Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012277

Physical Location & Seq

Genomic Coordinates Reverse (-)

32799601 .. 32802641

Gene Structure 3041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1192600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2787 bp

ATGTGGCCACCGAGTGTTAGGTTATTACATGTTCATACGTTCCCGCGTTTATTCAAAATGATCTGTGACAAAATCATTATGCTCTCCTTTTCCGCTTCACGAACCCAAATGAATTCTCTCCTCAATCCAAAAATCCCCTCCAGAATCTCACTCTTTCAACTCAAGTTTCTATCTTCGCTTGCCGTTGCGGAAAACCCATCTTTTTTCCCCATCGAAAACGACCAAATTCCCAGTCGATTTGACCCTTTTCAGTTCTTCAATGATTATGCAAAATCAAGACAGTGTACCGTTAGAATCACTAAAATCGTACACACCCATTTGACCACAACCGGTTTGCTTCAATCCGATATCTTCCTCTCAAATTCATTGCTTGATTTGTATTGTAAGTCCGCTGCCATGGTAGATGCACTCAAGCTGTTTGATTTAATTGCTGACCGAAATTTTTTTTCGTGGAATATCATGATTTCGGGTTATAACCACATTTCGTTATTCAAGATGGGATGGGAAATGTTTTGTAGGATGCACACTTCGAGTTTTGGGCCCGATGAGTTTGCCTATGGGAGTGTTCTTTCGGCTTGCACTGCCTTGCAAGCTCCTATTTTTGGGAAGCAGGTTTATTCGCTTGCAATTAAAAATGGGTTCTTTCCGAATGGTTATGTTCAGTCCGGAATGATAGACTTGTTTGCGAAAAATTGCAGCTTTGAAGATGCTTTGAGGGTTTTTCATGATGTTTCATGTCAGAATGTTGTGAGTTGGAATGCTATTATCTCTGGGGCTGTGAGAAATGGAGAGAATAGGGTTGCTTTGCATCTTTTTCGGAAAATGTTCCGTGGATTCCTGTTGCCAAATAGTTTTACATTTTCTAGTGTTTTAACCGCTTGTGCTGCGCTTGAAGAAATTGAAGTCGGGAAGGAAGTGCAAGGGTTGGTGATTAAACACGGTGCAGAAGATGTCTTTGTTGGGACTACTATTGTAGATTTATATGCCAAATGTGGAGAAATGAATGAAGCTGTCAAGGAATTCAAACATATGCCAACCCATAATGTGGTTTCTTGGACTGCCATCATTTCCGGTTTTGTGCACAAGGACGATTATATTTCTGCCCTCAAATTTTTCGGAGAAATGAGAAAAGTCGGAGAGCAAATGAATAAGTACACTGTTACGAGTGTACTTACTGCATGTACTAGACCATCCATGACTGAAGAGGCAACCCAAATTCACTCTTTGATTTTGAAATCTGGATTCTTGTCAGCTGCCGTTGTGGGGTCAGCGTTAATTAATGCATATTCAAAAATAGGAGCAGTCGATCTATCCGAGATGGTGTTCAGAGAGATGGAAAATATAAAGGATCTCAGGACATGGGCAGCAATAATATCTTCTTTTGCTCAGAATCAAAATTCTGGAAGGGCAATTGAATTGTTCCTGAGAATGTTACAGGAAAGTGTGAGACCAGATAAGTTTTGTACTTCCAGTGTCTTGAGCATTGTAGACTGTTTAAATCTAGGGAGACAGATCCACAGCTACACTCTTAAAAGTGGGTTGGTATTTGATGTTTCTGTTGGTAGTTCTCTTTTCACAATGTACTCGAAGTGTGATAGTCTAGAGGAATCTTACAAAGTTTTTCAGCAAATTCCTGACAAAGACAATGTTTCATGGGCCTCAATGATTGCTGGTTTTGTGGAACATGGCTGTGCAAATCAAGCCCTTCAGCTATATAGAGAGATACCATTAGAAGAAATTGTACCCGACCAGATGACTTTAACTGCAATTCTAACCGCATGTTCTGCCTTGCGTTCCCTACGGACTGGTAAGGAAATTCATTGTCACGCTCTTCGCAGGGGAGTTGAACAAGATGTACTTGGTGGGGCAATTGTGACCATGTACTCAAAATGTAGTGCTCTATCATTGGCGAGGAGGGTGTTTGATATGCTTCCACAAAAGGATGAGGTTGCATGCTCCTCCTTGGTTTCAGGGTATGCCCAAAATGGGTATGTCGAAGAGGCGCTTCAGCTATTTCATGAAATGCTGATGGCAGATTTGACTATTGACTCCTTCACAATTTCCTCCATTCTAGGGGCCATTGCACTTTTGAATGGATTAAGTATTGGGACTCAACTGCATGCCCACATCACGAAAGTTGGCTTCAATTCACATGTTTCTGTCGGCAGTTCACTAGTGACAATGTACTCAAAATGTGCAAGCATTGAAGATTGCCTCAAAGCATTTGATCAAATTGAGAAGCCAGATCTAGTTTGTTGGACAGCTATGATTGTGAGCTATGCTCAACACGGGAAAGGCGCAGAGGCTTTACAAGCATACGAGCTTTTGAGGGAACAAGGAATCAGGCCTGATTCAGTGACTTTTGTTGCACTTTTATCTGCCTGTAGTCATAACGGATTGGTTGAAGAAGCTTATTTCTACTTTAGTTCAATGGTTCAAGACTATGGCCTAAAGCCTGGTGATCGTCACTATGCCTGTATGGTTGATCTTCTTAGTCGATCAGGCAGACTGAAGGAGGCTGCAACATTCATTAACAATATGCCTATTAAACCCGATGCTTTAATATGGGGAACACTGCACGCTGCTTGTAAAGTTCATGGCGATATGGAGCTTGGAAAGCTAGTAGCTAATAAGATGATGGAGTTGGAGCCATCAATGGATCCTGGGGCATATGTTTCCATTTCAAACATGTATGCAGATGTGGGCCAGTGGGAAGAAGTCATCAAGATTAGAAACCAGATAAAGGGAACTGATATGAGAAAGGAACCTGGTTGGAGCTTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

929

Amino Acids

103.31

Weight (kDa)

6.31

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	248 - 295	1.8e-10	PPR repeat family
PPR_2	PF13041	348 - 395	9.7e-10	PPR repeat family
PPR_2	PF13041	648 - 693	8.9e-08	PPR repeat family
PPR	PF01535	650 - 677	7e-07	PPR repeat
PPR_2	PF13041	748 - 796	2.9e-09	PPR repeat family
E_motif	PF20431	866 - 928	5.3e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74600
fragaria_vesca	FvH4_5g15030
malus_domestica	MD06G1192600.v1.1 MD14G1199400.v1.1
prunus_persica	Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1
pyrus_communis	pycom06g17070 pycom14g16530
rosa_chinensis	RchiOBHm_Chr7g0181221
rosa_laevigata	RLG00000005205
rosa_multiflora	Rmu_sc0001147.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272190
rosa_rugosa	Rorug06G0439600
rosa_samantha	Rh7AG041400 Rh7BG040700 Rh7CG042900 Rh7DG041200
rosa_wichuraiana	Rw7G003410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
Acc36I	ACCTGC	1 cut(s)	601
AccB7I	CCANNNNNTGG	1 cut(s)	1045
AccI	GTMKAC	1 cut(s)	1488
AccII	CGCG	1 cut(s)	46
AccIII	TCCGGA	1 cut(s)	665
AciI	CCGC	6 cut(s)	44, 93, 188, 390, 876, 1776
AclWI	GGATC	4 cut(s)	1356, 1507, 2654, 2667
AcoI	YGGCCR	1 cut(s)	5
AcuI	CTGAAG	4 cut(s)	1221, 1691, 1991, 2531
AdeI	CACNNNGTG	1 cut(s)	14
AfiI	CCNNNNNNNGG	6 cut(s)	602, 1045, 1263, 1986, 2073, 2743
AflIII	ACRYGT	3 cut(s)	28, 2152, 2688
AgeI	ACCGGT	1 cut(s)	329
AhlI	ACTAGT	1 cut(s)	2173
AjnI	CCWGG	3 cut(s)	2455, 2662, 2767
