Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005455

Physical Location & Seq

Genomic Coordinates Reverse (-)

9592369 .. 9596162

Gene Structure 3794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG123700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

ATGTCGGGACAGGAACCCCAACTAGCTAACCACCACCCCAAGGCCGCCGCCAATCTCAACGTCGACCCACCGGAAACCGACGCCGCCGTCCCGTCCACGTGTCATCCCCCGAGGGACTCCGACGCCGCCGATGGCGAAGCTAAAAGATTGACCAAATTGGGAAAAAGCCGGTCCAGAAATTTCAAGGTGGAGTCCCCCATGGATTATGGACCTGACCCAGATGGCTACTTGCCTGGTCAACCCGTCTCTTCTTCTTCTTCCTCCCGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTGGTTCATGTTGCGAGGAAGATGCCGAAAAATGCGCATGCCCATTTCATTCTGGGACTAATGTATCAGAGGCTGGGTCAGCCTTCAAAGGCTGTTTTGGCATATGAGAAGGCCGAAGAGATTTTGCGCCGGCCCGAGGTTGACATTGATAGGACAGAGTTGCTTTCACTGGTTCAAATTCATCACGCGCAGTGTATTATGCTAGAGAGTTCGGTGGATGGTAGTTCGGATGAAGAACTTGAACCTCAGGAGCTTGAGGAGATTCTCTCGAAACTAAAAGAATCGATGCAGTCAGATGTAAGACAGGCAGCAGTATGGAATACTCTCGGTTTGATACTGCTTAAAACTGGCCGTCTGCAGAGTGCCATTTTGGTATTGTCATCTTTGTTAGCATTTGCCCCTACCAACTATGATTGCCTTGCAAACCTTGGGATTGCTTGCCTTCAAAGTGGAAATTTGGAACTGTCAGAAAAATGTTTCCAGGAATTGACCCTCAAAGATCAAAATCATCCCACCGCCTTGATCAATTATGCTGCCCTTCTTTTATGTAGATATGGTTCAGTTGTTGCAGGTGCTGGGGCAAATGCTGGTGGAGGTGCTTCTGCAGATCACATTTCTGCTATCAATGTTGCAAAGGAGTGTTTGTTAGCATCCTTGAATGAAGATCCTAAAGCAGGACATATCTGGGCTAATCTTGCAAATGCCTATTATATGACTGGTGATCATAGAAGTTCCAGCAAGTGCTTGGAGAAGGCGGCCAAATTAGAGCTCAATTGTATGTCTACACGATATGCTGTTGCAATACACCGAACCAAGGATGCAGAACGGCATCAAGATCCCCACGAACTTTACTGGGCAGGAAATGAAATGGCTTCAGTTATAAGAGATGGAGACTCTGTTTCTGTTGAACTTCCCATAGCATGGGCAGGGCTTGCCATGGTTCACAAAGCCCAACATGAGATTTCAGCAGCATTGGCCACTGAACAGAATGCCCTGACAGAGGTGGAAGAACACGCTGATTACAGTTTAAAACAGGCAATAGCTGAGGATCCAGATGATGCTGTGCAATGGCACCAGCTTGGTCTTCATAGCCTTTGTGCGCGACAATTCAAAAAATCTCAAAAGTACCTCAAAGCTGCAGTTGCCCGTTTTAAAGAATGCAGTTATGCATGGTCAAATCTAGGTATCTCACTGCAACTATCAGAGGAGCCTTCACAAGCGGAGGAAGTATACACGAGGGCCTTGTCATTGGCGACAACTGATCTTGCCCATGCTATATTCTCCAACCTCGGCAATCTGTACCGCCAGCAGAAGCATTATGAACGTGCCAAGGCAATGTTCACGAAATCTCTTGAACTCCAGCCTGGCTATGCTCCGGCATTGAATAATTTGGGTCTTGTATTTGTTGCTGAGGGTCAATGGGAAGAAGCAAAGTTCTGTTTCGACAAGGCGCTCCAGGCAGACCCAATGATGGATGCTGCCAAATCCAACTTGATTAAAGCTGTGTCTACATCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035327 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_19 TPR_2 TPR_7 TPR_8

