Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005455

Physical Location & Seq

Genomic Coordinates Forward (+)

59412019 .. 59415613

Gene Structure 3595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004443

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1821 bp

ATGTCGGCACAGGAACCCCAACTAGCTAACCACCACCCCAAGGCCGCCGCCGCCAATCTCAACGTCGACCCACCGGAAACCGACGCCGCCGTCCCCTCCACCTGTCATCCCCCGAGGGACTCTGACACCGCCGAAGGCGAAGCTAAAAGATTGACCAAATTGGGAAAAAGCCGGTCCAGAAATTTCAAGGTGGAGTCCCCCATGGATTATGGACCTGACCCAGACGGCTACTTGCCCGGTCAACCCGTCTCTTCTTCTTCTTCCTCCCGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTGGTTCATGTTGCGAGGAAGATGCCGAAAAATGCGCATGCCCATTTCATTCTGGGACTAATGTATCAGAGGCTGGGTCAGCCTTCAAAGGCTGTTTTGGCATATGAGAAGGCCGAAGAGATTTTGCGCCGGCCCGAGGTTGACATTGATAGGACAGAGTTGCTTTCACTGGTTCAAATTCATCATGCGCAGTGTATTATGCTAGAGAGTTCGGTGGATGGTAGTTCGGATAAAGAACTTGAACCTCAGGAGCTTGAGGAGATTCTCTCGAAACTAAAAGAATCGATGCAGTCAGATGTAAGACAGGCAGCGGTATGGAATACTCTCGGTTTGATACTGCTTACAACTGGACGTCTGCAGAGTGCCATTTTGGTATTGTCATCTTTGTTAGCATTTGCCCCTACCAACTATGATTGCCTTGCAAACCTTGGGATTGCTTACCTTCAAAGTGGAAATTTGGAACTGTCAGAAAAATGTTTCCAGGAATTGATCCTCAAAGATCAAAATCATCCCACCGCCTTGATCAATTATGCTGCCCTTCTTTTATGTAGATATGGTTCAGTTGTTGCAGGTGCTGGGGCAAATGCTGGTGGAGGTGCTTCTGCAGATCACATTTCTGCTATCAATGTTGCAAAGGAGTGTTTGTTAGCATCCTTGAATGAAGATCCTAAAGCAGGACATATCTGGGCTAATCTTGCAAATGCCTATTATATGACTGGTGATCATAGAAGTTCCAGCAAGTGCTTGGAGAAGGCGGCCAAATTAGAGCTCAATTGTATGTCTACACGATATGCTGTTGCAATACACCGAACGAAGGATGCAGAACGGCATCAAGATCCCCACGAACTTTACTGGGCAGGAAATGAAATGGCTTCAGTTATAAGAGATGGAGACTCTGTTTCCGTCGAACTTCCCATAGCATGGGCAGGGCTTGCCATGGTTCACAAAGCCCAACATGAGATTTCAGCAGCATTGGCCACTGAACAGAATGCCCTGACAGAGGTGGAAGAACACGCTGATTACAGTTTAAAACAGGCAATAGCTGAGGATCCAGATGATGCTGTGCAATGGCACCAGCTTGGTCTTCATAGCCTTTGTGCGCGACAATTCACAAAATCTCAAAAGTACCTCAAGGCTGCAGTTGCCCGTTTTAAAGAATGCAGTTATGCATGGTCAAATCTAGGTATCTCACTGCAACTATCAGAGGAGCCTTTACAAGCGGAAGAAGTATACACGAGGGCCTTGTCATTGGCGACAACTGATCTTGCCCATGCTATATTCTCCAACCTCGGCAATCTGTACCGCCAGCAGAAGCAATATGAACGTGCCAAGGCAATGTTTACGAAATCTCTTGAACTCCAGCCTGGCTATGCTCCGGCTTTTAATAATTTGGGTCTTGTATTTGTTGCTGAGGGTCAATGGGAAGAAGCAAAGTTCTGTTTCAATAAGGCTCTCCAGGCAGACCCAATGATGGATGCTGCCAAATCCAACTTGATTAAAGCTGGGTCTGCATCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000291 GO:0000785 GO:0000956 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034655 GO:0035327 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0055087 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_16 TPR_19 TPR_2 TPR_7 TPR_8

Protein Analysis

607

Amino Acids

66.32

Weight (kDa)

