGGCGCTCCAGGCAGACCCAATGATGGATGCTGCCAAATCCAACTTGATTAAAGCTGTGTCTACATCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035327 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_19 TPR_2 TPR_7 TPR_8

Protein Analysis

607

Amino Acids

66.43

Weight (kDa)

5.84

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_19	PF14559	214 - 272	4e-07	Tetratricopeptide repeat
TPR_12	PF13424	491 - 555	2.5e-07	Tetratricopeptide repeat
TPR_12	PF13424	526 - 588	3e-07	Tetratricopeptide repeat
TPR_1	PF00515	527 - 558	1.8e-06	Tetratricopeptide repeat
TPR_1	PF00515	559 - 590	4.5e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63200 AT5G63200
fragaria_vesca	FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030
malus_domestica	MD06G1160400.v1.1
prunus_persica	Prupe.5G160000_v2.0.a1
pyrus_communis	pycom06g14350
rosa_chinensis	RchiOBHm_Chr5g0027621 RchiOBHm_Chr5g0027631 RchiOBHm_Chr7g0191501
rosa_laevigata	RLG00000004443
rosa_multiflora	Rmu_co8226669.1_g000001 Rmu_sc0002661.1_g000013 Rmu_sc0010599.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438440 Rroxscaffold_3G00263740
rosa_rugosa	Rorug05G0100300 Rorug06G0510500
rosa_samantha	Rh5CG212600 Rh5DG194500 Rh7AG118900 Rh7BG121000 Rh7CG123700 Rh7DG121800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1184
AarI	CACCTGC	1 cut(s)	863
AasI	GACNNNNNNGTC	1 cut(s)	86
Acc16I	TGCGCA	2 cut(s)	339, 492
Acc36I	ACCTGC	1 cut(s)	863
AccB1I	GGYRCC	1 cut(s)	1374
AccB7I	CCANNNNNTGG	1 cut(s)	1224
AccI	GTMKAC	4 cut(s)	63, 1085, 1533, 1811
AccII	CGCG	1 cut(s)	1405
AciI	CCGC	9 cut(s)	45, 48, 84, 126, 614, 819, 1058, 1523, 1606
AclWI	GGATC	5 cut(s)	787, 962, 1133, 1346, 1359
AcoI	YGGCCR	3 cut(s)	652, 1059, 1278
AcsI	RAATTY	3 cut(s)	178, 480, 757
AcuI	CTGAAG	1 cut(s)	1161
AcvI	CACGTG	1 cut(s)	99
AcyI	GRCGYC	2 cut(s)	81, 123
AfaI	GTAC	2 cut(s)	1430, 1604
AfiI	CCNNNNNNNGG	8 cut(s)	40, 239, 439, 977, 1117, 1224, 1303, 1774
AflIII	ACRYGT	1 cut(s)	98
AgeI	ACCGGT	1 cut(s)	1019
AgsI	TTSAA	9 cut(s)	184, 390, 479, 545, 749, 961, 1211, 1414, 1658
AjnI	CCWGG	4 cut(s)	238, 783, 1666, 1758
AjuI	GAANNNNNNNTTGG	2 cut(s)	1625, 1657
AluBI	AGCT	8 cut(s)	26, 140, 1072, 1346, 1381, 1439, 1733, 1805
AluI	AGCT	8 cut(s)	26, 140, 1072, 1346, 1381, 1439, 1733, 1805
