Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002219.1

Orthogroup ID

OG0011994

Physical Location & Seq

Genomic Coordinates Forward (+)

88708 .. 89214

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002219.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgggagagctctcacgcttcatggtctatgctgtgcttgaatgggccttgatcattctgctcttcattgatggcctttttgcttttgttgccaatgaattcgccaagctatttgagctcagatacccctgctggctttgctccaggatcgatcacattctcgttaacagaggtcgtgatttctattataatgattccatatgtgaatcacacaagaaagatgtctcataccttgcttactgccacaaccacaagaggctatccgacataagaaagatgtgtgaggcatgtcttctttcatttgcaaccgaaaaagagtctgatttcgacacatacaagtccctagttgggatcttgcacaaggatctcgagtgctttgtggaggatgatgaacatcaaattcagttgagtgtgcctgcagcaaggacatgggaggattggtattgcttaaggcttaaaaagcgtacgctgaaggcacagaaggtaaggcaaaggcgtacgccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

168

Amino Acids

20.01

Weight (kDa)

7.58

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18990 AT1G74830
fragaria_vesca	FvH4_5g16010
malus_domestica	MD06G1183700.v1.1 MD14G1189800.v1.1
prunus_persica	Prupe.5G182400_v2.0.a1
pyrus_communis	pycom14g15730 pycom14g15740
rosa_chinensis	RchiOBHm_Chr7g0180061
rosa_laevigata	RLG00000005298
rosa_multiflora	Rmu_sc0002219.1_g000024 Rmu_ssc0000119.1_g000026
rosa_roxburghii	Rroxscaffold_3G00273160
rosa_rugosa	Rorug06G0430200
rosa_samantha	Rh7AG030500 Rh7BG030400 Rh7CG032200 Rh7DG031200
rosa_wichuraiana	Rw7G002540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AclWI	GGATC	3 cut(s)	155, 359, 372
AcsI	RAATTY	2 cut(s)	98, 399
AcuI	CTGAAG	1 cut(s)	491
AfaI	GTAC	2 cut(s)	466, 499
AfiI	CCNNNNNNNGG	1 cut(s)	348
AflII	CTTAAG	1 cut(s)	448
AgsI	TTSAA	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	3 cut(s)	10, 109, 118
AluI	AGCT	3 cut(s)	10, 109, 118
Alw21I	GWGCWC	2 cut(s)	12, 120
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	3 cut(s)	155, 359, 372
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	2 cut(s)	45, 73
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	2 cut(s)	98, 399
AspS9I	GGNCC	1 cut(s)	45
AvaI	CYCGRG	1 cut(s)	368
BanII	GRGCYC	2 cut(s)	12, 120
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	2 cut(s)	12, 120
BbvI	GCAGC	1 cut(s)	431
BccI	CCATC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	145
BclI	TGATCA	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	417
BfrI	CTTAAG	1 cut(s)	448
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
Bme1390I	CCNGG	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	150
BseGI	GGATG	1 cut(s)	391
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	431
BshFI	GGCC	2 cut(s)	47, 75
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	2 cut(s)	12, 120
BsiHKCI	CYCGRG	1 cut(s)	368
BsiWI	CGTACG	2 cut(s)	464, 497
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	2 cut(s)	47, 75
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	2 cut(s)	12, 120
Bsp143I	GATC	5 cut(s)	51, 147, 151, 351, 364
BspANI	GGCC	2 cut(s)	47, 75
BspCNI	CTCAG	1 cut(s)	132
BspDI	ATCGAT	1 cut(s)	150
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	3 cut(s)	155, 359, 372
BspQI	GCTCTTC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	448
BssMI	GATC	5 cut(s)	51, 147, 151, 351, 364
Bst2UI	CCWGG	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	448
BstC8I	GCNNGC	2 cut(s)	134, 417
BstDEI	CTNAG	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	5 cut(s)	54, 150, 154, 354, 367
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	5 cut(s)	51, 147, 151, 351, 364
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 115, 138, 460
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	431
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	2 cut(s)	351, 364
BstYI	RGATCY	2 cut(s)	351, 364
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	47, 75
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	134, 417