Protein Analysis

605

Amino Acids

66.19

Weight (kDa)

5.78

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_19	PF14559	212 - 270	1.1e-06	Tetratricopeptide repeat
TPR_12	PF13424	489 - 553	2.5e-07	Tetratricopeptide repeat
TPR_12	PF13424	524 - 586	6.4e-08	Tetratricopeptide repeat
TPR_1	PF00515	525 - 556	1.8e-06	Tetratricopeptide repeat
TPR_9	PF13371	529 - 600	9.6e-06	Tetratricopeptide repeat
TPR_19	PF14559	534 - 589	2.2e-06	Tetratricopeptide repeat
TPR_2	PF07719	557 - 588	6e-06	Tetratricopeptide repeat
TPR_1	PF00515	557 - 588	2.5e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63200 AT5G63200
fragaria_vesca	FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030
malus_domestica	MD06G1160400.v1.1
prunus_persica	Prupe.5G160000_v2.0.a1
pyrus_communis	pycom06g14350
rosa_chinensis	RchiOBHm_Chr5g0027621 RchiOBHm_Chr5g0027631 RchiOBHm_Chr7g0191501
rosa_laevigata	RLG00000004443
rosa_multiflora	Rmu_co8226669.1_g000001 Rmu_sc0002661.1_g000013 Rmu_sc0010599.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438440 Rroxscaffold_3G00263740
rosa_rugosa	Rorug05G0100300 Rorug06G0510500
rosa_samantha	Rh5CG212600 Rh5DG194500 Rh7AG118900 Rh7BG121000 Rh7CG123700 Rh7DG121800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1178
AarI	CACCTGC	1 cut(s)	857
AasI	GACNNNNNNGTC	1 cut(s)	86
Acc16I	TGCGCA	1 cut(s)	333
Acc36I	ACCTGC	1 cut(s)	857
AccB1I	GGYRCC	1 cut(s)	1368
AccB7I	CCANNNNNTGG	1 cut(s)	1218
AccI	GTMKAC	4 cut(s)	63, 1079, 1527, 1805
AccII	CGCG	2 cut(s)	485, 1399
AciI	CCGC	8 cut(s)	45, 48, 84, 126, 813, 1052, 1517, 1600
AclWI	GGATC	4 cut(s)	956, 1127, 1340, 1353
AcoI	YGGCCR	3 cut(s)	646, 1053, 1272
AcsI	RAATTY	3 cut(s)	178, 474, 751
AcuI	CTGAAG	1 cut(s)	1155
AcvI	CACGTG	1 cut(s)	99
AcyI	GRCGYC	2 cut(s)	81, 123
AfaI	GTAC	2 cut(s)	1424, 1598
AfiI	CCNNNNNNNGG	7 cut(s)	40, 433, 971, 1111, 1218, 1297, 1768
AflIII	ACRYGT	1 cut(s)	98
AjnI	CCWGG	4 cut(s)	232, 777, 1660, 1752
AjuI	GAANNNNNNNTTGG	2 cut(s)	1619, 1651
AluBI	AGCT	8 cut(s)	26, 140, 550, 1066, 1340, 1375, 1433, 1799
AluI	AGCT	8 cut(s)	26, 140, 550, 1066, 1340, 1375, 1433, 1799
Alw21I	GWGCWC	1 cut(s)	1068