Alw21I	GWGCWC	2 cut(s)	1083, 1900
Alw26I	GTCTC	2 cut(s)	1441, 1501
Alw44I	GTGCAC	1 cut(s)	1079
AlwI	GGATC	4 cut(s)	1356, 1507, 2654, 2667
Aor13HI	TCCGGA	1 cut(s)	665
AoxI	GGCC	7 cut(s)	5, 539, 1656, 2076, 2345, 2446, 2704
ApaI	GGGCCC	1 cut(s)	543
ApaLI	GTGCAC	1 cut(s)	1079
ApeKI	GCWGC	7 cut(s)	392, 696, 884, 1253, 1364, 2519, 2582
ArsI	GACNNNNNNTTYG	2 cut(s)	217, 249
AseI	ATTAAT	1 cut(s)	1278
AsiGI	ACCGGT	1 cut(s)	329
Asp700I	GAANNNNTTC	1 cut(s)	824
AspLEI	GCGC	3 cut(s)	889, 2005, 2300
AspS9I	GGNCC	5 cut(s)	539, 540, 1656, 2076, 2704
AsuHPI	GGTGA	2 cut(s)	940, 2471
BaeGI	GKGCMC	2 cut(s)	543, 1083
BalI	TGGCCA	1 cut(s)	7
BamHI	GGATCC	1 cut(s)	2659
BanII	GRGCYC	1 cut(s)	543
BarI	GAAGNNNNNNTAC	2 cut(s)	1725, 1757
Bbv12I	GWGCWC	2 cut(s)	1083, 1900
BbvI	GCAGC	7 cut(s)	379, 708, 871, 1240, 1376, 2506, 2569
BceAI	ACGGC	2 cut(s)	167, 1241
BcgI	CGANNNNNNTGC	4 cut(s)	533, 567, 797, 831
BciT130I	CCWGG	3 cut(s)	2457, 2664, 2769
BclI	TGATCA	1 cut(s)	2227
BcoDI	GTCTC	2 cut(s)	1441, 1501
BcuI	ACTAGT	1 cut(s)	2173
BfaI	CTAG	8 cut(s)	864, 1185, 1502, 1601, 2072, 2174, 2249, 2621
BfmI	CTRYAG	1 cut(s)	2383
BfoI	RGCGCY	1 cut(s)	2006
BfuAI	ACCTGC	1 cut(s)	601
BglII	AGATCT	1 cut(s)	2245
BisI	GCNGC	7 cut(s)	393, 697, 885, 1254, 1365, 2520, 2583
BlsI	GCNGC	7 cut(s)	394, 698, 886, 1255, 1366, 2521, 2584
Bme1390I	CCNGG	3 cut(s)	2457, 2664, 2769
BmgT120I	GGNCC	5 cut(s)	539, 540, 1656, 2076, 2704
BmiI	GGNNCC	5 cut(s)	541, 2077, 2649, 2661, 2766
BmrFI	CCNGG	3 cut(s)	2457, 2664, 2769
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	5 cut(s)	394, 510, 697, 817, 2545
BmuI	ACTGGG	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	2266, 2298
BpmI	CTGGAG	1 cut(s)	124
BpuEI	CTTGAG	3 cut(s)	146, 395, 1498
BsaI	GGTCTC	1 cut(s)	1441
BsaJI	CCNNGG	4 cut(s)	396, 829, 1962, 2663
BsaWI	WCCGGW	3 cut(s)	329, 665, 1070
Bsc4I	CCNNNNNNNGG	6 cut(s)	602, 1045, 1263, 1986, 2073, 2743
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	4 cut(s)	231, 1470, 1810, 2707
Bse3DI	GCAATG	2 cut(s)	365, 2079
BseAI	TCCGGA	1 cut(s)	665
BseBI	CCWGG	3 cut(s)	2457, 2664, 2769
BseDI	CCNNGG	4 cut(s)	396, 829, 1962, 2663
BseGI	GGATG	4 cut(s)	506, 525, 1190, 1948
BseLI	CCNNNNNNNGG	6 cut(s)	602, 1045, 1263, 1986, 2073, 2743
BseMI	GCAATG	2 cut(s)	365, 2079
BseMII	CTCAG	3 cut(s)	1366, 1400, 1415