5.8

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_19	PF14559	214 - 271	8e-07	Tetratricopeptide repeat
TPR_12	PF13424	490 - 554	3.6e-08	Tetratricopeptide repeat
TPR_12	PF13424	525 - 587	2.9e-09	Tetratricopeptide repeat
TPR_1	PF00515	526 - 557	2.3e-07	Tetratricopeptide repeat
TPR_19	PF14559	535 - 590	3.6e-06	Tetratricopeptide repeat
TPR_1	PF00515	558 - 589	2.9e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005455)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63200 AT5G63200
fragaria_vesca	FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030 FvH4_5g07030
malus_domestica	MD06G1160400.v1.1
prunus_persica	Prupe.5G160000_v2.0.a1
pyrus_communis	pycom06g14350
rosa_chinensis	RchiOBHm_Chr5g0027621 RchiOBHm_Chr5g0027631 RchiOBHm_Chr7g0191501
rosa_laevigata	RLG00000004443
rosa_multiflora	Rmu_co8226669.1_g000001 Rmu_sc0002661.1_g000013 Rmu_sc0010599.1_g000002
rosa_roxburghii	Rroxscaffold_157G00438440 Rroxscaffold_3G00263740
rosa_rugosa	Rorug05G0100300 Rorug06G0510500
rosa_samantha	Rh5CG212600 Rh5DG194500 Rh7AG118900 Rh7BG121000 Rh7CG123700 Rh7DG121800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1181
AarI	CACCTGC	1 cut(s)	860
AasI	GACNNNNNNGTC	1 cut(s)	89
AatII	GACGTC	1 cut(s)	655
Acc16I	TGCGCA	2 cut(s)	336, 489
Acc36I	ACCTGC	1 cut(s)	860
AccB1I	GGYRCC	1 cut(s)	1371
AccB7I	CCANNNNNTGG	1 cut(s)	1221
AccI	GTMKAC	3 cut(s)	66, 1082, 1530
AccII	CGCG	1 cut(s)	1402
AclWI	GGATC	5 cut(s)	784, 959, 1130, 1343, 1356
AcoI	YGGCCR	2 cut(s)	1056, 1275
AcsI	RAATTY	3 cut(s)	181, 477, 754
AcuI	CTGAAG	1 cut(s)	1158
AcyI	GRCGYC	2 cut(s)	84, 652
AfaI	GTAC	2 cut(s)	1427, 1601
AfiI	CCNNNNNNNGG	7 cut(s)	40, 436, 974, 1114, 1221, 1300, 1771
AgsI	TTSAA	8 cut(s)	187, 387, 476, 542, 746, 958, 1655, 1744
AjnI	CCWGG	3 cut(s)	780, 1663, 1755
AluBI	AGCT	7 cut(s)	26, 143, 553, 1069, 1343, 1378, 1802
AluI	AGCT	7 cut(s)	26, 143, 553, 1069, 1343, 1378, 1802
Alw21I	GWGCWC	1 cut(s)	1071
Alw26I	GTCTC	2 cut(s)	253, 1185
AlwI	GGATC	5 cut(s)	784, 959, 1130, 1343, 1356
AlwNI	CAGNNNCTG	2 cut(s)	373, 875
Ama87I	CYCGRG	2 cut(s)	112, 434
AoxI	GGCC	6 cut(s)	42, 411, 431, 1056, 1275, 1539
ApeKI	GCWGC	6 cut(s)	285, 608, 833, 1268, 1436, 1778
ApoI	RAATTY	3 cut(s)	181, 477, 754
AspLEI	GCGC	4 cut(s)	337, 429, 490, 1402
AspS9I	GGNCC	4 cut(s)	174, 212, 432, 1539
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	1031
AvaI	CYCGRG	2 cut(s)	112, 434
AvaII	GGWCC	2 cut(s)	174, 212
AxyI	CCTNAGG	1 cut(s)	546