Alw21I	GWGCWC	1 cut(s)	1074
Alw26I	GTCTC	5 cut(s)	68, 256, 662, 1188, 1425
AlwI	GGATC	5 cut(s)	787, 962, 1133, 1346, 1359
AlwNI	CAGNNNCTG	2 cut(s)	376, 878
Ama87I	CYCGRG	2 cut(s)	109, 437
AoxI	GGCC	7 cut(s)	42, 414, 434, 652, 1059, 1278, 1542
ApeKI	GCWGC	6 cut(s)	288, 611, 836, 1271, 1439, 1781
ApoI	RAATTY	3 cut(s)	178, 480, 757
AsiGI	ACCGGT	1 cut(s)	1019
AspLEI	GCGC	6 cut(s)	340, 432, 493, 841, 1405, 1756
AspS9I	GGNCC	4 cut(s)	171, 209, 435, 1542
AsuHPI	GGTGA	1 cut(s)	1034
AvaI	CYCGRG	2 cut(s)	109, 437
AvaII	GGWCC	2 cut(s)	171, 209
AxyI	CCTNAGG	1 cut(s)	549
BaeI	ACNNNNGTAYC	2 cut(s)	350, 383
BalI	TGGCCA	1 cut(s)	1280
BamHI	GGATCC	1 cut(s)	1351
BanI	GGYRCC	1 cut(s)	1374
BanII	GRGCYC	1 cut(s)	1074
BauI	CACGAG	1 cut(s)	1537
BbrPI	CACGTG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	1379
Bbv12I	GWGCWC	1 cut(s)	1074
BbvCI	CCTCAGC	2 cut(s)	1347, 1713
BbvI	GCAGC	6 cut(s)	300, 623, 823, 1283, 1426, 1768
BccI	CCATC	4 cut(s)	125, 515, 1184, 1768
BceAI	ACGGC	4 cut(s)	71, 238, 639, 1145
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BciT130I	CCWGG	4 cut(s)	240, 785, 1668, 1760
BclI	TGATCA	2 cut(s)	825, 1024
BcoDI	GTCTC	5 cut(s)	68, 256, 662, 1188, 1425
BfaI	CTAG	3 cut(s)	23, 506, 1484
BfmI	CTRYAG	3 cut(s)	906, 1269, 1440
BfoI	RGCGCY	1 cut(s)	1757
BfuAI	ACCTGC	1 cut(s)	863
Bme1390I	CCNGG	4 cut(s)	240, 785, 1668, 1760
Bme18I	GGWCC	2 cut(s)	171, 209
BmeT110I	CYCGRG	2 cut(s)	109, 437
BmgT120I	GGNCC	4 cut(s)	171, 209, 435, 1542
BmiI	GGNNCC	4 cut(s)	15, 1353, 1376, 1512
BmrFI	CCNGG	4 cut(s)	240, 785, 1668, 1760
BmrI	ACTGGG	1 cut(s)	1165
BmsI	GCATC	7 cut(s)	315, 579, 962, 1111, 1141, 1351, 1768
BmuI	ACTGGG	1 cut(s)	1165
BpiI	GAAGAC	1 cut(s)	1379
BplI	GAGNNNNNCTC	2 cut(s)	554, 586
BpmI	CTGGAG	4 cut(s)	644, 1646, 1662, 1742
Bpu10I	CCTNAGC	2 cut(s)	1347, 1713
BpuEI	CTTGAG	1 cut(s)	578
Bsa29I	ATCGAT	1 cut(s)	587
BsaAI	YACGTR	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	807
BsaHI	GRCGYC	2 cut(s)	81, 123
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	9 cut(s)	39, 110, 198, 438, 730, 1116, 1239, 1591, 1632
BsaWI	WCCGGW	2 cut(s)	70, 1019
BsaXI	ACNNNNNCTCC	4 cut(s)	932, 962, 1185, 1215
Bsc4I	CCNNNNNNNGG	8 cut(s)	40, 239, 439, 977, 1117, 1224, 1303, 1774