BseNI	ACTGG	4 cut(s)	231, 1470, 1810, 2707
BseRI	GAGGAG	3 cut(s)	110, 1927, 1948
BseSI	GKGCMC	2 cut(s)	543, 1083
BseXI	GCAGC	7 cut(s)	379, 708, 871, 1240, 1376, 2506, 2569
BsgI	GTGCAG	2 cut(s)	963, 2561
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	7 cut(s)	7, 541, 1658, 2078, 2347, 2448, 2706
BshTI	ACCGGT	1 cut(s)	329
BsiHKAI	GWGCWC	2 cut(s)	1083, 1900
BsiSI	CCGG	3 cut(s)	330, 666, 1071
BslFI	GGGAC	2 cut(s)	976, 2122
BslI	CCNNNNNNNGG	6 cut(s)	602, 1045, 1263, 1986, 2073, 2743
BsmAI	GTCTC	2 cut(s)	1441, 1501
BsmFI	GGGAC	2 cut(s)	976, 2122
BsmI	GAATGC	1 cut(s)	763
BsnI	GGCC	7 cut(s)	7, 541, 1658, 2078, 2347, 2448, 2706
Bso31I	GGTCTC	1 cut(s)	1441
Bsp120I	GGGCCC	1 cut(s)	539
Bsp1286I	GDGCHC	3 cut(s)	543, 1083, 1900
Bsp13I	TCCGGA	1 cut(s)	665
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	6 cut(s)	44, 93, 188, 390, 876, 1776
BspANI	GGCC	7 cut(s)	7, 541, 1658, 2078, 2347, 2448, 2706
BspCNI	CTCAG	3 cut(s)	1365, 1399, 1416
BspEI	TCCGGA	1 cut(s)	665
BspFNI	CGCG	1 cut(s)	46
BspHI	TCATGA	3 cut(s)	459, 724, 2017
BspLI	GGNNCC	5 cut(s)	541, 2077, 2649, 2661, 2766
BspMI	ACCTGC	1 cut(s)	601
BspPI	GGATC	4 cut(s)	1356, 1507, 2654, 2667
BspQI	GCTCTTC	1 cut(s)	1836
BspTNI	GGTCTC	1 cut(s)	1441
BsrDI	GCAATG	2 cut(s)	365, 2079
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	4 cut(s)	231, 1470, 1810, 2707
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	4 cut(s)	396, 829, 1962, 2663
BssT1I	CCWWGG	2 cut(s)	396, 1962
Bst2UI	CCWGG	3 cut(s)	2457, 2664, 2769
Bst4CI	ACNGT	5 cut(s)	282, 289, 941, 1159, 1493
Bst6I	CTCTTC	3 cut(s)	1197, 1836, 1992
BstAPI	GCANNNNNTGC	1 cut(s)	1784
BstC8I	GCNNGC	8 cut(s)	180, 577, 591, 624, 1954, 2121, 2200, 2580
BstDEI	CTNAG	4 cut(s)	1352, 1386, 1424, 2492
BstDSI	CCRYGG	2 cut(s)	396, 829
BstF5I	GGATG	4 cut(s)	506, 525, 1190, 1948
BstFNI	CGCG	1 cut(s)	46
BstH2I	RGCGCY	1 cut(s)	2006
BstHHI	GCGC	3 cut(s)	889, 2005, 2300
BstMAI	GTCTC	2 cut(s)	1441, 1501
BstMWI	GCNNNNNNNGC	7 cut(s)	581, 590, 884, 1700, 1784, 2312, 2617
BstNI	CCWGG	3 cut(s)	2457, 2664, 2769
BstNSI	RCATGY	7 cut(s)	32, 1182, 1782, 1956, 2123, 2156, 2692
BstSCI	CCNGG	3 cut(s)	2455, 2662, 2767
BstSFI	CTRYAG	1 cut(s)	2383
BstSLI	GKGCMC	2 cut(s)	543, 1083
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	7 cut(s)	379, 708, 871, 1240, 1376, 2506, 2569
