Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005455

Physical Location & Seq

Genomic Coordinates Reverse (-)

21535213 .. 21536388

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30717

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTCCACACGATATGCTGTTGCAATACACCGAACCAAGGATGCAGAACGGTATCAAGATCCCAGCGCCTTGGCAGGAAGTGAAATGGCTTCAGTTACAAGAGATGGAGAGACTGTTTCTGTTGAACTTCACATAGCATGGGCAGGGCTTGCAATGGTCCACAAAGCCCAACATGAGATTTCAGCAGCATTTGACACTGAACATAATGCACTGATAGAGACTGAGAACACACTGATTACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035327 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_19 TPR_2 TPR_7 TPR_8

Protein Analysis

81

Amino Acids

8.84

Weight (kDa)

5.15

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63200 AT5G63200
fragaria_vesca	FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030
malus_domestica	MD06G1160400.v1.1
prunus_persica	Prupe.5G160000_v2.0.a1
pyrus_communis	pycom06g14350
rosa_chinensis	RchiOBHm_Chr5g0027621 RchiOBHm_Chr5g0027631 RchiOBHm_Chr7g0191501
rosa_laevigata	RLG00000004443
rosa_multiflora	Rmu_co8226669.1_g000001 Rmu_sc0002661.1_g000013 Rmu_sc0010599.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438440 Rroxscaffold_3G00263740
rosa_rugosa	Rorug05G0100300 Rorug06G0510500
rosa_samantha	Rh5CG212600 Rh5DG194500 Rh7AG118900 Rh7BG121000 Rh7CG123700 Rh7DG121800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	125
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Alw26I	GTCTC	2 cut(s)	104, 212
AlwI	GGATC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	104, 212
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmsI	GCATC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	36, 69
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	36, 69
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	2 cut(s)	104, 212
Bsp143I	GATC	1 cut(s)	58
BspCNI	CTCAG	1 cut(s)	214
BspPI	GGATC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	36, 69
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	2 cut(s)	36, 69
Bst4CI	ACNGT	2 cut(s)	51, 115
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	2 cut(s)	104, 212
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	46
BtsIMutI	CAGTG	3 cut(s)	195, 209, 230
Cac8I	GCNNGC	1 cut(s)	150
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	157
CviAII	CATG	2 cut(s)	138, 173
CviJI	RGCY	4 cut(s)	89, 148, 167, 242
CviKI_1	RGCY	4 cut(s)	89, 148, 167, 242
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	36, 69
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	75
EcoT14I	CCWWGG	2 cut(s)	36, 69
ErhI	CCWWGG	2 cut(s)	36, 69
FaeI	CATG	2 cut(s)	141, 176
FaiI	YATR	5 cut(s)	15, 134, 139, 174, 204
FatI	CATG	2 cut(s)	137, 172
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	186
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	186
GsaI	CCCAGC	1 cut(s)	66
HaeII	RGCGCY	1 cut(s)	69
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	141, 176
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
Hpy166II	GTNNAC	2 cut(s)	6, 160
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	2 cut(s)	6, 160
HpyCH4III	ACNGT	2 cut(s)	51, 115
HpyCH4V	TGCA	4 cut(s)	23, 44, 152, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	141, 176
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	58
LpnPI	CCDG	3 cut(s)	60, 76, 129
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	1 cut(s)	31
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MflI	RGATCY	1 cut(s)	58
MseI	TTAA	1 cut(s)	244
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	2 cut(s)	141, 176
PkrI	GCNGC	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	244
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	157
SetI	ASST	1 cut(s)	244
SfaNI	GCATC	1 cut(s)	31
SinI	GGWCC	1 cut(s)	157
StyI	CCWWGG	2 cut(s)	36, 69
TaaI	ACNGT	2 cut(s)	51, 115
Tru1I	TTAA	1 cut(s)	244
Tru9I	TTAA	1 cut(s)	244
TscAI	CASTG	3 cut(s)	202, 216, 237
TseI	GCWGC	1 cut(s)	185
TspRI	CASTG	3 cut(s)	202, 216, 237
VpaK11BI	GGWCC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.