Bse118I	RCCGGY	3 cut(s)	168, 432, 1019
Bse1I	ACTGG	4 cut(s)	304, 477, 655, 1160
Bse21I	CCTNAGG	1 cut(s)	549
Bse3DI	GCAATG	2 cut(s)	1376, 1644
Bse8I	GATNNNNATC	1 cut(s)	807
BseBI	CCWGG	4 cut(s)	240, 785, 1668, 1760
BseCI	ATCGAT	1 cut(s)	587
BseDI	CCNNGG	9 cut(s)	39, 110, 198, 438, 730, 1116, 1239, 1591, 1632
BseGI	GGATG	7 cut(s)	103, 526, 538, 811, 953, 1126, 1783
BseJI	GATNNNNATC	1 cut(s)	807
BseLI	CCNNNNNNNGG	8 cut(s)	40, 239, 439, 977, 1117, 1224, 1303, 1774
BseMI	GCAATG	2 cut(s)	1376, 1644
BseMII	CTCAG	3 cut(s)	563, 1338, 1704
BseNI	ACTGG	4 cut(s)	304, 477, 655, 1160
BseRI	GAGGAG	2 cut(s)	575, 1523
BseXI	GCAGC	6 cut(s)	300, 623, 823, 1283, 1426, 1768
BseYI	CCCAGC	2 cut(s)	376, 878
Bsh1236I	CGCG	1 cut(s)	1405
BshFI	GGCC	7 cut(s)	44, 416, 436, 654, 1061, 1280, 1544
BshNI	GGYRCC	1 cut(s)	1374
BshTI	ACCGGT	1 cut(s)	1019
BshVI	ATCGAT	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	1074
BsiHKCI	CYCGRG	2 cut(s)	109, 437
BsiSI	CCGG	4 cut(s)	71, 169, 433, 1020
BslFI	GGGAC	5 cut(s)	21, 74, 128, 178, 372
BslI	CCNNNNNNNGG	8 cut(s)	40, 239, 439, 977, 1117, 1224, 1303, 1774
BsmAI	GTCTC	5 cut(s)	68, 256, 662, 1188, 1425
BsmBI	CGTCTC	2 cut(s)	256, 662
BsmFI	GGGAC	5 cut(s)	21, 74, 128, 178, 372
BsmI	GAATGC	2 cut(s)	1297, 1466
BsnI	GGCC	7 cut(s)	44, 416, 436, 654, 1061, 1280, 1544
Bso31I	GGTCTC	1 cut(s)	68
BsoBI	CYCGRG	2 cut(s)	109, 437
Bsp1286I	GDGCHC	1 cut(s)	1074
Bsp143I	GATC	9 cut(s)	792, 802, 825, 910, 967, 1024, 1138, 1351, 1564
Bsp19I	CCATGG	2 cut(s)	198, 1239
BspACI	CCGC	9 cut(s)	45, 48, 84, 126, 614, 819, 1058, 1523, 1606
BspANI	GGCC	7 cut(s)	44, 416, 436, 654, 1061, 1280, 1544
BspCNI	CTCAG	3 cut(s)	562, 1339, 1705
BspDI	ATCGAT	1 cut(s)	587
BspFNI	CGCG	1 cut(s)	1405
BspLI	GGNNCC	4 cut(s)	15, 1353, 1376, 1512
BspMAI	CTGCAG	3 cut(s)	910, 1273, 1444
BspMI	ACCTGC	1 cut(s)	863
BspPI	GGATC	5 cut(s)	787, 962, 1133, 1346, 1359
BspT107I	GGYRCC	1 cut(s)	1374
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	2 cut(s)	1376, 1644
BsrFI	RCCGGY	3 cut(s)	168, 432, 1019
BsrI	ACTGG	4 cut(s)	304, 477, 655, 1160
BssAI	RCCGGY	3 cut(s)	168, 432, 1019
BssECI	CCNNGG	9 cut(s)	39, 110, 198, 438, 730, 1116, 1239, 1591, 1632
BssMI	GATC	9 cut(s)	792, 802, 825, 910, 967, 1024, 1138, 1351, 1564
