MD06G1183700.v1.1

Zein-binding

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
32218385 .. 32220542
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1183700.v1.1.491

Sequence Viewer

Length: 1458 bp
ATGTGCGAGGCGTGCCTGCTTTCGTTTGCAACCGAGAAAGAATCTGACTGCGATACCTACAAGTCCTTAGTTGGGATCCTGCACAAGGATCTCGAGTGCTTTGTCGAGGATGATCACCACCAAATTCAGCTGAGTGTGCAGGCGGCAAGGACGTGGGAGGAGACGACAGGGCAGGTTGAGAAGAGCAACAGCATTGTTCGGGTTTCATGTTCGTGTTGTGGTGTGCCATTGAAGATGAGCTCCTCTTCCAACTCCTATCCCAAGGGGAAAAATGGCAGCGCATTAGCGCAGGCGCCCACGCCTTCTCCACGAGCACCCTTGAGAAGCGATGATCGCAGCTTGGACTTGCCCCACATTCGATGCACTGAACTCAAACTCATGTCGGATCATGAGTCCGAGCTTCCAGAGGACGAGTATGGATCACAACTGCCGAATCGCGACTCTCAGTCAGTCAAGGAAGATCCGAAAGCAGAAGGCGAAGATTTGGCTGATGATGCAAACAGGACACCTCTTTTCGGTAAAGGAAACAGGTTTTTCGGAATCCCACTTACAGATTCGGCTACAAACAGTCCTAGGGTGGCAATGAGGATTTCGAGGAAATCGCCACTTGAAAAAACCGGCGAGTATGCCTTGGAATCTGTCGAGGAAAGCACTCCAAATGAGGCAGAGTGTGATTCCATTTTGCACCGGTTGAAGAGGCAGGTCCGGTTAGATAGGAAGTCGCTGATGGCATTGTACATGGAGCTAGACGAAGAAAGAAGCGCTTCGGCTGTGGCAGCGAACAATGCAATGGCTATGATCACCCGGCTACAAGCAGAGAAAGCTGCTGTTCAGATGGAGGCCTTGCAGTATCAGAGAATGATGGAGGAACAGGCGGAGTATGACCAAGAAGCGCTGGAAGCTACATATGATCTGCTTGCCCAAAGAGAGGAGGAGCTCAGGCTTATAGAAGCTGAAGTAGAGGCGTACAGAGAAAAATACGGATTGCTGAAGGAATTTGCTTACGAATCTGGTGATGAAGGCAAAGGGAAAAATGAAAGTGGAACTTCTGCTGGTGAGCTCAACAGCGAAAACACACAAAATGATCAACCAAGGGAGGAGAATGTAGAGGGAGCACTTGCTGAATCTTTGAAGCCTCTGAAGGGGGAGAAAACCTACCTCCTCGGTCGGATTAAGAAACTCGACAAGAGAAGCAACTTATCGGCTAATCATCTGGATGAGATAGGAAACGGAAACAAAGCTGCTCTAACAAGGCAATTATCAATGTTGTCTCATCTCAGTGAAAGGGTGAAGGTCCTTGAATCAGACACAGGATTGTTAGAGTATGCAGCTAAGACACTTGAGAAACATAGTGAAGGAACAAAACTTTTAACAGAGATAACTCAAAACTTACAGAAGCTTCGGCATCTCGTCATGATGCCACCGGAGGAAAACAAGGAACACAACGGGTTACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

486

Amino Acids

54.17

Weight (kDa)