BstX2I	RGATCY	4 cut(s)	1348, 1512, 2245, 2659
BstYI	RGATCY	4 cut(s)	1348, 1512, 2245, 2659
BsuRI	GGCC	7 cut(s)	7, 541, 1658, 2078, 2347, 2448, 2706
BtgI	CCRYGG	2 cut(s)	396, 829
BtsCI	GGATG	4 cut(s)	506, 525, 1190, 1948
BtsI	GCAGTG	2 cut(s)	579, 2573
BtsIMutI	CAGTG	7 cut(s)	287, 579, 1155, 1477, 2361, 2573, 2714
BveI	ACCTGC	1 cut(s)	601
Cac8I	GCNNGC	8 cut(s)	180, 577, 591, 624, 1954, 2121, 2200, 2580
CciI	TCATGA	3 cut(s)	459, 724, 2017
CfoI	GCGC	3 cut(s)	889, 2005, 2300
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	5 cut(s)	539, 540, 1656, 2076, 2704
CsiI	ACCWGGT	1 cut(s)	2767
CspAI	ACCGGT	1 cut(s)	329
DdeI	CTNAG	4 cut(s)	1352, 1386, 1424, 2492
DraI	TTTAAA	1 cut(s)	1497
DraIII	CACNNNGTG	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	5
Eam1104I	CTCTTC	3 cut(s)	1197, 1836, 1992
EarI	CTCTTC	3 cut(s)	1197, 1836, 1992
Eco130I	CCWWGG	2 cut(s)	396, 1962
Eco147I	AGGCCT	1 cut(s)	2347
Eco24I	GRGCYC	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	1441
Eco32I	GATATC	1 cut(s)	349
Eco57I	CTGAAG	4 cut(s)	1221, 1691, 1991, 2531
EcoRI	GAATTC	2 cut(s)	112, 1019
EcoRII	CCWGG	3 cut(s)	2455, 2662, 2767
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	2 cut(s)	396, 1962
EcoT22I	ATGCAT	1 cut(s)	1285
EcoT38I	GRGCYC	1 cut(s)	543
ErhI	CCWWGG	2 cut(s)	396, 1962
FalI	AAGNNNNNCTT	4 cut(s)	1842, 1874, 1989, 2021
FaqI	GGGAC	2 cut(s)	976, 2122
FauI	CCCGC	1 cut(s)	51
FauNDI	CATATG	2 cut(s)	1029, 2671
FbaI	TGATCA	1 cut(s)	2227
FblI	GTMKAC	1 cut(s)	1488
Fnu4HI	GCNGC	7 cut(s)	393, 697, 885, 1254, 1365, 2520, 2583
FokI	GGATG	4 cut(s)	513, 532, 1177, 1955
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	7 cut(s)	393, 697, 885, 1254, 1365, 2520, 2583
FspBI	CTAG	8 cut(s)	864, 1185, 1502, 1601, 2072, 2174, 2249, 2621
GlaI	GCGC	3 cut(s)	888, 2004, 2299
GluI	GCNGC	7 cut(s)	393, 697, 885, 1254, 1365, 2520, 2583
GsuI	CTGGAG	1 cut(s)	124
HaeII	RGCGCY	1 cut(s)	2006
HaeIII	GGCC	7 cut(s)	7, 541, 1658, 2078, 2347, 2448, 2706
HapII	CCGG	3 cut(s)	330, 666, 1071
HhaI	GCGC	3 cut(s)	889, 2005, 2300
Hin6I	GCGC	3 cut(s)	887, 2003, 2298
HinP1I	GCGC	3 cut(s)	887, 2003, 2298
HindIII	AAGCTT	1 cut(s)	2409
HpaII	CCGG	3 cut(s)	330, 666, 1071
HphI	GGTGA	2 cut(s)	940, 2471
Hpy166II	GTNNAC	7 cut(s)	285, 310, 1081, 1155, 1169, 1489, 2171