BssNAI	GTATAC	1 cut(s)	1534
BssNI	GRCGYC	2 cut(s)	81, 123
BssSI	CACGAG	1 cut(s)	1537
BssT1I	CCWWGG	6 cut(s)	39, 198, 730, 1116, 1239, 1632
Bst1107I	GTATAC	1 cut(s)	1534
Bst2BI	CACGAG	1 cut(s)	1537
Bst2UI	CCWGG	4 cut(s)	240, 785, 1668, 1760
Bst4CI	ACNGT	2 cut(s)	768, 1328
Bst6I	CTCTTC	2 cut(s)	259, 414
BstACI	GRCGYC	2 cut(s)	81, 123
BstAPI	GCANNNNNTGC	1 cut(s)	1235
BstBAI	YACGTR	1 cut(s)	99
BstC8I	GCNNGC	4 cut(s)	342, 434, 1236, 1610
BstDEI	CTNAG	4 cut(s)	549, 1347, 1713, 1734
BstDSI	CCRYGG	2 cut(s)	198, 1239
BstENI	CCTNNNNNAGG	2 cut(s)	975, 1301
BstF5I	GGATG	7 cut(s)	103, 526, 538, 811, 953, 1126, 1783
BstFNI	CGCG	1 cut(s)	1405
BstH2I	RGCGCY	1 cut(s)	1757
BstHHI	GCGC	6 cut(s)	340, 432, 493, 841, 1405, 1756
BstKTI	GATC	9 cut(s)	795, 805, 828, 913, 970, 1027, 1141, 1354, 1567
BstMAI	GTCTC	5 cut(s)	68, 256, 662, 1188, 1425
BstMBI	GATC	9 cut(s)	792, 802, 825, 910, 967, 1024, 1138, 1351, 1564
BstMWI	GCNNNNNNNGC	8 cut(s)	44, 382, 401, 998, 1235, 1277, 1445, 1760
BstNI	CCWGG	4 cut(s)	240, 785, 1668, 1760
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	4 cut(s)	238, 783, 1666, 1758
BstSFI	CTRYAG	3 cut(s)	906, 1269, 1440
BstUI	CGCG	1 cut(s)	1405
BstV1I	GCAGC	6 cut(s)	300, 623, 823, 1283, 1426, 1768
BstV2I	GAAGAC	1 cut(s)	1379
BstX2I	RGATCY	3 cut(s)	967, 1138, 1351
BstYI	RGATCY	3 cut(s)	967, 1138, 1351
BstZ17I	GTATAC	1 cut(s)	1534
Bsu15I	ATCGAT	1 cut(s)	587
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	7 cut(s)	44, 416, 436, 654, 1061, 1280, 1544
BsuTUI	ATCGAT	1 cut(s)	587
BtgI	CCRYGG	2 cut(s)	198, 1239
BtsCI	GGATG	7 cut(s)	103, 526, 538, 811, 953, 1126, 1783
BtsI	GCAGTG	2 cut(s)	500, 1493
BtsIMutI	CAGTG	4 cut(s)	470, 500, 1281, 1493
BveI	ACCTGC	1 cut(s)	863
Cac8I	GCNNGC	4 cut(s)	342, 434, 1236, 1610
CaiI	CAGNNNCTG	2 cut(s)	376, 878
CfoI	GCGC	6 cut(s)	340, 432, 493, 841, 1405, 1756
Cfr10I	RCCGGY	3 cut(s)	168, 432, 1019
Cfr13I	GGNCC	4 cut(s)	171, 209, 435, 1542
ClaI	ATCGAT	1 cut(s)	587
CseI	GACGC	2 cut(s)	89, 131
Csp6I	GTAC	2 cut(s)	1429, 1603
CspAI	ACCGGT	1 cut(s)	1019
CviQI	GTAC	2 cut(s)	1429, 1603
DdeI	CTNAG	4 cut(s)	549, 1347, 1713, 1734
DpnI	GATC	9 cut(s)	794, 804, 827, 912, 969, 1026, 1140, 1353, 1566
DpnII	GATC	9 cut(s)	792, 802, 825, 910, 967, 1024, 1138, 1351, 1564