Alw26I	GTCTC	2 cut(s)	250, 1182
AlwI	GGATC	4 cut(s)	956, 1127, 1340, 1353
AlwNI	CAGNNNCTG	2 cut(s)	370, 872
Ama87I	CYCGRG	2 cut(s)	109, 431
AoxI	GGCC	7 cut(s)	42, 408, 428, 646, 1053, 1272, 1536
ApeKI	GCWGC	6 cut(s)	282, 605, 830, 1265, 1433, 1775
ApoI	RAATTY	3 cut(s)	178, 474, 751
AspLEI	GCGC	5 cut(s)	334, 426, 487, 1399, 1750
AspS9I	GGNCC	4 cut(s)	171, 209, 429, 1536
AsuHPI	GGTGA	1 cut(s)	1028
AvaI	CYCGRG	2 cut(s)	109, 431
AvaII	GGWCC	2 cut(s)	171, 209
AxyI	CCTNAGG	1 cut(s)	543
BaeI	ACNNNNGTAYC	2 cut(s)	344, 377
BalI	TGGCCA	1 cut(s)	1274
BamHI	GGATCC	1 cut(s)	1345
BanI	GGYRCC	1 cut(s)	1368
BanII	GRGCYC	1 cut(s)	1068
BauI	CACGAG	1 cut(s)	1531
BbrPI	CACGTG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	1373
Bbv12I	GWGCWC	1 cut(s)	1068
BbvCI	CCTCAGC	2 cut(s)	1341, 1707
BbvI	GCAGC	6 cut(s)	294, 617, 817, 1277, 1420, 1762
BccI	CCATC	5 cut(s)	125, 215, 509, 1178, 1762
BceAI	ACGGC	3 cut(s)	71, 633, 1139
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BciT130I	CCWGG	4 cut(s)	234, 779, 1662, 1754
BclI	TGATCA	2 cut(s)	819, 1018
BcoDI	GTCTC	2 cut(s)	250, 1182
BfaI	CTAG	3 cut(s)	23, 500, 1478
BfmI	CTRYAG	3 cut(s)	653, 900, 1434
BfoI	RGCGCY	1 cut(s)	1751
BfuAI	ACCTGC	1 cut(s)	857
Bme1390I	CCNGG	4 cut(s)	234, 779, 1662, 1754
Bme18I	GGWCC	2 cut(s)	171, 209
BmeT110I	CYCGRG	2 cut(s)	109, 431
BmgT120I	GGNCC	4 cut(s)	171, 209, 429, 1536
BmiI	GGNNCC	4 cut(s)	15, 1347, 1370, 1506
BmrFI	CCNGG	4 cut(s)	234, 779, 1662, 1754
BmrI	ACTGGG	1 cut(s)	1159
BmsI	GCATC	7 cut(s)	309, 573, 956, 1105, 1135, 1345, 1762
BmuI	ACTGGG	1 cut(s)	1159
BpiI	GAAGAC	1 cut(s)	1373
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpmI	CTGGAG	2 cut(s)	1640, 1736
Bpu10I	CCTNAGC	2 cut(s)	1341, 1707
BpuEI	CTTGAG	1 cut(s)	572
Bsa29I	ATCGAT	1 cut(s)	581
BsaAI	YACGTR	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	801
BsaHI	GRCGYC	2 cut(s)	81, 123
BsaJI	CCNNGG	9 cut(s)	39, 110, 198, 432, 724, 1110, 1233, 1585, 1626
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	4 cut(s)	926, 956, 1179, 1209
Bsc4I	CCNNNNNNNGG	7 cut(s)	40, 433, 971, 1111, 1218, 1297, 1768
Bse118I	RCCGGY	2 cut(s)	168, 426
Bse1I	ACTGG	5 cut(s)	298, 471, 649, 1018, 1154
Bse21I	CCTNAGG	1 cut(s)	543