Hpy188I	TCNGA	9 cut(s)	346, 648, 741, 819, 1118, 1136, 1315, 1328, 1389
Hpy8I	GTNNAC	7 cut(s)	285, 310, 1081, 1155, 1169, 1489, 2171
HpyAV	CCTTC	5 cut(s)	904, 1398, 1715, 2062, 2506
HpyCH4III	ACNGT	5 cut(s)	282, 289, 941, 1159, 1493
HpyCH4IV	ACGT	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	7 cut(s)	581, 590, 884, 1700, 1784, 2312, 2617
HpyF3I	CTNAG	4 cut(s)	1352, 1386, 1424, 2492
HpySE526I	ACGT	1 cut(s)	38
HspAI	GCGC	3 cut(s)	887, 2003, 2298
Kpn2I	TCCGGA	1 cut(s)	665
Ksp22I	TGATCA	1 cut(s)	2227
LguI	GCTCTTC	1 cut(s)	1836
LmnI	GCTCC	6 cut(s)	598, 1298, 1961, 2608, 2647, 2775
Lsp1109I	GCAGC	7 cut(s)	379, 708, 871, 1240, 1376, 2506, 2569
LweI	GCATC	5 cut(s)	394, 510, 697, 817, 2545
MabI	ACCWGGT	1 cut(s)	2767
MaeI	CTAG	8 cut(s)	864, 1185, 1502, 1601, 2072, 2174, 2249, 2621
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	8 cut(s)	65, 1159, 1431, 1823, 1873, 2176, 2356, 2465
MfeI	CAATTG	2 cut(s)	1410, 1869
MflI	RGATCY	4 cut(s)	1348, 1512, 2245, 2659
MhlI	GDGCHC	3 cut(s)	543, 1083, 1900
MlsI	TGGCCA	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	7
MlyI	GAGTC	2 cut(s)	2042, 2104
MmeI	TCCRAC	5 cut(s)	734, 1114, 2237, 2625, 2753
Mox20I	TGGCCA	1 cut(s)	7
Mph1103I	ATGCAT	1 cut(s)	1285
MroI	TCCGGA	1 cut(s)	665
MroXI	GAANNNNTTC	1 cut(s)	824
MscI	TGGCCA	1 cut(s)	7
MslI	CAYNNNNRTG	1 cut(s)	1689
Msp20I	TGGCCA	1 cut(s)	7
MspA1I	CMGCKG	2 cut(s)	392, 1253
MspI	CCGG	3 cut(s)	330, 666, 1071
MspR9I	CCNGG	3 cut(s)	2457, 2664, 2769
MunI	CAATTG	2 cut(s)	1410, 1869
Mva1269I	GAATGC	1 cut(s)	763
MvaI	CCWGG	3 cut(s)	2457, 2664, 2769
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	7 cut(s)	581, 590, 884, 1700, 1784, 2312, 2617
NcoI	CCATGG	1 cut(s)	396
NdeI	CATATG	2 cut(s)	1029, 2671
NlaIV	GGNNCC	5 cut(s)	541, 2077, 2649, 2661, 2766
NmuCI	GTSAC	6 cut(s)	65, 1823, 1873, 2176, 2356, 2465
NsiI	ATGCAT	1 cut(s)	1285
NspI	RCATGY	7 cut(s)	32, 1182, 1782, 1956, 2123, 2156, 2692
PacI	TTAATTAA	1 cut(s)	1278
PaeI	GCATGC	2 cut(s)	1956, 2123
PagI	TCATGA	3 cut(s)	459, 724, 2017
PceI	AGGCCT	1 cut(s)	2347
PciI	ACATGT	3 cut(s)	28, 2152, 2688
PciSI	GCTCTTC	1 cut(s)	1836
PcsI	WCGNNNNNNNCGW	1 cut(s)	1311
PctI	GAATGC	1 cut(s)	763
PdmI	GAANNNNTTC	1 cut(s)	824
PfeI	GAWTC	8 cut(s)	144, 294, 834, 1242, 1390, 1607, 2340, 2351
PflMI	CCANNNNNTGG	1 cut(s)	1045
PinAI	ACCGGT	1 cut(s)	329