DraI	TTTAAA	2 cut(s)	1332, 1456
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	3 cut(s)	652, 1059, 1278
Eam1104I	CTCTTC	2 cut(s)	259, 414
EarI	CTCTTC	2 cut(s)	259, 414
Ecl136II	GAGCTC	1 cut(s)	1072
Eco130I	CCWWGG	6 cut(s)	39, 198, 730, 1116, 1239, 1632
Eco24I	GRGCYC	1 cut(s)	1074
Eco31I	GGTCTC	1 cut(s)	68
Eco47I	GGWCC	2 cut(s)	171, 209
Eco53kI	GAGCTC	1 cut(s)	1072
Eco57I	CTGAAG	1 cut(s)	1161
Eco72I	CACGTG	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	549
Eco88I	CYCGRG	2 cut(s)	109, 437
EcoICRI	GAGCTC	1 cut(s)	1072
EcoNI	CCTNNNNNAGG	2 cut(s)	975, 1301
EcoO109I	RGGNCCY	1 cut(s)	1542
EcoRII	CCWGG	4 cut(s)	238, 783, 1666, 1758
EcoT14I	CCWWGG	6 cut(s)	39, 198, 730, 1116, 1239, 1632
EcoT22I	ATGCAT	1 cut(s)	1474
EcoT38I	GRGCYC	1 cut(s)	1074
ErhI	CCWWGG	6 cut(s)	39, 198, 730, 1116, 1239, 1632
Esp3I	CGTCTC	2 cut(s)	256, 662
FaqI	GGGAC	5 cut(s)	21, 74, 128, 178, 372
FauNDI	CATATG	1 cut(s)	406
FbaI	TGATCA	2 cut(s)	825, 1024
FblI	GTMKAC	4 cut(s)	63, 1085, 1533, 1811
FokI	GGATG	7 cut(s)	90, 533, 545, 798, 940, 1133, 1790
FriOI	GRGCYC	1 cut(s)	1074
FspAI	RTGCGCAY	1 cut(s)	339
FspBI	CTAG	3 cut(s)	23, 506, 1484
FspI	TGCGCA	2 cut(s)	339, 492
GlaI	GCGC	6 cut(s)	339, 431, 492, 840, 1404, 1755
GsaI	CCCAGC	2 cut(s)	380, 882
GsuI	CTGGAG	4 cut(s)	644, 1646, 1662, 1742
HaeII	RGCGCY	1 cut(s)	1757
HaeIII	GGCC	7 cut(s)	44, 416, 436, 654, 1061, 1280, 1544
HapII	CCGG	4 cut(s)	71, 169, 433, 1020
HgaI	GACGC	2 cut(s)	89, 131
HhaI	GCGC	6 cut(s)	340, 432, 493, 841, 1405, 1756
Hin1I	GRCGYC	2 cut(s)	81, 123
Hin6I	GCGC	6 cut(s)	338, 430, 491, 839, 1403, 1754
HinP1I	GCGC	6 cut(s)	338, 430, 491, 839, 1403, 1754
HincII	GTYRAC	3 cut(s)	64, 245, 445
HindII	GTYRAC	3 cut(s)	64, 245, 445
HinfI	GANTC	5 cut(s)	116, 191, 565, 584, 1196
HpaII	CCGG	4 cut(s)	71, 169, 433, 1020
HphI	GGTGA	1 cut(s)	1034
Hpy166II	GTNNAC	8 cut(s)	64, 245, 445, 1086, 1246, 1534, 1644, 1812
Hpy188I	TCNGA	6 cut(s)	121, 372, 532, 598, 772, 1507
Hpy188III	TCNNGA	9 cut(s)	6, 174, 571, 661, 1136, 1355, 1645, 1655, 1818
Hpy8I	GTNNAC	8 cut(s)	64, 245, 445, 1086, 1246, 1534, 1644, 1812
Hpy99I	CGWCG	3 cut(s)	65, 83, 125
HpyAV	CCTTC	6 cut(s)	102, 396, 406, 755, 1048, 1524
HpyCH4III	ACNGT	2 cut(s)	768, 1328