5.0

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zein-binding PF04576 230 - 320 3e-31 Zein-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011994)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 163, 691
AccB1I GGYRCC 1 cut(s) 292
AccII CGCG 1 cut(s) 438
AciI CCGC 2 cut(s) 143, 875
AclWI GGATC 6 cut(s) 70, 83, 96, 393, 427, 455
AcsI RAATTY 2 cut(s) 123, 995
AcuI CTGAAG 3 cut(s) 975, 1010, 1160
AcyI GRCGYC 1 cut(s) 293
AfaI GTAC 2 cut(s) 737, 968
AfeI AGCGCT 2 cut(s) 763, 894
AfiI CCNNNNNNNGG 5 cut(s) 72, 85, 515, 928, 1142
AgeI ACCGGT 1 cut(s) 687
AgsI TTSAA 5 cut(s) 232, 611, 694, 1132, 1301
AhdI GACNNNNNGTC 1 cut(s) 445
AjiI CACGTC 1 cut(s) 153
Alw21I GWGCWC 5 cut(s) 242, 316, 939, 1062, 1117
Alw26I GTCTC 2 cut(s) 155, 1275
AlwI GGATC 6 cut(s) 70, 83, 96, 393, 427, 455
Ama87I CYCGRG 1 cut(s) 92
Aor51HI AGCGCT 2 cut(s) 763, 894
AoxI GGCC 1 cut(s) 840
ApeKI GCWGC 6 cut(s) 276, 336, 776, 824, 1241, 1328
ApoI RAATTY 2 cut(s) 123, 995
AsiGI ACCGGT 1 cut(s) 687
Asp700I GAANNNNTTC 1 cut(s) 763
AspA2I CCTAGG 1 cut(s) 572
AspLEI GCGC 5 cut(s) 281, 289, 295, 764, 895
AspS9I GGNCC 2 cut(s) 703, 1294
AsuC2I CCSGG 1 cut(s) 805
AsuHPI GGTGA 5 cut(s) 107, 793, 1025, 1067, 1300
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 2 cut(s) 703, 1294
AvrII CCTAGG 1 cut(s) 572
BamHI GGATCC 1 cut(s) 75
BanI GGYRCC 1 cut(s) 292
BanII GRGCYC 3 cut(s) 242, 939, 1062
BauI CACGAG 1 cut(s) 309
Bbv12I GWGCWC 5 cut(s) 242, 316, 939, 1062, 1117
BbvI GCAGC 6 cut(s) 288, 348, 788, 811, 1228, 1340
BccI CCATC 3 cut(s) 721, 829, 856
BclI TGATCA 3 cut(s) 112, 798, 1084
BcnI CCSGG 1 cut(s) 805
BcoDI GTCTC 2 cut(s) 155, 1275
BfaI CTAG 2 cut(s) 573, 746
BfoI RGCGCY 3 cut(s) 296, 765, 896
BfuAI ACCTGC 2 cut(s) 163, 691
BisI GCNGC 7 cut(s) 144, 277, 337, 777, 825, 1242, 1329
BlnI CCTAGG 1 cut(s) 572
BlsI GCNGC 7 cut(s) 145, 278, 338, 778, 826, 1243, 1330
Bme1390I CCNGG 1 cut(s) 805
Bme18I GGWCC 2 cut(s) 703, 1294
BmeRI GACNNNNNGTC 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 92
BmgBI CACGTC 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 703, 1294
BmiI GGNNCC 2 cut(s) 77, 294
BmrFI CCNGG 1 cut(s) 805
BmsI GCATC 4 cut(s) 350, 484, 1407, 1414
Bpu10I CCTNAGC 1 cut(s) 938
BpuEI CTTGAG 2 cut(s) 340, 1361
BpuMI CCSGG 1 cut(s) 805
BsaHI GRCGYC 1 cut(s) 293
BsaJI CCNNGG 5 cut(s) 261, 572, 630, 1091, 1162
BsaWI WCCGGW 3 cut(s) 687, 705, 1423
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 5 cut(s) 72, 85, 515, 928, 1142
Bse118I RCCGGY 2 cut(s) 617, 687
Bse3DI GCAATG 2 cut(s) 588, 795
BseDI CCNNGG 5 cut(s) 261, 572, 630, 1091, 1162
BseGI GGATG 2 cut(s) 115, 1222
BseLI CCNNNNNNNGG 5 cut(s) 72, 85, 515, 928, 1142
BseMI GCAATG 2 cut(s) 588, 795
BseMII CTCAG 4 cut(s) 122, 458, 952, 1291
BseRI GAGGAG 6 cut(s) 173, 232, 944, 947, 1112, 1151
BseXI GCAGC 6 cut(s) 288, 348, 788, 811, 1228, 1340