Cfr13I	GGNCC	1 cut(s)	45
ClaI	ATCGAT	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	465, 498
CviAII	CATG	3 cut(s)	22, 288, 429
CviJI	RGCY	8 cut(s)	10, 47, 75, 109, 118, 136, 259, 454
CviKI_1	RGCY	8 cut(s)	10, 47, 75, 109, 118, 136, 259, 454
CviQI	GTAC	2 cut(s)	465, 498
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	5 cut(s)	53, 149, 153, 353, 366
DpnII	GATC	5 cut(s)	51, 147, 151, 351, 364
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	2 cut(s)	10, 118
Eco24I	GRGCYC	2 cut(s)	12, 120
Eco53kI	GAGCTC	2 cut(s)	10, 118
Eco57I	CTGAAG	1 cut(s)	491
Eco88I	CYCGRG	1 cut(s)	368
EcoICRI	GAGCTC	2 cut(s)	10, 118
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	143
EcoT38I	GRGCYC	2 cut(s)	12, 120
FaeI	CATG	3 cut(s)	25, 291, 432
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	3 cut(s)	21, 287, 428
FauNDI	CATATG	1 cut(s)	200
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	1 cut(s)	398
FriOI	GRGCYC	2 cut(s)	12, 120
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	1 cut(s)	420
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	47, 75
Hin1II	CATG	3 cut(s)	25, 291, 432
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	194, 206, 317
HpaI	GTTAAC	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	122, 265, 322
Hpy188III	TCNNGA	2 cut(s)	176, 368
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	466, 475
HpyCH4V	TGCA	3 cut(s)	305, 358, 419
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 115, 138, 460
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	3 cut(s)	25, 291, 432
Ksp22I	TGATCA	1 cut(s)	51
KspAI	GTTAAC	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	51, 147, 151, 351, 364
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	5 cut(s)	118, 130, 142, 157, 429
Lsp1109I	GCAGC	1 cut(s)	431
MaeI	CTAG	1 cut(s)	344
MalI	GATC	5 cut(s)	53, 149, 153, 353, 366
MboI	GATC	5 cut(s)	51, 147, 151, 351, 364
MboII	GAAGA	2 cut(s)	55, 284
MflI	RGATCY	2 cut(s)	351, 364
MhlI	GDGCHC	2 cut(s)	12, 120
MluCI	AATT	2 cut(s)	98, 399
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	5 cut(s)	164, 249, 277, 376, 427
MseI	TTAA	4 cut(s)	165, 449, 456, 505
MspCI	CTTAAG	1 cut(s)	448
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	4 cut(s)	89, 115, 138, 460
NdeI	CATATG	1 cut(s)	200
NdeII	GATC	5 cut(s)	51, 147, 151, 351, 364
NlaIII	CATG	3 cut(s)	25, 291, 432
NspI	RCATGY	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	368
PciSI	GCTCTTC	1 cut(s)	68
PfeI	GAWTC	2 cut(s)	194, 206
Pfl23II	CGTACG	2 cut(s)	464, 497
PfoI	TCCNGGA	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PsiI	TTATAA	1 cut(s)	189
Psp124BI	GAGCTC	2 cut(s)	12, 120
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspLI	CGTACG	2 cut(s)	464, 497
PspPI	GGNCC	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	351, 364
RsaI	GTAC	2 cut(s)	466, 499
RsaNI	GTAC	2 cut(s)	465, 498
SacI	GAGCTC	2 cut(s)	12, 120
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	4 cut(s)	165, 449, 456, 505
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	5 cut(s)	51, 147, 151, 351, 364
Sau96I	GGNCC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	2 cut(s)	12, 120
SetI	ASST	6 cut(s)	12, 111, 120, 175, 234, 486
SfcI	CTRYAG	1 cut(s)	417
Sfr274I	CTCGAG	1 cut(s)	368
SlaI	CTCGAG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	368, 448
SmoI	CTYRAG	2 cut(s)	368, 448
Sse9I	AATT	2 cut(s)	98, 399
SspMI	CTAG	1 cut(s)	344
SstI	GAGCTC	2 cut(s)	12, 120
StyD4I	CCNGG	1 cut(s)	143
TaqI	TCGA	3 cut(s)	150, 327, 369
TasI	AATT	2 cut(s)	98, 399
TfiI	GAWTC	2 cut(s)	194, 206
Tru1I	TTAA	4 cut(s)	165, 449, 456, 505
Tru9I	TTAA	4 cut(s)	165, 449, 456, 505
TseI	GCWGC	1 cut(s)	419
TspDTI	ATGAA	5 cut(s)	10, 55, 111, 288, 405
Vha464I	CTTAAG	1 cut(s)	448
XapI	RAATTY	2 cut(s)	98, 399
XceI	RCATGY	1 cut(s)	291
XhoI	CTCGAG	1 cut(s)	368
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.