BaeI	ACNNNNGTAYC	2 cut(s)	347, 380
BalI	TGGCCA	1 cut(s)	1277
BamHI	GGATCC	1 cut(s)	1348
BanI	GGYRCC	1 cut(s)	1371
BanII	GRGCYC	1 cut(s)	1071
BauI	CACGAG	1 cut(s)	1534
BbsI	GAAGAC	1 cut(s)	1376
Bbv12I	GWGCWC	1 cut(s)	1071
BbvCI	CCTCAGC	2 cut(s)	1344, 1710
BbvI	GCAGC	6 cut(s)	297, 620, 820, 1280, 1423, 1765
BccI	CCATC	3 cut(s)	512, 1181, 1765
BceAI	ACGGC	3 cut(s)	74, 241, 1142
BcgI	CGANNNNNNTGC	2 cut(s)	304, 338
BciT130I	CCWGG	3 cut(s)	782, 1665, 1757
BclI	TGATCA	2 cut(s)	822, 1021
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	2 cut(s)	253, 1185
BfaI	CTAG	3 cut(s)	23, 503, 1481
BfmI	CTRYAG	3 cut(s)	656, 903, 1437
BfuAI	ACCTGC	1 cut(s)	860
Bme1390I	CCNGG	4 cut(s)	237, 782, 1665, 1757
Bme18I	GGWCC	2 cut(s)	174, 212
BmeT110I	CYCGRG	2 cut(s)	112, 434
BmgT120I	GGNCC	4 cut(s)	174, 212, 432, 1539
BmiI	GGNNCC	4 cut(s)	15, 1350, 1373, 1509
BmrFI	CCNGG	4 cut(s)	237, 782, 1665, 1757
BmrI	ACTGGG	1 cut(s)	1162
BmsI	GCATC	7 cut(s)	312, 576, 959, 1108, 1138, 1348, 1765
BmuI	ACTGGG	1 cut(s)	1162
BpiI	GAAGAC	1 cut(s)	1376
BplI	GAGNNNNNCTC	2 cut(s)	551, 583
BpmI	CTGGAG	2 cut(s)	1643, 1739
Bpu10I	CCTNAGC	2 cut(s)	1344, 1710
BpuEI	CTTGAG	2 cut(s)	575, 1415
BpuMI	CCSGG	1 cut(s)	237
Bsa29I	ATCGAT	1 cut(s)	584
BsaBI	GATNNNNATC	1 cut(s)	804
BsaHI	GRCGYC	2 cut(s)	84, 652
BsaJI	CCNNGG	8 cut(s)	39, 113, 201, 435, 727, 1236, 1588, 1629
BsaWI	WCCGGW	1 cut(s)	73
BsaXI	ACNNNNNCTCC	4 cut(s)	929, 959, 1182, 1212
Bsc4I	CCNNNNNNNGG	7 cut(s)	40, 436, 974, 1114, 1221, 1300, 1771
Bse118I	RCCGGY	2 cut(s)	171, 429
Bse1I	ACTGG	5 cut(s)	301, 474, 652, 1021, 1157
Bse21I	CCTNAGG	1 cut(s)	546
Bse3DI	GCAATG	2 cut(s)	1373, 1641
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	3 cut(s)	782, 1665, 1757
BseCI	ATCGAT	1 cut(s)	584
BseDI	CCNNGG	8 cut(s)	39, 113, 201, 435, 727, 1236, 1588, 1629
BseGI	GGATG	6 cut(s)	106, 523, 808, 950, 1123, 1780
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	7 cut(s)	40, 436, 974, 1114, 1221, 1300, 1771
BseMI	GCAATG	2 cut(s)	1373, 1641
BseMII	CTCAG	3 cut(s)	560, 1335, 1701
BseNI	ACTGG	5 cut(s)	301, 474, 652, 1021, 1157
BseRI	GAGGAG	2 cut(s)	572, 1520
BseXI	GCAGC	6 cut(s)	297, 620, 820, 1280, 1423, 1765
BseYI	CCCAGC	3 cut(s)	373, 875, 1802
Bsh1236I	CGCG	1 cut(s)	1402
BshFI	GGCC	6 cut(s)	44, 413, 433, 1058, 1277, 1541
BshNI	GGYRCC	1 cut(s)	1371
BshVI	ATCGAT	1 cut(s)	584
BsiHKAI	GWGCWC	1 cut(s)	1071
BsiHKCI	CYCGRG	2 cut(s)	112, 434
BsiSI	CCGG	5 cut(s)	74, 172, 237, 430, 1676
