Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005455

Physical Location & Seq

Genomic Coordinates Forward (+)

57594021 .. 57597752

Gene Structure 3732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

ATGTCGGGACAGGAACCCCAACTAGCTAACCACCACCCCAAGGCCGCCGCCAATCTCAACGTCGACCCACCGGAAACCGACGCCGCCGTCCCGTCCACGTGTCATCCCCCGAGGGACTCCGACACCGCCGATGGCGAAGCTAAAAGATTGACCAAATTGGGAAAAAGCCGGTCCAGAAATTTCAAGGTGGAGTCCCCCATGGATTATGGACCTGACCCGGACGGCTACTTGCCTGGTCAACCCGTCTCTTCTTCTTCTTCCTCCCGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTGGTTCATGTTGCGAGGAAGATGCCGAAAAATGCGCATGCCCATTTCATTCTGGGACTAATGTATCAGAGGCTGGGCCAACCTTCAAAGGCTGTTTTGGCATATGAGAAGGCCGAAGAGATTTTGCGCCGGCCCGAGGTTGACATTGATAGGACAGACTTGCTTTCACTGGTTCAAATTCATCATGCGCAGTGTATTATGCTAGATAGTTCGGTGGATGGTAGTTCGGATAAAGAACTTGAACCTCAGGAGCTTGAGGAGATTCTCTCGAAACTAAAAGAGTCGATGCAGTCAGATGTAAGACAGGCAGCGGTATGGAATACTCTCGGTTTGATACTGCTTAAAACTGGCCGTCTGCAGAGTGCCATTTCAGTATTGTCATCTTTGTTAGCATTTGCCCATACCAACTATGATTGCCTTGCAAACCTTGGGATTGCTTACCTTCAAAGATATGGTTCAGTTGTTGCAGGTGCTGGGGCAAATGCTGGTGGAGATGCTTCTGCAGATCACATTTCTGCTATCAATGTTGCAAAGGAGTGTTTGTTAGCATCCTTGAATGAAGATCCTAAAGCAGGACATATCTGGGGTAATCTTGCAAATGCCTATTATATGACTGGTGATCATAGAAGTTCCAGCAAGTGCTTGGAGAAGGCGGCCAAATTAGAGCTCAATTGTATGTCTACACGATATGCTGTTGCAATGCACCGAACCAAGGATGCAGAACGGCATCAAGATCGCAGCGAACTTTCCTGGGCAGGAAATGAAATGGCTTCAGTTATAAGAGATGGAGACTCTGTTTCCGTTGAACTTCCCATAGCATGGGCAGGGCTTGCAATGGTTCACAAAGCCCAGCATGAGATTTCAGCAGCATTTGGCACTGAACCCCTGACAGAGGTAGAAGAACACGCTGATTACAGTTTAAAACAGGCAATAGCTGAGGATCCAGATGATGCTGTGCAATGGCACCAGCTTGGTCTTCATAGCCTTTGTGCACGACAATTCAAAAACTCTCAAAAATACCTCAAAGCTGCAGTTGCCCGTTTTAAAGAATGCAGTTATGCATGGTCAAATCTAGGTATCTCACTGCAACTATCGGAGGAGCCTTCACAAGCGGAAGAAGTATACATGAGGGCCTTGTCATTGGCGACAACTGATCTTGCCCATGCTATATTCTCCAACCTCGGCAATCTGTACCGCCAGCAGAAGCATTATGAACGTGCCAAGGCAATGTTCACGAAATCTCTTGAACTCCAGCCTGGCTATGCTCCGGCATTTAATAATTTGGGTCTTGTATTTGTTGCTGAGGGTCAATGGGAAGAAGCAAAGTTCTGTTTTGACAAGGCTCTCCAGGCAGACCCAATGATGGATGCTGCCAAATCCAACTTGATTAAAGCTGTGTCTACATCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035327 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_19 TPR_2 TPR_7 TPR_8

Protein Analysis

569

Amino Acids

62.34

Weight (kDa)

5.91

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	453 - 517	2.4e-07	Tetratricopeptide repeat
TPR_12	PF13424	488 - 550	2.7e-07	Tetratricopeptide repeat