Bse3DI	GCAATG	2 cut(s)	1370, 1638
Bse8I	GATNNNNATC	1 cut(s)	801
BseBI	CCWGG	4 cut(s)	234, 779, 1662, 1754
BseCI	ATCGAT	1 cut(s)	581
BseDI	CCNNGG	9 cut(s)	39, 110, 198, 432, 724, 1110, 1233, 1585, 1626
BseGI	GGATG	7 cut(s)	103, 520, 532, 805, 947, 1120, 1777
BseJI	GATNNNNATC	1 cut(s)	801
BseLI	CCNNNNNNNGG	7 cut(s)	40, 433, 971, 1111, 1218, 1297, 1768
BseMI	GCAATG	2 cut(s)	1370, 1638
BseMII	CTCAG	3 cut(s)	557, 1332, 1698
BseNI	ACTGG	5 cut(s)	298, 471, 649, 1018, 1154
BseRI	GAGGAG	2 cut(s)	569, 1517
BseXI	GCAGC	6 cut(s)	294, 617, 817, 1277, 1420, 1762
BseYI	CCCAGC	2 cut(s)	370, 872
Bsh1236I	CGCG	2 cut(s)	485, 1399
BshFI	GGCC	7 cut(s)	44, 410, 430, 648, 1055, 1274, 1538
BshNI	GGYRCC	1 cut(s)	1368
BshVI	ATCGAT	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	1068
BsiHKCI	CYCGRG	2 cut(s)	109, 431
BsiSI	CCGG	4 cut(s)	71, 169, 427, 1673
BslFI	GGGAC	5 cut(s)	21, 74, 128, 178, 366
BslI	CCNNNNNNNGG	7 cut(s)	40, 433, 971, 1111, 1218, 1297, 1768
BsmAI	GTCTC	2 cut(s)	250, 1182
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	5 cut(s)	21, 74, 128, 178, 366
BsmI	GAATGC	2 cut(s)	1291, 1460
BsnI	GGCC	7 cut(s)	44, 410, 430, 648, 1055, 1274, 1538
BsoBI	CYCGRG	2 cut(s)	109, 431
Bsp1286I	GDGCHC	1 cut(s)	1068
Bsp143I	GATC	8 cut(s)	796, 819, 904, 961, 1018, 1132, 1345, 1558
Bsp19I	CCATGG	2 cut(s)	198, 1233
BspACI	CCGC	8 cut(s)	45, 48, 84, 126, 813, 1052, 1517, 1600
BspANI	GGCC	7 cut(s)	44, 410, 430, 648, 1055, 1274, 1538
BspCNI	CTCAG	3 cut(s)	556, 1333, 1699
BspDI	ATCGAT	1 cut(s)	581
BspFNI	CGCG	2 cut(s)	485, 1399
BspLI	GGNNCC	4 cut(s)	15, 1347, 1370, 1506
BspMAI	CTGCAG	3 cut(s)	657, 904, 1438
BspMI	ACCTGC	1 cut(s)	857
BspPI	GGATC	4 cut(s)	956, 1127, 1340, 1353
BspT107I	GGYRCC	1 cut(s)	1368
BsrDI	GCAATG	2 cut(s)	1370, 1638
BsrFI	RCCGGY	2 cut(s)	168, 426
BsrI	ACTGG	5 cut(s)	298, 471, 649, 1018, 1154
BssAI	RCCGGY	2 cut(s)	168, 426
BssECI	CCNNGG	9 cut(s)	39, 110, 198, 432, 724, 1110, 1233, 1585, 1626
BssMI	GATC	8 cut(s)	796, 819, 904, 961, 1018, 1132, 1345, 1558
BssNAI	GTATAC	1 cut(s)	1528
BssNI	GRCGYC	2 cut(s)	81, 123
BssSI	CACGAG	1 cut(s)	1531
BssT1I	CCWWGG	6 cut(s)	39, 198, 724, 1110, 1233, 1626
Bst1107I	GTATAC	1 cut(s)	1528