BsgI GTGCAG 2 cut(s) 65, 158
Bsh1236I CGCG 1 cut(s) 438
Bsh1285I CGRYCG 1 cut(s) 1168
BshFI GGCC 1 cut(s) 842
BshNI GGYRCC 1 cut(s) 292
BshTI ACCGGT 1 cut(s) 687
BsiEI CGRYCG 1 cut(s) 1168
BsiHKAI GWGCWC 5 cut(s) 242, 316, 939, 1062, 1117
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 5 cut(s) 618, 688, 706, 805, 1424
BslI CCNNNNNNNGG 5 cut(s) 72, 85, 515, 928, 1142
BsmAI GTCTC 2 cut(s) 155, 1275
BsmBI CGTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 842
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 5 cut(s) 242, 316, 939, 1062, 1117
Bsp1407I TGTACA 1 cut(s) 735
Bsp68I TCGCGA 1 cut(s) 438
BspACI CCGC 2 cut(s) 143, 875
BspANI GGCC 1 cut(s) 842
BspCNI CTCAG 4 cut(s) 123, 457, 951, 1290
BspFNI CGCG 1 cut(s) 438
BspHI TCATGA 2 cut(s) 388, 1413
BspLI GGNNCC 2 cut(s) 77, 294
BspMI ACCTGC 2 cut(s) 163, 691
BspPI GGATC 6 cut(s) 70, 83, 96, 393, 427, 455
BspQI GCTCTTC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 292
BsrDI GCAATG 2 cut(s) 588, 795
BsrFI RCCGGY 2 cut(s) 617, 687
BsrGI TGTACA 1 cut(s) 735
BssAI RCCGGY 2 cut(s) 617, 687
BssECI CCNNGG 5 cut(s) 261, 572, 630, 1091, 1162
BssNI GRCGYC 1 cut(s) 293
BssSI CACGAG 1 cut(s) 309
BssT1I CCWWGG 4 cut(s) 261, 572, 630, 1091
Bst2BI CACGAG 1 cut(s) 309
Bst4CI ACNGT 2 cut(s) 569, 1455
Bst6I CTCTTC 3 cut(s) 176, 250, 689
BstACI GRCGYC 1 cut(s) 293
BstAUI TGTACA 1 cut(s) 735
BstC8I GCNNGC 5 cut(s) 13, 17, 141, 291, 918
BstDEI CTNAG 6 cut(s) 67, 131, 444, 938, 1277, 1332
BstEII GGTNACC 1 cut(s) 1449
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 2 cut(s) 115, 1222
BstFNI CGCG 1 cut(s) 438
BstH2I RGCGCY 3 cut(s) 296, 765, 896
BstHHI GCGC 5 cut(s) 281, 289, 295, 764, 895
BstMAI GTCTC 2 cut(s) 155, 1275
BstMCI CGRYCG 1 cut(s) 1168
BstMWI GCNNNNNNNGC 8 cut(s) 12, 136, 333, 494, 776, 785, 821, 899
BstPI GGTNACC 1 cut(s) 1449
BstSCI CCNGG 1 cut(s) 803
BstUI CGCG 1 cut(s) 438
BstV1I GCAGC 6 cut(s) 288, 348, 788, 811, 1228, 1340
BstX2I RGATCY 3 cut(s) 75, 88, 460
BstYI RGATCY 3 cut(s) 75, 88, 460
BsuRI GGCC 1 cut(s) 842
BtgZI GCGATG 1 cut(s) 342
BtrI CACGTC 1 cut(s) 153
BtsCI GGATG 2 cut(s) 115, 1222
BtsIMutI CAGTG 2 cut(s) 363, 1285
BtuMI TCGCGA 1 cut(s) 438
BveI ACCTGC 2 cut(s) 163, 691
Cac8I GCNNGC 5 cut(s) 13, 17, 141, 291, 918
CciI TCATGA 2 cut(s) 388, 1413
CfoI GCGC 5 cut(s) 281, 289, 295, 764, 895
Cfr10I RCCGGY 2 cut(s) 617, 687
Cfr13I GGNCC 2 cut(s) 703, 1294
Csp6I GTAC 2 cut(s) 736, 967
CspAI ACCGGT 1 cut(s) 687
CviAII CATG 5 cut(s) 207, 379, 389, 739, 1414
CviQI GTAC 2 cut(s) 736, 967
DdeI CTNAG 6 cut(s) 67, 131, 444, 938, 1277, 1332
DinI GGCGCC 1 cut(s) 294
DriI GACNNNNNGTC 1 cut(s) 445
Eam1104I CTCTTC 3 cut(s) 176, 250, 689
Eam1105I GACNNNNNGTC 1 cut(s) 445
EarI CTCTTC 3 cut(s) 176, 250, 689
EciI GGCGGA 1 cut(s) 890
Ecl136II GAGCTC 3 cut(s) 240, 937, 1060