TPR_1	PF00515	489 - 520	1.6e-06	Tetratricopeptide repeat
TPR_1	PF00515	521 - 552	3.7e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63200 AT5G63200
fragaria_vesca	FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030
malus_domestica	MD06G1160400.v1.1
prunus_persica	Prupe.5G160000_v2.0.a1
pyrus_communis	pycom06g14350
rosa_chinensis	RchiOBHm_Chr5g0027621 RchiOBHm_Chr5g0027631 RchiOBHm_Chr7g0191501
rosa_laevigata	RLG00000004443
rosa_multiflora	Rmu_co8226669.1_g000001 Rmu_sc0002661.1_g000013 Rmu_sc0010599.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438440 Rroxscaffold_3G00263740
rosa_rugosa	Rorug05G0100300 Rorug06G0510500
rosa_samantha	Rh5CG212600 Rh5DG194500 Rh7AG118900 Rh7BG121000 Rh7CG123700 Rh7DG121800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1076
AarI	CACCTGC	1 cut(s)	755
AasI	GACNNNNNNGTC	1 cut(s)	86
Acc16I	TGCGCA	2 cut(s)	333, 486
Acc36I	ACCTGC	1 cut(s)	755
AccB1I	GGYRCC	1 cut(s)	1260
AccB7I	CCANNNNNTGG	1 cut(s)	1116
AccI	GTMKAC	4 cut(s)	63, 977, 1419, 1697
AciI	CCGC	8 cut(s)	45, 48, 84, 126, 608, 950, 1409, 1492
AclWI	GGATC	3 cut(s)	854, 1232, 1245
AcoI	YGGCCR	2 cut(s)	646, 951
AcsI	RAATTY	2 cut(s)	178, 474
AcuI	CTGAAG	1 cut(s)	1053
AcvI	CACGTG	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	1490
AfiI	CCNNNNNNNGG	7 cut(s)	40, 433, 869, 1009, 1116, 1189, 1660
AflIII	ACRYGT	1 cut(s)	98
AgsI	TTSAA	9 cut(s)	184, 384, 473, 539, 743, 853, 1103, 1300, 1544
AjnI	CCWGG	4 cut(s)	232, 1046, 1552, 1644
AjuI	GAANNNNNNNTTGG	2 cut(s)	1511, 1543
AluBI	AGCT	8 cut(s)	26, 140, 550, 964, 1232, 1267, 1325, 1691
AluI	AGCT	8 cut(s)	26, 140, 550, 964, 1232, 1267, 1325, 1691
Alw21I	GWGCWC	2 cut(s)	966, 1291
Alw26I	GTCTC	2 cut(s)	250, 1080
Alw44I	GTGCAC	1 cut(s)	1287
AlwI	GGATC	3 cut(s)	854, 1232, 1245
AlwNI	CAGNNNCTG	2 cut(s)	370, 770
Ama87I	CYCGRG	2 cut(s)	109, 431
AoxI	GGCC	7 cut(s)	42, 373, 408, 428, 646, 951, 1428
ApaLI	GTGCAC	1 cut(s)	1287
ApeKI	GCWGC	6 cut(s)	282, 605, 1035, 1163, 1325, 1667
ApoI	RAATTY	2 cut(s)	178, 474
AspLEI	GCGC	3 cut(s)	334, 426, 487
AspS9I	GGNCC	5 cut(s)	171, 209, 373, 429, 1428
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	926
AvaI	CYCGRG	2 cut(s)	109, 431
AvaII	GGWCC	2 cut(s)	171, 209
AxyI	CCTNAGG	1 cut(s)	543
BaeGI	GKGCMC	1 cut(s)	1291
BaeI	ACNNNNGTAYC	2 cut(s)	344, 377
BamHI	GGATCC	1 cut(s)	1237
BanI	GGYRCC	1 cut(s)	1260