Bst2BI	CACGAG	1 cut(s)	1531
Bst2UI	CCWGG	4 cut(s)	234, 779, 1662, 1754
Bst4CI	ACNGT	2 cut(s)	762, 1322
Bst6I	CTCTTC	2 cut(s)	253, 408
BstACI	GRCGYC	2 cut(s)	81, 123
BstAPI	GCANNNNNTGC	1 cut(s)	1229
BstBAI	YACGTR	1 cut(s)	99
BstC8I	GCNNGC	5 cut(s)	336, 428, 736, 1230, 1604
BstDEI	CTNAG	3 cut(s)	543, 1341, 1707
BstDSI	CCRYGG	2 cut(s)	198, 1233
BstENI	CCTNNNNNAGG	2 cut(s)	969, 1295
BstF5I	GGATG	7 cut(s)	103, 520, 532, 805, 947, 1120, 1777
BstFNI	CGCG	2 cut(s)	485, 1399
BstH2I	RGCGCY	1 cut(s)	1751
BstHHI	GCGC	5 cut(s)	334, 426, 487, 1399, 1750
BstKTI	GATC	8 cut(s)	799, 822, 907, 964, 1021, 1135, 1348, 1561
BstMAI	GTCTC	2 cut(s)	250, 1182
BstMBI	GATC	8 cut(s)	796, 819, 904, 961, 1018, 1132, 1345, 1558
BstMWI	GCNNNNNNNGC	7 cut(s)	376, 395, 992, 1229, 1271, 1439, 1754
BstNI	CCWGG	4 cut(s)	234, 779, 1662, 1754
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	4 cut(s)	232, 777, 1660, 1752
BstSFI	CTRYAG	3 cut(s)	653, 900, 1434
BstUI	CGCG	2 cut(s)	485, 1399
BstV1I	GCAGC	6 cut(s)	294, 617, 817, 1277, 1420, 1762
BstV2I	GAAGAC	1 cut(s)	1373
BstX2I	RGATCY	3 cut(s)	961, 1132, 1345
BstYI	RGATCY	3 cut(s)	961, 1132, 1345
BstZ17I	GTATAC	1 cut(s)	1528
Bsu15I	ATCGAT	1 cut(s)	581
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	7 cut(s)	44, 410, 430, 648, 1055, 1274, 1538
BsuTUI	ATCGAT	1 cut(s)	581
BtgI	CCRYGG	2 cut(s)	198, 1233
BtsCI	GGATG	7 cut(s)	103, 520, 532, 805, 947, 1120, 1777
BtsI	GCAGTG	2 cut(s)	494, 1487
BtsIMutI	CAGTG	4 cut(s)	464, 494, 1275, 1487
BveI	ACCTGC	1 cut(s)	857
Cac8I	GCNNGC	5 cut(s)	336, 428, 736, 1230, 1604
CaiI	CAGNNNCTG	2 cut(s)	370, 872
CfoI	GCGC	5 cut(s)	334, 426, 487, 1399, 1750
Cfr10I	RCCGGY	2 cut(s)	168, 426
Cfr13I	GGNCC	4 cut(s)	171, 209, 429, 1536
ClaI	ATCGAT	1 cut(s)	581
CseI	GACGC	2 cut(s)	89, 131
Csp6I	GTAC	2 cut(s)	1423, 1597
CviAII	CATG	8 cut(s)	199, 305, 335, 1218, 1234, 1253, 1467, 1568
CviQI	GTAC	2 cut(s)	1423, 1597
DdeI	CTNAG	3 cut(s)	543, 1341, 1707
DpnI	GATC	8 cut(s)	798, 821, 906, 963, 1020, 1134, 1347, 1560
DpnII	GATC	8 cut(s)	796, 819, 904, 961, 1018, 1132, 1345, 1558
DraI	TTTAAA	2 cut(s)	1326, 1450
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	3 cut(s)	646, 1053, 1272
Eam1104I	CTCTTC	2 cut(s)	253, 408