BslFI	GGGAC	4 cut(s)	77, 131, 181, 369
BslI	CCNNNNNNNGG	7 cut(s)	40, 436, 974, 1114, 1221, 1300, 1771
BsmAI	GTCTC	2 cut(s)	253, 1185
BsmBI	CGTCTC	1 cut(s)	253
BsmFI	GGGAC	4 cut(s)	77, 131, 181, 369
BsmI	GAATGC	2 cut(s)	1294, 1463
BsnI	GGCC	6 cut(s)	44, 413, 433, 1058, 1277, 1541
BsoBI	CYCGRG	2 cut(s)	112, 434
Bsp1286I	GDGCHC	1 cut(s)	1071
Bsp143I	GATC	9 cut(s)	789, 799, 822, 907, 964, 1021, 1135, 1348, 1561
Bsp19I	CCATGG	2 cut(s)	201, 1236
BspANI	GGCC	6 cut(s)	44, 413, 433, 1058, 1277, 1541
BspCNI	CTCAG	3 cut(s)	559, 1336, 1702
BspDI	ATCGAT	1 cut(s)	584
BspFNI	CGCG	1 cut(s)	1402
BspLI	GGNNCC	4 cut(s)	15, 1350, 1373, 1509
BspMAI	CTGCAG	3 cut(s)	660, 907, 1441
BspMI	ACCTGC	1 cut(s)	860
BspPI	GGATC	5 cut(s)	784, 959, 1130, 1343, 1356
BspT107I	GGYRCC	1 cut(s)	1371
BsrDI	GCAATG	2 cut(s)	1373, 1641
BsrFI	RCCGGY	2 cut(s)	171, 429
BsrI	ACTGG	5 cut(s)	301, 474, 652, 1021, 1157
BssAI	RCCGGY	2 cut(s)	171, 429
BssECI	CCNNGG	8 cut(s)	39, 113, 201, 435, 727, 1236, 1588, 1629
BssMI	GATC	9 cut(s)	789, 799, 822, 907, 964, 1021, 1135, 1348, 1561
BssNAI	GTATAC	1 cut(s)	1531
BssNI	GRCGYC	2 cut(s)	84, 652
BssSI	CACGAG	1 cut(s)	1534
BssT1I	CCWWGG	5 cut(s)	39, 201, 727, 1236, 1629
Bst1107I	GTATAC	1 cut(s)	1531
Bst2BI	CACGAG	1 cut(s)	1534
Bst2UI	CCWGG	3 cut(s)	782, 1665, 1757
Bst4CI	ACNGT	2 cut(s)	765, 1325
Bst6I	CTCTTC	2 cut(s)	256, 411
BstACI	GRCGYC	2 cut(s)	84, 652
BstAPI	GCANNNNNTGC	1 cut(s)	1232
BstC8I	GCNNGC	4 cut(s)	339, 431, 1233, 1607
BstDEI	CTNAG	3 cut(s)	546, 1344, 1710
BstDSI	CCRYGG	2 cut(s)	201, 1236
BstENI	CCTNNNNNAGG	2 cut(s)	972, 1298
BstF5I	GGATG	6 cut(s)	106, 523, 808, 950, 1123, 1780
BstFNI	CGCG	1 cut(s)	1402
BstHHI	GCGC	4 cut(s)	337, 429, 490, 1402
BstKTI	GATC	9 cut(s)	792, 802, 825, 910, 967, 1024, 1138, 1351, 1564
BstMAI	GTCTC	2 cut(s)	253, 1185
BstMBI	GATC	9 cut(s)	789, 799, 822, 907, 964, 1021, 1135, 1348, 1561
BstMWI	GCNNNNNNNGC	9 cut(s)	50, 379, 398, 995, 1232, 1274, 1442, 1757, 1808
BstNI	CCWGG	3 cut(s)	782, 1665, 1757
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	4 cut(s)	235, 780, 1663, 1755
BstSFI	CTRYAG	3 cut(s)	656, 903, 1437
BstUI	CGCG	1 cut(s)	1402
BstV1I	GCAGC	6 cut(s)	297, 620, 820, 1280, 1423, 1765
BstV2I	GAAGAC	1 cut(s)	1376
BstX2I	RGATCY	3 cut(s)	964, 1135, 1348
BstYI	RGATCY	3 cut(s)	964, 1135, 1348
BstZ17I	GTATAC	1 cut(s)	1531
Bsu15I	ATCGAT	1 cut(s)	584
Bsu36I	CCTNAGG	1 cut(s)	546
BsuRI	GGCC	6 cut(s)	44, 413, 433, 1058, 1277, 1541
BsuTUI	ATCGAT	1 cut(s)	584
BtgI	CCRYGG	2 cut(s)	201, 1236