HpyCH4IV	ACGT	3 cut(s)	60, 98, 1627
HpyF10VI	GCNNNNNNNGC	8 cut(s)	44, 382, 401, 998, 1235, 1277, 1445, 1760
HpyF3I	CTNAG	4 cut(s)	549, 1347, 1713, 1734
HpySE526I	ACGT	3 cut(s)	60, 98, 1627
Hsp92I	GRCGYC	2 cut(s)	81, 123
HspAI	GCGC	6 cut(s)	338, 430, 491, 839, 1403, 1754
KroI	GCCGGC	1 cut(s)	432
KroNI	GCCGGC	1 cut(s)	434
Ksp22I	TGATCA	2 cut(s)	825, 1024
Kzo9I	GATC	9 cut(s)	792, 802, 825, 910, 967, 1024, 1138, 1351, 1564
LmnI	GCTCC	3 cut(s)	1510, 1681, 1761
Lsp1109I	GCAGC	6 cut(s)	300, 623, 823, 1283, 1426, 1768
LweI	GCATC	7 cut(s)	315, 579, 962, 1111, 1141, 1351, 1768
MaeI	CTAG	3 cut(s)	23, 506, 1484
MaeII	ACGT	3 cut(s)	60, 98, 1627
MalI	GATC	9 cut(s)	794, 804, 827, 912, 969, 1026, 1140, 1353, 1566
MboI	GATC	9 cut(s)	792, 802, 825, 910, 967, 1024, 1138, 1351, 1564
MfeI	CAATTG	1 cut(s)	1075
MflI	RGATCY	3 cut(s)	967, 1138, 1351
MhlI	GDGCHC	1 cut(s)	1074
MlsI	TGGCCA	1 cut(s)	1280
MluNI	TGGCCA	1 cut(s)	1280
MlyI	GAGTC	3 cut(s)	110, 200, 1190
MmeI	TCCRAC	3 cut(s)	144, 1611, 1815
Mox20I	TGGCCA	1 cut(s)	1280
Mph1103I	ATGCAT	1 cut(s)	1474
MroNI	GCCGGC	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	1280
MseI	TTAA	5 cut(s)	645, 1331, 1455, 1686, 1800
MslI	CAYNNNNRTG	1 cut(s)	821
Msp20I	TGGCCA	1 cut(s)	1280
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	4 cut(s)	71, 169, 433, 1020
MspR9I	CCNGG	4 cut(s)	240, 785, 1668, 1760
MunI	CAATTG	1 cut(s)	1075
Mva1269I	GAATGC	2 cut(s)	1297, 1466
MvaI	CCWGG	4 cut(s)	240, 785, 1668, 1760
MvnI	CGCG	1 cut(s)	1405
MwoI	GCNNNNNNNGC	8 cut(s)	44, 382, 401, 998, 1235, 1277, 1445, 1760
NaeI	GCCGGC	1 cut(s)	434
NcoI	CCATGG	2 cut(s)	198, 1239
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	9 cut(s)	792, 802, 825, 910, 967, 1024, 1138, 1351, 1564
NgoMIV	GCCGGC	1 cut(s)	432
NlaIV	GGNNCC	4 cut(s)	15, 1353, 1376, 1512
NmeAIII	GCCGAG	1 cut(s)	1572
NsbI	TGCGCA	2 cut(s)	339, 492
NsiI	ATGCAT	1 cut(s)	1474
NspI	RCATGY	1 cut(s)	344
PaeI	GCATGC	1 cut(s)	344
PaqCI	CACCTGC	1 cut(s)	863
PctI	GAATGC	2 cut(s)	1297, 1466
PdiI	GCCGGC	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	565, 584
PflMI	CCANNNNNTGG	1 cut(s)	1224
PfoI	TCCNGGA	1 cut(s)	783
PinAI	ACCGGT	1 cut(s)	1019
PleI	GAGTC	3 cut(s)	110, 199, 1190
PmaCI	CACGTG	1 cut(s)	99
PmlI	CACGTG	1 cut(s)	99