EarI	CTCTTC	2 cut(s)	253, 408
Ecl136II	GAGCTC	1 cut(s)	1066
Eco130I	CCWWGG	6 cut(s)	39, 198, 724, 1110, 1233, 1626
Eco24I	GRGCYC	1 cut(s)	1068
Eco47I	GGWCC	2 cut(s)	171, 209
Eco53kI	GAGCTC	1 cut(s)	1066
Eco57I	CTGAAG	1 cut(s)	1155
Eco72I	CACGTG	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	543
Eco88I	CYCGRG	2 cut(s)	109, 431
EcoICRI	GAGCTC	1 cut(s)	1066
EcoNI	CCTNNNNNAGG	2 cut(s)	969, 1295
EcoO109I	RGGNCCY	1 cut(s)	1536
EcoRII	CCWGG	4 cut(s)	232, 777, 1660, 1752
EcoT14I	CCWWGG	6 cut(s)	39, 198, 724, 1110, 1233, 1626
EcoT22I	ATGCAT	1 cut(s)	1468
EcoT38I	GRGCYC	1 cut(s)	1068
ErhI	CCWWGG	6 cut(s)	39, 198, 724, 1110, 1233, 1626
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	8 cut(s)	202, 308, 338, 1221, 1237, 1256, 1470, 1571
FaqI	GGGAC	5 cut(s)	21, 74, 128, 178, 366
FatI	CATG	8 cut(s)	198, 304, 334, 1217, 1233, 1252, 1466, 1567
FauNDI	CATATG	1 cut(s)	400
FbaI	TGATCA	2 cut(s)	819, 1018
FblI	GTMKAC	4 cut(s)	63, 1079, 1527, 1805
FokI	GGATG	7 cut(s)	90, 527, 539, 792, 934, 1127, 1784
FriOI	GRGCYC	1 cut(s)	1068
FspAI	RTGCGCAY	1 cut(s)	333
FspBI	CTAG	3 cut(s)	23, 500, 1478
FspI	TGCGCA	1 cut(s)	333
GlaI	GCGC	5 cut(s)	333, 425, 486, 1398, 1749
GsaI	CCCAGC	2 cut(s)	374, 876
GsuI	CTGGAG	2 cut(s)	1640, 1736
HaeII	RGCGCY	1 cut(s)	1751
HaeIII	GGCC	7 cut(s)	44, 410, 430, 648, 1055, 1274, 1538
HapII	CCGG	4 cut(s)	71, 169, 427, 1673
HgaI	GACGC	2 cut(s)	89, 131
HhaI	GCGC	5 cut(s)	334, 426, 487, 1399, 1750
Hin1I	GRCGYC	2 cut(s)	81, 123
Hin1II	CATG	8 cut(s)	202, 308, 338, 1221, 1237, 1256, 1470, 1571
Hin6I	GCGC	5 cut(s)	332, 424, 485, 1397, 1748
HinP1I	GCGC	5 cut(s)	332, 424, 485, 1397, 1748
HincII	GTYRAC	3 cut(s)	64, 239, 439
HindII	GTYRAC	3 cut(s)	64, 239, 439
HinfI	GANTC	5 cut(s)	116, 191, 559, 578, 1190
HpaII	CCGG	4 cut(s)	71, 169, 427, 1673
HphI	GGTGA	1 cut(s)	1028
Hpy166II	GTNNAC	9 cut(s)	64, 96, 239, 439, 1080, 1240, 1528, 1638, 1806
Hpy188I	TCNGA	6 cut(s)	121, 366, 526, 592, 766, 1501
Hpy188III	TCNNGA	9 cut(s)	6, 174, 545, 565, 1130, 1349, 1639, 1649, 1812
Hpy8I	GTNNAC	9 cut(s)	64, 96, 239, 439, 1080, 1240, 1528, 1638, 1806
Hpy99I	CGWCG	3 cut(s)	65, 83, 125
HpyAV	CCTTC	6 cut(s)	390, 400, 749, 845, 1042, 1518