BtsCI	GGATG	6 cut(s)	106, 523, 808, 950, 1123, 1780
BtsI	GCAGTG	2 cut(s)	497, 1490
BtsIMutI	CAGTG	4 cut(s)	467, 497, 1278, 1490
BveI	ACCTGC	1 cut(s)	860
Cac8I	GCNNGC	4 cut(s)	339, 431, 1233, 1607
CaiI	CAGNNNCTG	2 cut(s)	373, 875
CfoI	GCGC	4 cut(s)	337, 429, 490, 1402
Cfr10I	RCCGGY	2 cut(s)	171, 429
Cfr13I	GGNCC	4 cut(s)	174, 212, 432, 1539
ClaI	ATCGAT	1 cut(s)	584
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	1426, 1600
CviAII	CATG	9 cut(s)	202, 308, 338, 485, 1221, 1237, 1256, 1470, 1571
CviQI	GTAC	2 cut(s)	1426, 1600
DdeI	CTNAG	3 cut(s)	546, 1344, 1710
DpnI	GATC	9 cut(s)	791, 801, 824, 909, 966, 1023, 1137, 1350, 1563
DpnII	GATC	9 cut(s)	789, 799, 822, 907, 964, 1021, 1135, 1348, 1561
DraI	TTTAAA	2 cut(s)	1329, 1453
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	2 cut(s)	1056, 1275
Eam1104I	CTCTTC	2 cut(s)	256, 411
EarI	CTCTTC	2 cut(s)	256, 411
Ecl136II	GAGCTC	1 cut(s)	1069
Eco130I	CCWWGG	5 cut(s)	39, 201, 727, 1236, 1629
Eco24I	GRGCYC	1 cut(s)	1071
Eco47I	GGWCC	2 cut(s)	174, 212
Eco53kI	GAGCTC	1 cut(s)	1069
Eco57I	CTGAAG	1 cut(s)	1158
Eco81I	CCTNAGG	1 cut(s)	546
Eco88I	CYCGRG	2 cut(s)	112, 434
EcoICRI	GAGCTC	1 cut(s)	1069
EcoNI	CCTNNNNNAGG	2 cut(s)	972, 1298
EcoO109I	RGGNCCY	1 cut(s)	1539
EcoRII	CCWGG	3 cut(s)	780, 1663, 1755
EcoT14I	CCWWGG	5 cut(s)	39, 201, 727, 1236, 1629
EcoT22I	ATGCAT	1 cut(s)	1471
EcoT38I	GRGCYC	1 cut(s)	1071
ErhI	CCWWGG	5 cut(s)	39, 201, 727, 1236, 1629
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	9 cut(s)	205, 311, 341, 488, 1224, 1240, 1259, 1473, 1574
FaqI	GGGAC	4 cut(s)	77, 131, 181, 369
FatI	CATG	9 cut(s)	201, 307, 337, 484, 1220, 1236, 1255, 1469, 1570
FauNDI	CATATG	1 cut(s)	403
FbaI	TGATCA	2 cut(s)	822, 1021
FblI	GTMKAC	3 cut(s)	66, 1082, 1530
FokI	GGATG	6 cut(s)	93, 530, 795, 937, 1130, 1787
FriOI	GRGCYC	1 cut(s)	1071
FspAI	RTGCGCAY	1 cut(s)	336
FspBI	CTAG	3 cut(s)	23, 503, 1481
FspI	TGCGCA	2 cut(s)	336, 489
GlaI	GCGC	4 cut(s)	336, 428, 489, 1401
GsaI	CCCAGC	3 cut(s)	377, 879, 1806
GsuI	CTGGAG	2 cut(s)	1643, 1739
HaeIII	GGCC	6 cut(s)	44, 413, 433, 1058, 1277, 1541
HapII	CCGG	5 cut(s)	74, 172, 237, 430, 1676
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	4 cut(s)	337, 429, 490, 1402
Hin1I	GRCGYC	2 cut(s)	84, 652
Hin1II	CATG	9 cut(s)	205, 311, 341, 488, 1224, 1240, 1259, 1473, 1574
Hin6I	GCGC	4 cut(s)	335, 427, 488, 1400
HinP1I	GCGC	4 cut(s)	335, 427, 488, 1400
HincII	GTYRAC	3 cut(s)	67, 242, 442