BanII	GRGCYC	1 cut(s)	966
BbrPI	CACGTG	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	1265
Bbv12I	GWGCWC	2 cut(s)	966, 1291
BbvCI	CCTCAGC	2 cut(s)	1233, 1599
BbvI	GCAGC	6 cut(s)	294, 617, 1047, 1175, 1312, 1654
BccI	CCATC	4 cut(s)	125, 509, 1076, 1654
BceAI	ACGGC	4 cut(s)	71, 238, 633, 1037
BcgI	CGANNNNNNTGC	4 cut(s)	301, 335, 1013, 1047
BciT130I	CCWGG	4 cut(s)	234, 1048, 1554, 1646
BclI	TGATCA	1 cut(s)	916
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	2 cut(s)	250, 1080
BfaI	CTAG	3 cut(s)	23, 500, 1370
BfmI	CTRYAG	3 cut(s)	653, 798, 1326
BfuAI	ACCTGC	1 cut(s)	755
Bme1390I	CCNGG	5 cut(s)	218, 234, 1048, 1554, 1646
Bme18I	GGWCC	2 cut(s)	171, 209
BmeT110I	CYCGRG	2 cut(s)	109, 431
BmgT120I	GGNCC	5 cut(s)	171, 209, 373, 429, 1428
BmiI	GGNNCC	4 cut(s)	15, 1239, 1262, 1398
BmrFI	CCNGG	5 cut(s)	218, 234, 1048, 1554, 1646
BmsI	GCATC	8 cut(s)	309, 573, 781, 854, 1003, 1033, 1237, 1654
BpiI	GAAGAC	1 cut(s)	1265
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpmI	CTGGAG	2 cut(s)	1532, 1628
Bpu10I	CCTNAGC	2 cut(s)	1233, 1599
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	9 cut(s)	39, 110, 198, 432, 724, 1008, 1047, 1477, 1518
BsaWI	WCCGGW	1 cut(s)	70
BsaXI	ACNNNNNCTCC	4 cut(s)	824, 854, 1077, 1107
Bsc4I	CCNNNNNNNGG	7 cut(s)	40, 433, 869, 1009, 1116, 1189, 1660
Bse118I	RCCGGY	2 cut(s)	168, 426
Bse1I	ACTGG	4 cut(s)	298, 471, 649, 916
Bse21I	CCTNAGG	1 cut(s)	543
Bse3DI	GCAATG	4 cut(s)	1002, 1137, 1262, 1530
BseBI	CCWGG	4 cut(s)	234, 1048, 1554, 1646
BseDI	CCNNGG	9 cut(s)	39, 110, 198, 432, 724, 1008, 1047, 1477, 1518
BseGI	GGATG	5 cut(s)	103, 520, 845, 1018, 1669
BseLI	CCNNNNNNNGG	7 cut(s)	40, 433, 869, 1009, 1116, 1189, 1660
BseMI	GCAATG	4 cut(s)	1002, 1137, 1262, 1530
BseMII	CTCAG	3 cut(s)	557, 1224, 1590
BseNI	ACTGG	4 cut(s)	298, 471, 649, 916
BseRI	GAGGAG	2 cut(s)	569, 1409
BseSI	GKGCMC	1 cut(s)	1291
BseXI	GCAGC	6 cut(s)	294, 617, 1047, 1175, 1312, 1654
BseYI	CCCAGC	3 cut(s)	370, 770, 1146
BshFI	GGCC	7 cut(s)	44, 375, 410, 430, 648, 953, 1430
BshNI	GGYRCC	1 cut(s)	1260
BsiHKAI	GWGCWC	2 cut(s)	966, 1291
BsiHKCI	CYCGRG	2 cut(s)	109, 431
BsiSI	CCGG	5 cut(s)	71, 169, 218, 427, 1565
BslFI	GGGAC	5 cut(s)	21, 74, 128, 178, 366
BslI	CCNNNNNNNGG	7 cut(s)	40, 433, 869, 1009, 1116, 1189, 1660
BsmAI	GTCTC	2 cut(s)	250, 1080
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	5 cut(s)	21, 74, 128, 178, 366