Eco130I CCWWGG 4 cut(s) 261, 572, 630, 1091
Eco147I AGGCCT 1 cut(s) 842
Eco24I GRGCYC 3 cut(s) 242, 939, 1062
Eco47I GGWCC 2 cut(s) 703, 1294
Eco47III AGCGCT 2 cut(s) 763, 894
Eco53kI GAGCTC 3 cut(s) 240, 937, 1060
Eco57I CTGAAG 3 cut(s) 975, 1010, 1160
Eco88I CYCGRG 1 cut(s) 92
Eco91I GGTNACC 1 cut(s) 1449
EcoICRI GAGCTC 3 cut(s) 240, 937, 1060
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 1294
EcoO65I GGTNACC 1 cut(s) 1449
EcoT14I CCWWGG 4 cut(s) 261, 572, 630, 1091
EcoT38I GRGCYC 3 cut(s) 242, 939, 1062
EgeI GGCGCC 1 cut(s) 294
EheI GGCGCC 1 cut(s) 294
ErhI CCWWGG 4 cut(s) 261, 572, 630, 1091
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 5 cut(s) 210, 382, 392, 742, 1417
FalI AAGNNNNNCTT 4 cut(s) 748, 780, 1030, 1062
FatI CATG 5 cut(s) 206, 378, 388, 738, 1413
FauNDI CATATG 1 cut(s) 907
FbaI TGATCA 3 cut(s) 112, 798, 1084
Fnu4HI GCNGC 7 cut(s) 144, 277, 337, 777, 825, 1242, 1329
FokI GGATG 2 cut(s) 122, 1229
FriOI GRGCYC 3 cut(s) 242, 939, 1062
Fsp4HI GCNGC 7 cut(s) 144, 277, 337, 777, 825, 1242, 1329
FspBI CTAG 2 cut(s) 573, 746
GlaI GCGC 5 cut(s) 280, 288, 294, 763, 894
GluI GCNGC 7 cut(s) 144, 277, 337, 777, 825, 1242, 1329
HaeII RGCGCY 3 cut(s) 296, 765, 896
HaeIII GGCC 1 cut(s) 842
HapII CCGG 5 cut(s) 618, 688, 706, 805, 1424
HhaI GCGC 5 cut(s) 281, 289, 295, 764, 895
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 5 cut(s) 210, 382, 392, 742, 1417
Hin6I GCGC 5 cut(s) 279, 287, 293, 762, 893
HinP1I GCGC 5 cut(s) 279, 287, 293, 762, 893
HindIII AAGCTT 1 cut(s) 1397
HpaII CCGG 5 cut(s) 618, 688, 706, 805, 1424
HphI GGTGA 5 cut(s) 107, 793, 1025, 1067, 1300
Hpy188III TCNNGA 6 cut(s) 92, 389, 404, 437, 1214, 1414
HpyAV CCTTC 7 cut(s) 312, 467, 985, 1013, 1135, 1285, 1349
HpyCH4III ACNGT 2 cut(s) 569, 1455
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 9 cut(s) 29, 82, 139, 363, 497, 685, 788, 847, 1328
HpyF10VI GCNNNNNNNGC 8 cut(s) 12, 136, 333, 494, 776, 785, 821, 899
HpyF3I CTNAG 6 cut(s) 67, 131, 444, 938, 1277, 1332
HpySE526I ACGT 1 cut(s) 152
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 5 cut(s) 210, 382, 392, 742, 1417
HspAI GCGC 5 cut(s) 279, 287, 293, 762, 893
KasI GGCGCC 1 cut(s) 292
Ksp22I TGATCA 3 cut(s) 112, 798, 1084
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 4 cut(s) 245, 742, 934, 1112
Lsp1109I GCAGC 6 cut(s) 288, 348, 788, 811, 1228, 1340
LweI GCATC 4 cut(s) 350, 484, 1407, 1414
MaeI CTAG 2 cut(s) 573, 746
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 1449
MboII GAAGA 7 cut(s) 193, 237, 244, 470, 491, 706, 764
MflI RGATCY 3 cut(s) 75, 88, 460
MhlI GDGCHC 5 cut(s) 242, 316, 939, 1062, 1117
MluCI AATT 3 cut(s) 123, 995, 1256
Mly113I GGCGCC 1 cut(s) 293
MlyI GAGTC 2 cut(s) 401, 434
MmeI TCCRAC 3 cut(s) 273, 363, 1148
MroXI GAANNNNTTC 1 cut(s) 763
MseI TTAA 2 cut(s) 1173, 1370