HindII	GTYRAC	3 cut(s)	67, 242, 442
HinfI	GANTC	5 cut(s)	119, 194, 562, 581, 1193
HpaII	CCGG	5 cut(s)	74, 172, 237, 430, 1676
HphI	GGTGA	1 cut(s)	1031
Hpy166II	GTNNAC	7 cut(s)	67, 242, 442, 1083, 1243, 1531, 1641
Hpy188I	TCNGA	6 cut(s)	124, 369, 529, 595, 769, 1504
Hpy188III	TCNNGA	7 cut(s)	177, 548, 568, 1133, 1352, 1652, 1815
Hpy8I	GTNNAC	7 cut(s)	67, 242, 442, 1083, 1243, 1531, 1641
Hpy99I	CGWCG	3 cut(s)	68, 86, 1208
HpyAV	CCTTC	7 cut(s)	128, 393, 403, 752, 848, 1045, 1108
HpyCH4III	ACNGT	2 cut(s)	765, 1325
HpyCH4IV	ACGT	3 cut(s)	63, 652, 1624
HpyF10VI	GCNNNNNNNGC	9 cut(s)	50, 379, 398, 995, 1232, 1274, 1442, 1757, 1808
HpyF3I	CTNAG	3 cut(s)	546, 1344, 1710
HpySE526I	ACGT	3 cut(s)	63, 652, 1624
Hsp92I	GRCGYC	2 cut(s)	84, 652
Hsp92II	CATG	9 cut(s)	205, 311, 341, 488, 1224, 1240, 1259, 1473, 1574
HspAI	GCGC	4 cut(s)	335, 427, 488, 1400
KroI	GCCGGC	1 cut(s)	429
KroNI	GCCGGC	1 cut(s)	431
Ksp22I	TGATCA	2 cut(s)	822, 1021
Kzo9I	GATC	9 cut(s)	789, 799, 822, 907, 964, 1021, 1135, 1348, 1561
LmnI	GCTCC	3 cut(s)	550, 1507, 1678
Lsp1109I	GCAGC	6 cut(s)	297, 620, 820, 1280, 1423, 1765
LweI	GCATC	7 cut(s)	312, 576, 959, 1108, 1138, 1348, 1765
MaeI	CTAG	3 cut(s)	23, 503, 1481
MaeII	ACGT	3 cut(s)	63, 652, 1624
MalI	GATC	9 cut(s)	791, 801, 824, 909, 966, 1023, 1137, 1350, 1563
MboI	GATC	9 cut(s)	789, 799, 822, 907, 964, 1021, 1135, 1348, 1561
MfeI	CAATTG	1 cut(s)	1072
MflI	RGATCY	3 cut(s)	964, 1135, 1348
MhlI	GDGCHC	1 cut(s)	1071
MlsI	TGGCCA	1 cut(s)	1277
MluNI	TGGCCA	1 cut(s)	1277
MlyI	GAGTC	3 cut(s)	113, 203, 1187
MmeI	TCCRAC	2 cut(s)	1608, 1812
Mox20I	TGGCCA	1 cut(s)	1277
Mph1103I	ATGCAT	1 cut(s)	1471
MroNI	GCCGGC	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	1277
MseI	TTAA	4 cut(s)	1328, 1452, 1683, 1797
Msp20I	TGGCCA	1 cut(s)	1277
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	5 cut(s)	74, 172, 237, 430, 1676
MspR9I	CCNGG	4 cut(s)	237, 782, 1665, 1757
MunI	CAATTG	1 cut(s)	1072
Mva1269I	GAATGC	2 cut(s)	1294, 1463
MvaI	CCWGG	3 cut(s)	782, 1665, 1757
MvnI	CGCG	1 cut(s)	1402
MwoI	GCNNNNNNNGC	9 cut(s)	50, 379, 398, 995, 1232, 1274, 1442, 1757, 1808
NaeI	GCCGGC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	237
NcoI	CCATGG	2 cut(s)	201, 1236
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	9 cut(s)	789, 799, 822, 907, 964, 1021, 1135, 1348, 1561
NgoMIV	GCCGGC	1 cut(s)	429
NlaIII	CATG	9 cut(s)	205, 311, 341, 488, 1224, 1240, 1259, 1473, 1574
NlaIV	GGNNCC	4 cut(s)	15, 1350, 1373, 1509