BsmI	GAATGC	1 cut(s)	1352
BsnI	GGCC	7 cut(s)	44, 375, 410, 430, 648, 953, 1430
BsoBI	CYCGRG	2 cut(s)	109, 431
Bsp1286I	GDGCHC	2 cut(s)	966, 1291
Bsp143I	GATC	6 cut(s)	802, 859, 916, 1030, 1237, 1450
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	8 cut(s)	45, 48, 84, 126, 608, 950, 1409, 1492
BspANI	GGCC	7 cut(s)	44, 375, 410, 430, 648, 953, 1430
BspCNI	CTCAG	3 cut(s)	556, 1225, 1591
BspLI	GGNNCC	4 cut(s)	15, 1239, 1262, 1398
BspMAI	CTGCAG	3 cut(s)	657, 802, 1330
BspMI	ACCTGC	1 cut(s)	755
BspPI	GGATC	3 cut(s)	854, 1232, 1245
BspT107I	GGYRCC	1 cut(s)	1260
BsrDI	GCAATG	4 cut(s)	1002, 1137, 1262, 1530
BsrFI	RCCGGY	2 cut(s)	168, 426
BsrI	ACTGG	4 cut(s)	298, 471, 649, 916
BssAI	RCCGGY	2 cut(s)	168, 426
BssECI	CCNNGG	9 cut(s)	39, 110, 198, 432, 724, 1008, 1047, 1477, 1518
BssMI	GATC	6 cut(s)	802, 859, 916, 1030, 1237, 1450
BssNAI	GTATAC	1 cut(s)	1420
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	5 cut(s)	39, 198, 724, 1008, 1518
Bst1107I	GTATAC	1 cut(s)	1420
Bst2UI	CCWGG	4 cut(s)	234, 1048, 1554, 1646
Bst4CI	ACNGT	1 cut(s)	1214
Bst6I	CTCTTC	2 cut(s)	253, 408
BstACI	GRCGYC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	1127
BstBAI	YACGTR	1 cut(s)	99
BstC8I	GCNNGC	4 cut(s)	336, 428, 1128, 1496
BstDEI	CTNAG	3 cut(s)	543, 1233, 1599
BstDSI	CCRYGG	1 cut(s)	198
BstENI	CCTNNNNNAGG	2 cut(s)	867, 1187
BstF5I	GGATG	5 cut(s)	103, 520, 845, 1018, 1669
BstHHI	GCGC	3 cut(s)	334, 426, 487
BstKTI	GATC	6 cut(s)	805, 862, 919, 1033, 1240, 1453
BstMAI	GTCTC	2 cut(s)	250, 1080
BstMBI	GATC	6 cut(s)	802, 859, 916, 1030, 1237, 1450
BstMWI	GCNNNNNNNGC	4 cut(s)	395, 1127, 1331, 1646
BstNI	CCWGG	4 cut(s)	234, 1048, 1554, 1646
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	5 cut(s)	216, 232, 1046, 1552, 1644
BstSFI	CTRYAG	3 cut(s)	653, 798, 1326
BstSLI	GKGCMC	1 cut(s)	1291
BstV1I	GCAGC	6 cut(s)	294, 617, 1047, 1175, 1312, 1654
BstV2I	GAAGAC	1 cut(s)	1265
BstX2I	RGATCY	2 cut(s)	859, 1237
BstYI	RGATCY	2 cut(s)	859, 1237
BstZ17I	GTATAC	1 cut(s)	1420
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	7 cut(s)	44, 375, 410, 430, 648, 953, 1430
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	5 cut(s)	103, 520, 845, 1018, 1669
BtsI	GCAGTG	2 cut(s)	494, 1379
BtsIMutI	CAGTG	4 cut(s)	464, 494, 1173, 1379
BveI	ACCTGC	1 cut(s)	755