PkrI	GCNGC	7 cut(s)	394, 698, 886, 1255, 1366, 2521, 2584
PleI	GAGTC	2 cut(s)	2042, 2104
PpsI	GAGTC	2 cut(s)	2042, 2104
PscI	ACATGT	3 cut(s)	28, 2152, 2688
PshBI	ATTAAT	1 cut(s)	1278
PsiI	TTATAA	1 cut(s)	474
Psp6I	CCWGG	3 cut(s)	2455, 2662, 2767
PspGI	CCWGG	3 cut(s)	2455, 2662, 2767
PspN4I	GGNNCC	5 cut(s)	541, 2077, 2649, 2661, 2766
PspOMI	GGGCCC	1 cut(s)	539
PspPI	GGNCC	5 cut(s)	539, 540, 1656, 2076, 2704
PsrI	GAACNNNNNNTAC	2 cut(s)	1839, 1871
PsuI	RGATCY	4 cut(s)	1348, 1512, 2245, 2659
PvuII	CAGCTG	1 cut(s)	1253
RseI	CAYNNNNRTG	1 cut(s)	1689
SapI	GCTCTTC	1 cut(s)	1836
SatI	GCNGC	7 cut(s)	393, 697, 885, 1254, 1365, 2520, 2583
Sau96I	GGNCC	5 cut(s)	539, 540, 1656, 2076, 2704
SchI	GAGTC	2 cut(s)	2042, 2104
ScrFI	CCNGG	3 cut(s)	2457, 2664, 2769
SduI	GDGCHC	3 cut(s)	543, 1083, 1900
SexAI	ACCWGGT	1 cut(s)	2767
SfaNI	GCATC	5 cut(s)	394, 510, 697, 817, 2545
SfcI	CTRYAG	1 cut(s)	2383
SmiMI	CAYNNNNRTG	1 cut(s)	1689
SmlI	CTYRAG	3 cut(s)	161, 410, 1477
SmoI	CTYRAG	3 cut(s)	161, 410, 1477
SpeI	ACTAGT	1 cut(s)	2173
SphI	GCATGC	2 cut(s)	1956, 2123
SseBI	AGGCCT	1 cut(s)	2347
SsiI	CCGC	6 cut(s)	44, 93, 188, 390, 876, 1776
SspMI	CTAG	8 cut(s)	864, 1185, 1502, 1601, 2072, 2174, 2249, 2621
StuI	AGGCCT	1 cut(s)	2347
StyD4I	CCNGG	3 cut(s)	2455, 2662, 2767
StyI	CCWWGG	2 cut(s)	396, 1962
TaaI	ACNGT	5 cut(s)	282, 289, 941, 1159, 1493
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	7 cut(s)	213, 235, 530, 1305, 1586, 1995, 2497
TaqII	GACCGA	1 cut(s)	450
TatI	WGTACW	8 cut(s)	1152, 1168, 1181, 1463, 1581, 1855, 1881, 2184
TfiI	GAWTC	8 cut(s)	144, 294, 834, 1242, 1390, 1607, 2340, 2351
TscAI	CASTG	7 cut(s)	287, 586, 1162, 1477, 2361, 2580, 2714
TseFI	GTSAC	6 cut(s)	65, 1823, 1873, 2176, 2356, 2465
TseI	GCWGC	7 cut(s)	392, 696, 884, 1253, 1364, 2519, 2582
Tsp45I	GTSAC	6 cut(s)	65, 1823, 1873, 2176, 2356, 2465
TspGWI	ACGGA	3 cut(s)	818, 1816, 2409
TspRI	CASTG	7 cut(s)	287, 586, 1162, 1477, 2361, 2580, 2714
Van91I	CCANNNNNTGG	1 cut(s)	1045
VneI	GTGCAC	1 cut(s)	1079
VspI	ATTAAT	1 cut(s)	1278
XbaI	TCTAGA	1 cut(s)	1600
XceI	RCATGY	7 cut(s)	32, 1182, 1782, 1956, 2123, 2156, 2692
XmiI	GTMKAC	1 cut(s)	1488
XmnI	GAANNNNTTC	1 cut(s)	824
XspI	CTAG	8 cut(s)	864, 1185, 1502, 1601, 2072, 2174, 2249, 2621
Zsp2I	ATGCAT	1 cut(s)	1285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.