HpyCH4III	ACNGT	2 cut(s)	762, 1322
HpyCH4IV	ACGT	3 cut(s)	60, 98, 1621
HpyF10VI	GCNNNNNNNGC	7 cut(s)	376, 395, 992, 1229, 1271, 1439, 1754
HpyF3I	CTNAG	3 cut(s)	543, 1341, 1707
HpySE526I	ACGT	3 cut(s)	60, 98, 1621
Hsp92I	GRCGYC	2 cut(s)	81, 123
Hsp92II	CATG	8 cut(s)	202, 308, 338, 1221, 1237, 1256, 1470, 1571
HspAI	GCGC	5 cut(s)	332, 424, 485, 1397, 1748
KroI	GCCGGC	1 cut(s)	426
KroNI	GCCGGC	1 cut(s)	428
Ksp22I	TGATCA	2 cut(s)	819, 1018
Kzo9I	GATC	8 cut(s)	796, 819, 904, 961, 1018, 1132, 1345, 1558
LmnI	GCTCC	4 cut(s)	547, 1504, 1675, 1755
Lsp1109I	GCAGC	6 cut(s)	294, 617, 817, 1277, 1420, 1762
LweI	GCATC	7 cut(s)	309, 573, 956, 1105, 1135, 1345, 1762
MaeI	CTAG	3 cut(s)	23, 500, 1478
MaeII	ACGT	3 cut(s)	60, 98, 1621
MalI	GATC	8 cut(s)	798, 821, 906, 963, 1020, 1134, 1347, 1560
MboI	GATC	8 cut(s)	796, 819, 904, 961, 1018, 1132, 1345, 1558
MfeI	CAATTG	1 cut(s)	1069
MflI	RGATCY	3 cut(s)	961, 1132, 1345
MhlI	GDGCHC	1 cut(s)	1068
MlsI	TGGCCA	1 cut(s)	1274
MluNI	TGGCCA	1 cut(s)	1274
MlyI	GAGTC	3 cut(s)	110, 200, 1184
MmeI	TCCRAC	3 cut(s)	144, 1605, 1809
Mox20I	TGGCCA	1 cut(s)	1274
Mph1103I	ATGCAT	1 cut(s)	1468
MroNI	GCCGGC	1 cut(s)	426
MscI	TGGCCA	1 cut(s)	1274
MseI	TTAA	4 cut(s)	639, 1325, 1449, 1794
Msp20I	TGGCCA	1 cut(s)	1274
MspI	CCGG	4 cut(s)	71, 169, 427, 1673
MspR9I	CCNGG	4 cut(s)	234, 779, 1662, 1754
MunI	CAATTG	1 cut(s)	1069
Mva1269I	GAATGC	2 cut(s)	1291, 1460
MvaI	CCWGG	4 cut(s)	234, 779, 1662, 1754
MvnI	CGCG	2 cut(s)	485, 1399
MwoI	GCNNNNNNNGC	7 cut(s)	376, 395, 992, 1229, 1271, 1439, 1754
NaeI	GCCGGC	1 cut(s)	428
NcoI	CCATGG	2 cut(s)	198, 1233
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	8 cut(s)	796, 819, 904, 961, 1018, 1132, 1345, 1558
NgoMIV	GCCGGC	1 cut(s)	426
NlaIII	CATG	8 cut(s)	202, 308, 338, 1221, 1237, 1256, 1470, 1571
NlaIV	GGNNCC	4 cut(s)	15, 1347, 1370, 1506
NmeAIII	GCCGAG	1 cut(s)	1566
NsbI	TGCGCA	1 cut(s)	333
NsiI	ATGCAT	1 cut(s)	1468
NspI	RCATGY	1 cut(s)	338
PaeI	GCATGC	1 cut(s)	338
PaqCI	CACCTGC	1 cut(s)	857
PctI	GAATGC	2 cut(s)	1291, 1460
PdiI	GCCGGC	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	559, 578
PflMI	CCANNNNNTGG	1 cut(s)	1218
PfoI	TCCNGGA	1 cut(s)	777
PleI	GAGTC	3 cut(s)	110, 199, 1184