Cac8I	GCNNGC	4 cut(s)	336, 428, 1128, 1496
CaiI	CAGNNNCTG	2 cut(s)	370, 770
CfoI	GCGC	3 cut(s)	334, 426, 487
Cfr10I	RCCGGY	2 cut(s)	168, 426
Cfr13I	GGNCC	5 cut(s)	171, 209, 373, 429, 1428
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	1489
CviAII	CATG	9 cut(s)	199, 305, 335, 482, 1116, 1151, 1359, 1423, 1460
CviQI	GTAC	1 cut(s)	1489
DdeI	CTNAG	3 cut(s)	543, 1233, 1599
DpnI	GATC	6 cut(s)	804, 861, 918, 1032, 1239, 1452
DpnII	GATC	6 cut(s)	802, 859, 916, 1030, 1237, 1450
DraI	TTTAAA	2 cut(s)	1218, 1342
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	2 cut(s)	646, 951
Eam1104I	CTCTTC	2 cut(s)	253, 408
EarI	CTCTTC	2 cut(s)	253, 408
Ecl136II	GAGCTC	1 cut(s)	964
Eco130I	CCWWGG	5 cut(s)	39, 198, 724, 1008, 1518
Eco24I	GRGCYC	1 cut(s)	966
Eco47I	GGWCC	2 cut(s)	171, 209
Eco53kI	GAGCTC	1 cut(s)	964
Eco57I	CTGAAG	1 cut(s)	1053
Eco72I	CACGTG	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	543
Eco88I	CYCGRG	2 cut(s)	109, 431
EcoICRI	GAGCTC	1 cut(s)	964
EcoNI	CCTNNNNNAGG	2 cut(s)	867, 1187
EcoO109I	RGGNCCY	1 cut(s)	1428
EcoRII	CCWGG	4 cut(s)	232, 1046, 1552, 1644
EcoT14I	CCWWGG	5 cut(s)	39, 198, 724, 1008, 1518
EcoT22I	ATGCAT	1 cut(s)	1360
EcoT38I	GRGCYC	1 cut(s)	966
ErhI	CCWWGG	5 cut(s)	39, 198, 724, 1008, 1518
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	9 cut(s)	202, 308, 338, 485, 1119, 1154, 1362, 1426, 1463
FaqI	GGGAC	5 cut(s)	21, 74, 128, 178, 366
FatI	CATG	9 cut(s)	198, 304, 334, 481, 1115, 1150, 1358, 1422, 1459
FauNDI	CATATG	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	916
FblI	GTMKAC	4 cut(s)	63, 977, 1419, 1697
FokI	GGATG	5 cut(s)	90, 527, 832, 1025, 1676
FriOI	GRGCYC	1 cut(s)	966
FspAI	RTGCGCAY	1 cut(s)	333
FspBI	CTAG	3 cut(s)	23, 500, 1370
FspI	TGCGCA	2 cut(s)	333, 486
GlaI	GCGC	3 cut(s)	333, 425, 486
GsaI	CCCAGC	3 cut(s)	374, 774, 1150
GsuI	CTGGAG	2 cut(s)	1532, 1628
HaeIII	GGCC	7 cut(s)	44, 375, 410, 430, 648, 953, 1430
HapII	CCGG	5 cut(s)	71, 169, 218, 427, 1565
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	3 cut(s)	334, 426, 487
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	9 cut(s)	202, 308, 338, 485, 1119, 1154, 1362, 1426, 1463
Hin6I	GCGC	3 cut(s)	332, 424, 485
HinP1I	GCGC	3 cut(s)	332, 424, 485
HincII	GTYRAC	3 cut(s)	64, 239, 439
HindII	GTYRAC	3 cut(s)	64, 239, 439
HinfI	GANTC	5 cut(s)	116, 191, 559, 578, 1088