NmeAIII	GCCGAG	1 cut(s)	1569
NsbI	TGCGCA	2 cut(s)	336, 489
NsiI	ATGCAT	1 cut(s)	1471
NspI	RCATGY	1 cut(s)	341
PaeI	GCATGC	1 cut(s)	341
PaqCI	CACCTGC	1 cut(s)	860
PctI	GAATGC	2 cut(s)	1294, 1463
PdiI	GCCGGC	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	562, 581
PflMI	CCANNNNNTGG	1 cut(s)	1221
PfoI	TCCNGGA	1 cut(s)	780
PleI	GAGTC	3 cut(s)	113, 202, 1187
PpsI	GAGTC	3 cut(s)	113, 202, 1187
PsiI	TTATAA	1 cut(s)	1181
Psp124BI	GAGCTC	1 cut(s)	1071
Psp6I	CCWGG	3 cut(s)	780, 1663, 1755
PspFI	CCCAGC	3 cut(s)	373, 875, 1802
PspGI	CCWGG	3 cut(s)	780, 1663, 1755
PspN4I	GGNNCC	4 cut(s)	15, 1350, 1373, 1509
PspPI	GGNCC	4 cut(s)	174, 212, 432, 1539
PsrI	GAACNNNNNNTAC	2 cut(s)	841, 873
PstI	CTGCAG	3 cut(s)	660, 907, 1441
PstNI	CAGNNNCTG	2 cut(s)	373, 875
PsuI	RGATCY	3 cut(s)	964, 1135, 1348
RsaI	GTAC	2 cut(s)	1427, 1601
RsaNI	GTAC	2 cut(s)	1426, 1600
SacI	GAGCTC	1 cut(s)	1071
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	4 cut(s)	1328, 1452, 1683, 1797
Sau3AI	GATC	9 cut(s)	789, 799, 822, 907, 964, 1021, 1135, 1348, 1561
Sau96I	GGNCC	4 cut(s)	174, 212, 432, 1539
SchI	GAGTC	3 cut(s)	113, 203, 1187
ScrFI	CCNGG	4 cut(s)	237, 782, 1665, 1757
SduI	GDGCHC	1 cut(s)	1071
SfaNI	GCATC	7 cut(s)	312, 576, 959, 1108, 1138, 1348, 1765
SfcI	CTRYAG	3 cut(s)	656, 903, 1437
SinI	GGWCC	2 cut(s)	174, 212
SmlI	CTYRAG	2 cut(s)	554, 1430
SmoI	CTYRAG	2 cut(s)	554, 1430
SphI	GCATGC	1 cut(s)	341
SspMI	CTAG	3 cut(s)	23, 503, 1481
SstI	GAGCTC	1 cut(s)	1071
StyD4I	CCNGG	4 cut(s)	235, 780, 1663, 1755
StyI	CCWWGG	5 cut(s)	39, 201, 727, 1236, 1629
TaaI	ACNGT	2 cut(s)	765, 1325
TaiI	ACGT	3 cut(s)	66, 655, 1627
TaqI	TCGA	4 cut(s)	66, 569, 584, 1206
TauI	GCSGC	5 cut(s)	47, 50, 53, 89, 1058
TfiI	GAWTC	2 cut(s)	562, 581
Tru1I	TTAA	4 cut(s)	1328, 1452, 1683, 1797
Tru9I	TTAA	4 cut(s)	1328, 1452, 1683, 1797
TscAI	CASTG	4 cut(s)	474, 497, 1285, 1497
TseI	GCWGC	6 cut(s)	285, 608, 833, 1268, 1436, 1778
TspDTI	ATGAA	7 cut(s)	296, 337, 470, 975, 1179, 1376, 1635
TspGWI	ACGGA	1 cut(s)	1192
TspRI	CASTG	4 cut(s)	474, 497, 1285, 1497
Van91I	CCANNNNNTGG	1 cut(s)	1221
VpaK11BI	GGWCC	2 cut(s)	174, 212
XagI	CCTNNNNNAGG	2 cut(s)	972, 1298
XapI	RAATTY	3 cut(s)	181, 477, 754
XceI	RCATGY	1 cut(s)	341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1042
XmiI	GTMKAC	3 cut(s)	66, 1082, 1530
XspI	CTAG	3 cut(s)	23, 503, 1481
ZraI	GACGTC	1 cut(s)	653
Zsp2I	ATGCAT	1 cut(s)	1471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.