MslI CAYNNNNRTG 3 cut(s) 211, 1215, 1278
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 5 cut(s) 618, 688, 706, 805, 1424
MspR9I CCNGG 1 cut(s) 805
MvnI CGCG 1 cut(s) 438
MwoI GCNNNNNNNGC 8 cut(s) 12, 136, 333, 494, 776, 785, 821, 899
NarI GGCGCC 1 cut(s) 293
NciI CCSGG 1 cut(s) 805
NdeI CATATG 1 cut(s) 907
NlaIII CATG 5 cut(s) 210, 382, 392, 742, 1417
NlaIV GGNNCC 2 cut(s) 77, 294
NruI TCGCGA 1 cut(s) 438
PaeR7I CTCGAG 1 cut(s) 92
PagI TCATGA 2 cut(s) 388, 1413
PceI AGGCCT 1 cut(s) 842
PciSI GCTCTTC 1 cut(s) 176
PdmI GAANNNNTTC 1 cut(s) 763
PfeI GAWTC 9 cut(s) 41, 433, 540, 554, 635, 674, 1007, 1124, 1301
PinAI ACCGGT 1 cut(s) 687
PkrI GCNGC 7 cut(s) 145, 278, 338, 778, 826, 1243, 1330
PleI GAGTC 2 cut(s) 400, 434
PluTI GGCGCC 1 cut(s) 296
PpsI GAGTC 2 cut(s) 400, 434
PpuMI RGGWCCY 1 cut(s) 1294
Psp124BI GAGCTC 3 cut(s) 242, 939, 1062
Psp5II RGGWCCY 1 cut(s) 1294
PspEI GGTNACC 1 cut(s) 1449
PspN4I GGNNCC 2 cut(s) 77, 294
PspPI GGNCC 2 cut(s) 703, 1294
PspPPI RGGWCCY 1 cut(s) 1294
PsuI RGATCY 3 cut(s) 75, 88, 460
PvuII CAGCTG 1 cut(s) 130
RruI TCGCGA 1 cut(s) 438
RsaI GTAC 2 cut(s) 737, 968
RsaNI GTAC 2 cut(s) 736, 967
RseI CAYNNNNRTG 3 cut(s) 211, 1215, 1278
SacI GAGCTC 3 cut(s) 242, 939, 1062
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 1173, 1370
SatI GCNGC 7 cut(s) 144, 277, 337, 777, 825, 1242, 1329
Sau96I GGNCC 2 cut(s) 703, 1294
SchI GAGTC 2 cut(s) 401, 434
ScrFI CCNGG 1 cut(s) 805
SduI GDGCHC 5 cut(s) 242, 316, 939, 1062, 1117
SfaNI GCATC 4 cut(s) 350, 484, 1407, 1414
SfoI GGCGCC 1 cut(s) 294
Sfr274I CTCGAG 1 cut(s) 92
SinI GGWCC 2 cut(s) 703, 1294
SlaI CTCGAG 1 cut(s) 92
SmiMI CAYNNNNRTG 3 cut(s) 211, 1215, 1278
SmlI CTYRAG 3 cut(s) 92, 319, 1340
SmoI CTYRAG 3 cut(s) 92, 319, 1340
Sse9I AATT 3 cut(s) 123, 995, 1256
SseBI AGGCCT 1 cut(s) 842
SsiI CCGC 2 cut(s) 143, 875
SspDI GGCGCC 1 cut(s) 292
SspMI CTAG 2 cut(s) 573, 746
SstI GAGCTC 3 cut(s) 242, 939, 1062
StuI AGGCCT 1 cut(s) 842
StyD4I CCNGG 1 cut(s) 803
StyI CCWWGG 4 cut(s) 261, 572, 630, 1091
TaaI ACNGT 2 cut(s) 569, 1455
TaiI ACGT 1 cut(s) 155
TaqI TCGA 6 cut(s) 93, 105, 358, 593, 642, 1182
TaqII GACCGA 1 cut(s) 1154
TasI AATT 3 cut(s) 123, 995, 1256
TatI WGTACW 1 cut(s) 735
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 9 cut(s) 41, 433, 540, 554, 635, 674, 1007, 1124, 1301
Tru1I TTAA 2 cut(s) 1173, 1370
Tru9I TTAA 2 cut(s) 1173, 1370
TscAI CASTG 2 cut(s) 370, 1285
TseI GCWGC 6 cut(s) 276, 336, 776, 824, 1241, 1328
TspDTI ATGAA 3 cut(s) 195, 1032, 1050
TspGWI ACGGA 2 cut(s) 996, 1245
TspRI CASTG 2 cut(s) 370, 1285
VpaK11BI GGWCC 2 cut(s) 703, 1294
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 2 cut(s) 123, 995
XhoI CTCGAG 1 cut(s) 92
XmaJI CCTAGG 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 763
XspI CTAG 2 cut(s) 573, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.