PpsI	GAGTC	3 cut(s)	110, 199, 1190
Ppu21I	YACGTR	1 cut(s)	99
PsiI	TTATAA	1 cut(s)	1184
Psp124BI	GAGCTC	1 cut(s)	1074
Psp6I	CCWGG	4 cut(s)	238, 783, 1666, 1758
PspCI	CACGTG	1 cut(s)	99
PspFI	CCCAGC	2 cut(s)	376, 878
PspGI	CCWGG	4 cut(s)	238, 783, 1666, 1758
PspN4I	GGNNCC	4 cut(s)	15, 1353, 1376, 1512
PspPI	GGNCC	4 cut(s)	171, 209, 435, 1542
PsrI	GAACNNNNNNTAC	2 cut(s)	844, 876
PstI	CTGCAG	3 cut(s)	910, 1273, 1444
PstNI	CAGNNNCTG	2 cut(s)	376, 878
PsuI	RGATCY	3 cut(s)	967, 1138, 1351
RsaI	GTAC	2 cut(s)	1430, 1604
RsaNI	GTAC	2 cut(s)	1429, 1603
RseI	CAYNNNNRTG	1 cut(s)	821
SacI	GAGCTC	1 cut(s)	1074
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	5 cut(s)	645, 1331, 1455, 1686, 1800
Sau3AI	GATC	9 cut(s)	792, 802, 825, 910, 967, 1024, 1138, 1351, 1564
Sau96I	GGNCC	4 cut(s)	171, 209, 435, 1542
SchI	GAGTC	3 cut(s)	110, 200, 1190
ScrFI	CCNGG	4 cut(s)	240, 785, 1668, 1760
SduI	GDGCHC	1 cut(s)	1074
SfaNI	GCATC	7 cut(s)	315, 579, 962, 1111, 1141, 1351, 1768
SfcI	CTRYAG	3 cut(s)	906, 1269, 1440
SinI	GGWCC	2 cut(s)	171, 209
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
SphI	GCATGC	1 cut(s)	344
SsiI	CCGC	9 cut(s)	45, 48, 84, 126, 614, 819, 1058, 1523, 1606
SspMI	CTAG	3 cut(s)	23, 506, 1484
SstI	GAGCTC	1 cut(s)	1074
StyD4I	CCNGG	4 cut(s)	238, 783, 1666, 1758
StyI	CCWWGG	6 cut(s)	39, 198, 730, 1116, 1239, 1632
TaaI	ACNGT	2 cut(s)	768, 1328
TaiI	ACGT	3 cut(s)	63, 101, 1630
TaqI	TCGA	4 cut(s)	63, 572, 587, 1746
TaqII	GACCGA	1 cut(s)	92
TauI	GCSGC	5 cut(s)	47, 50, 86, 128, 1061
TfiI	GAWTC	2 cut(s)	565, 584
Tru1I	TTAA	5 cut(s)	645, 1331, 1455, 1686, 1800
Tru9I	TTAA	5 cut(s)	645, 1331, 1455, 1686, 1800
TscAI	CASTG	4 cut(s)	477, 500, 1288, 1500
TseI	GCWGC	6 cut(s)	288, 611, 836, 1271, 1439, 1781
TspDTI	ATGAA	8 cut(s)	299, 340, 473, 549, 978, 1182, 1379, 1638
TspRI	CASTG	4 cut(s)	477, 500, 1288, 1500
Van91I	CCANNNNNTGG	1 cut(s)	1224
VpaK11BI	GGWCC	2 cut(s)	171, 209
XagI	CCTNNNNNAGG	2 cut(s)	975, 1301
XapI	RAATTY	3 cut(s)	178, 480, 757
XceI	RCATGY	1 cut(s)	344
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1045
XmiI	GTMKAC	4 cut(s)	63, 1085, 1533, 1811
XspI	CTAG	3 cut(s)	23, 506, 1484
Zsp2I	ATGCAT	1 cut(s)	1474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.