HpaII	CCGG	5 cut(s)	71, 169, 218, 427, 1565
HphI	GGTGA	1 cut(s)	926
Hpy188I	TCNGA	5 cut(s)	121, 366, 526, 592, 1393
Hpy188III	TCNNGA	9 cut(s)	6, 174, 545, 565, 1028, 1241, 1531, 1541, 1704
Hpy99I	CGWCG	2 cut(s)	65, 83
HpyAV	CCTTC	5 cut(s)	390, 400, 749, 940, 1410
HpyCH4III	ACNGT	1 cut(s)	1214
HpyCH4IV	ACGT	3 cut(s)	60, 98, 1513
HpyF10VI	GCNNNNNNNGC	4 cut(s)	395, 1127, 1331, 1646
HpyF3I	CTNAG	3 cut(s)	543, 1233, 1599
HpySE526I	ACGT	3 cut(s)	60, 98, 1513
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	9 cut(s)	202, 308, 338, 485, 1119, 1154, 1362, 1426, 1463
HspAI	GCGC	3 cut(s)	332, 424, 485
KroI	GCCGGC	1 cut(s)	426
KroNI	GCCGGC	1 cut(s)	428
Ksp22I	TGATCA	1 cut(s)	916
Kzo9I	GATC	6 cut(s)	802, 859, 916, 1030, 1237, 1450
LmnI	GCTCC	3 cut(s)	547, 1396, 1567
Lsp1109I	GCAGC	6 cut(s)	294, 617, 1047, 1175, 1312, 1654
LweI	GCATC	8 cut(s)	309, 573, 781, 854, 1003, 1033, 1237, 1654
MaeI	CTAG	3 cut(s)	23, 500, 1370
MaeII	ACGT	3 cut(s)	60, 98, 1513
MalI	GATC	6 cut(s)	804, 861, 918, 1032, 1239, 1452
MboI	GATC	6 cut(s)	802, 859, 916, 1030, 1237, 1450
MfeI	CAATTG	1 cut(s)	967
MflI	RGATCY	2 cut(s)	859, 1237
MhlI	GDGCHC	2 cut(s)	966, 1291
MluCI	AATT	7 cut(s)	155, 178, 474, 956, 967, 1295, 1576
MlyI	GAGTC	4 cut(s)	110, 200, 587, 1082
MmeI	TCCRAC	3 cut(s)	144, 1497, 1701
Mph1103I	ATGCAT	1 cut(s)	1360
MroNI	GCCGGC	1 cut(s)	426
MseI	TTAA	5 cut(s)	639, 1217, 1341, 1572, 1686
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	5 cut(s)	71, 169, 218, 427, 1565
MspR9I	CCNGG	5 cut(s)	218, 234, 1048, 1554, 1646
MunI	CAATTG	1 cut(s)	967
Mva1269I	GAATGC	1 cut(s)	1352
MvaI	CCWGG	4 cut(s)	234, 1048, 1554, 1646
MwoI	GCNNNNNNNGC	4 cut(s)	395, 1127, 1331, 1646
NaeI	GCCGGC	1 cut(s)	428
NciI	CCSGG	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	198
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	6 cut(s)	802, 859, 916, 1030, 1237, 1450
NgoMIV	GCCGGC	1 cut(s)	426
NlaIII	CATG	9 cut(s)	202, 308, 338, 485, 1119, 1154, 1362, 1426, 1463
NlaIV	GGNNCC	4 cut(s)	15, 1239, 1262, 1398
NmeAIII	GCCGAG	1 cut(s)	1458
NsbI	TGCGCA	2 cut(s)	333, 486
NsiI	ATGCAT	1 cut(s)	1360
NspI	RCATGY	1 cut(s)	338
PaeI	GCATGC	1 cut(s)	338
PaqCI	CACCTGC	1 cut(s)	755
PctI	GAATGC	1 cut(s)	1352
PdiI	GCCGGC	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	559
PflMI	CCANNNNNTGG	1 cut(s)	1116
PleI	GAGTC	4 cut(s)	110, 199, 586, 1082