PmaCI	CACGTG	1 cut(s)	99
PmlI	CACGTG	1 cut(s)	99
PpsI	GAGTC	3 cut(s)	110, 199, 1184
Ppu21I	YACGTR	1 cut(s)	99
PsiI	TTATAA	1 cut(s)	1178
Psp124BI	GAGCTC	1 cut(s)	1068
Psp6I	CCWGG	4 cut(s)	232, 777, 1660, 1752
PspCI	CACGTG	1 cut(s)	99
PspFI	CCCAGC	2 cut(s)	370, 872
PspGI	CCWGG	4 cut(s)	232, 777, 1660, 1752
PspN4I	GGNNCC	4 cut(s)	15, 1347, 1370, 1506
PspPI	GGNCC	4 cut(s)	171, 209, 429, 1536
PsrI	GAACNNNNNNTAC	2 cut(s)	838, 870
PstI	CTGCAG	3 cut(s)	657, 904, 1438
PstNI	CAGNNNCTG	2 cut(s)	370, 872
PsuI	RGATCY	3 cut(s)	961, 1132, 1345
RsaI	GTAC	2 cut(s)	1424, 1598
RsaNI	GTAC	2 cut(s)	1423, 1597
SacI	GAGCTC	1 cut(s)	1068
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	4 cut(s)	639, 1325, 1449, 1794
Sau3AI	GATC	8 cut(s)	796, 819, 904, 961, 1018, 1132, 1345, 1558
Sau96I	GGNCC	4 cut(s)	171, 209, 429, 1536
SchI	GAGTC	3 cut(s)	110, 200, 1184
ScrFI	CCNGG	4 cut(s)	234, 779, 1662, 1754
SduI	GDGCHC	1 cut(s)	1068
SfaNI	GCATC	7 cut(s)	309, 573, 956, 1105, 1135, 1345, 1762
SfcI	CTRYAG	3 cut(s)	653, 900, 1434
SinI	GGWCC	2 cut(s)	171, 209
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SphI	GCATGC	1 cut(s)	338
SsiI	CCGC	8 cut(s)	45, 48, 84, 126, 813, 1052, 1517, 1600
SspMI	CTAG	3 cut(s)	23, 500, 1478
SstI	GAGCTC	1 cut(s)	1068
StyD4I	CCNGG	4 cut(s)	232, 777, 1660, 1752
StyI	CCWWGG	6 cut(s)	39, 198, 724, 1110, 1233, 1626
TaaI	ACNGT	2 cut(s)	762, 1322
TaiI	ACGT	3 cut(s)	63, 101, 1624
TaqI	TCGA	4 cut(s)	63, 566, 581, 1740
TauI	GCSGC	5 cut(s)	47, 50, 86, 128, 1055
TfiI	GAWTC	2 cut(s)	559, 578
Tru1I	TTAA	4 cut(s)	639, 1325, 1449, 1794
Tru9I	TTAA	4 cut(s)	639, 1325, 1449, 1794
TscAI	CASTG	4 cut(s)	471, 494, 1282, 1494
TseI	GCWGC	6 cut(s)	282, 605, 830, 1265, 1433, 1775
TspDTI	ATGAA	8 cut(s)	293, 334, 467, 543, 972, 1176, 1373, 1632
TspRI	CASTG	4 cut(s)	471, 494, 1282, 1494
Van91I	CCANNNNNTGG	1 cut(s)	1218
VpaK11BI	GGWCC	2 cut(s)	171, 209
XagI	CCTNNNNNAGG	2 cut(s)	969, 1295
XapI	RAATTY	3 cut(s)	178, 474, 751
XceI	RCATGY	1 cut(s)	338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1039
XmiI	GTMKAC	4 cut(s)	63, 1079, 1527, 1805
XspI	CTAG	3 cut(s)	23, 500, 1478
Zsp2I	ATGCAT	1 cut(s)	1468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.