PmaCI	CACGTG	1 cut(s)	99
PmlI	CACGTG	1 cut(s)	99
PpsI	GAGTC	4 cut(s)	110, 199, 586, 1082
Ppu21I	YACGTR	1 cut(s)	99
PsiI	TTATAA	1 cut(s)	1076
Psp124BI	GAGCTC	1 cut(s)	966
Psp6I	CCWGG	4 cut(s)	232, 1046, 1552, 1644
PspCI	CACGTG	1 cut(s)	99
PspFI	CCCAGC	3 cut(s)	370, 770, 1146
PspGI	CCWGG	4 cut(s)	232, 1046, 1552, 1644
PspN4I	GGNNCC	4 cut(s)	15, 1239, 1262, 1398
PspPI	GGNCC	5 cut(s)	171, 209, 373, 429, 1428
PstI	CTGCAG	3 cut(s)	657, 802, 1330
PstNI	CAGNNNCTG	2 cut(s)	370, 770
PsuI	RGATCY	2 cut(s)	859, 1237
RsaI	GTAC	1 cut(s)	1490
RsaNI	GTAC	1 cut(s)	1489
SacI	GAGCTC	1 cut(s)	966
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	5 cut(s)	639, 1217, 1341, 1572, 1686
Sau3AI	GATC	6 cut(s)	802, 859, 916, 1030, 1237, 1450
Sau96I	GGNCC	5 cut(s)	171, 209, 373, 429, 1428
SchI	GAGTC	4 cut(s)	110, 200, 587, 1082
ScrFI	CCNGG	5 cut(s)	218, 234, 1048, 1554, 1646
SduI	GDGCHC	2 cut(s)	966, 1291
SfaNI	GCATC	8 cut(s)	309, 573, 781, 854, 1003, 1033, 1237, 1654
SfcI	CTRYAG	3 cut(s)	653, 798, 1326
SinI	GGWCC	2 cut(s)	171, 209
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SphI	GCATGC	1 cut(s)	338
Sse9I	AATT	7 cut(s)	155, 178, 474, 956, 967, 1295, 1576
SsiI	CCGC	8 cut(s)	45, 48, 84, 126, 608, 950, 1409, 1492
SspMI	CTAG	3 cut(s)	23, 500, 1370
SstI	GAGCTC	1 cut(s)	966
StyD4I	CCNGG	5 cut(s)	216, 232, 1046, 1552, 1644
StyI	CCWWGG	5 cut(s)	39, 198, 724, 1008, 1518
TaaI	ACNGT	1 cut(s)	1214
TaiI	ACGT	3 cut(s)	63, 101, 1516
TaqI	TCGA	3 cut(s)	63, 566, 581
TasI	AATT	7 cut(s)	155, 178, 474, 956, 967, 1295, 1576
TauI	GCSGC	4 cut(s)	47, 50, 86, 953
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	5 cut(s)	639, 1217, 1341, 1572, 1686
Tru9I	TTAA	5 cut(s)	639, 1217, 1341, 1572, 1686
TscAI	CASTG	4 cut(s)	471, 494, 1180, 1386
TseI	GCWGC	6 cut(s)	282, 605, 1035, 1163, 1325, 1667
TspDTI	ATGAA	7 cut(s)	293, 334, 467, 870, 1074, 1265, 1524
TspGWI	ACGGA	1 cut(s)	1087
TspRI	CASTG	4 cut(s)	471, 494, 1180, 1386
Van91I	CCANNNNNTGG	1 cut(s)	1116
VneI	GTGCAC	1 cut(s)	1287
VpaK11BI	GGWCC	2 cut(s)	171, 209
XagI	CCTNNNNNAGG	2 cut(s)	867, 1187
XapI	RAATTY	2 cut(s)	178, 474
XceI	RCATGY	1 cut(s)	338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	937
XmiI	GTMKAC	4 cut(s)	63, 977, 1419, 1697
XspI	CTAG	3 cut(s)	23, 500, 1370
Zsp2I	ATGCAT	1 cut(s)	1360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.