Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012277

Physical Location & Seq

Genomic Coordinates Forward (+)

65878345 .. 65881107

Gene Structure 2763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005205

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2712 bp

ATGATGATCTACCCAAAATCCCAAATGCTTACACGAATCCGAATGAAATCTCTCCTCAATCTCAAAAACCATCCCAAAATCTCACTCTCCACTCTCAAATCCATAACCTCCCTTGCCGCCGTTAAAAACCAATCATTTTCCCCCACCGAAATTCCCAGCCTTTTTGACCCCTTCCAATTCCTCAATGATTACACAAAATCAACTCACTGCACTATTACAAACACTAGAATCTTACATGCCCACTTCCTCAGAATCGACTTACTCCCATCCAATGTCGCCATTGCGAACTCTTTACTCGACTGCTACTGTAGGTCTGCTTCCATGGCTGATGCACTCCACCTGTTTGATGTAATTCCTGAGAGAAATGTGATCTCTTGGAATTTCATGGTCTCGGGTTATAACCGGAGCTCGATGTTTGAGAATTCATGGGATGTATTTTGCAGGATGCATTTTTCGGGTTTTGGGCCTGATGAGTTTACTTATGGTAGTGTTCTTTCGGCTTGCACTGCCTTGCAAGCTTCTAGTTTGGCTGAGCAGGTTTATTCGCTTGCAATGAAAAATGGGTTCTTTAGTAGTGATTATGTTCGGTCTGGAATGATAGACTTGTTTGCGAAAAGTGGCAGCTTTGAGGATGCTTTGAGGGTGTTTCGTGATGTTTCGTGTCGGAATGTTGTGATTTGGAATGGTGTTATCTCTGGGGCTGTGAGAAATGGAGAGAACAGAGTTGCGCTGGACCTTTTTCGACAAATGTGTTGTGGGTTTTTGTTGCCGAATAGCTTTACGTTTTCTAGTGTTTTGACTGCCTGTGCTGCACTTGGTGAAATTGGGATTGGGAGGGAGGTTCAAGGGTGGGTAATTAAGCGTGGTGAAGAAGATGTGTTTGTTGGGACTGCCATTGTAGACTTATATTCCAAATGTGGAAAGATGAATGAAGCTGTCAAGGAATTCTCCCGCATGCCAACACGTAATGTGGTGTCTTGGACTGCCATCATTTCTGGTTTTGTGGGGAAGGACGATTCTATCTCTGGCCTCAAGTTTTTCAGAGAAATGAGAAGAATGGGAGAGGAAATAAATAAGTTTACTATTACTAGCGTACTCACTGCATGTGCTAAACCATCCATGAGTGAAGAGGCAATCCAAATCCATTCACTGATATTAAAATCTGGACTCTATTCAGCTGCAGAAGTTGGATCCGCTTTAATTAATGCGTATTCAAAAATAGGAGCAGTTGATGTATCTGAAATGGTGTTCAGGGAGATAAGAACTTTAAAGGATCTGGGTACATGGGCTGCAATGATATCTTCTTTTGCGCAGAATCAAAATCCTGAAAGCGCTATTGGAGTTTTCCAGAGAATGTTACAGGAAAGTGTGAGACCAGATAAGTTTTCTACTTCTAGTGTCTTGAGTATTATAGACTATTTAGATGTAGGGAGGCAGATACATAGCTACACTCTTAAAGTTGGGTTGGCCTTTGACGCTTCTGTTGGTAGTTCCCTTTCCACAATGTATTCGAAATGCGATAGTCTAGAGGAATCTTACAAGGCATTTCAGCAAATTCGTGACAAAGACAATGTTTCATGGGCTTCAATGATTGCCGGTTTTTCAGAACATGGCTTTGCAGATCAAGCCCTTCAGTTATATCGAGAGATGCCATACAAAGAAATATTACCTGATCAGATGACTTTAGCTGCAATTCTAACTGCATGTTCTGCTTCTCGTTCCTTACTGATTGGTAAGGAAATTCATGGTCATGCTCTTCGTGCTGGAGTTGGAAGAGATGTAGTTGTTGGTGGTGCAATTGTGAACATGTACTCAAAATGCAGTGCTCTAGAATTGGCAAGGAAGGTGTTTGATATGCTTCCTCAAAAGGATGAAGTTGCATGCTCTTCACTGGTTTCAGGTTATTCCCAAAATGGGTGCATTGAAGAGGCACTTTTGCTGTTCCATTATATGCTAATGGCTGATTTGACCATTGATTCCTTCACAATTTCATCCATTCTTGGGGTCATTGCACTTTTGAATAGCCCAAGTATTGGAACTCAAATGCATGCCCACATCACAAAAGTTGGTTTGAATTCAGATGTTTCTGTTGGGAGCTCACTAGTGAGAATGTACTCAAAATGTGGAAGCATTGAAGATTGCCAGAAATCATTTGATCAAATCGAGAACCCTGACTTAATTTGCTGGACTGCTATGATTGCAAGCTATGCTCAGCATGGGAAAGGTGCAGAGGCTTTAAGAGGCTACGAGCTTTTGAAGGAAGAAGGAATCAAACCTGATTCAGTGACTTTTGTTGCAGTTTTATCTGCTTGTAGCCATAACGGATTGGTTGAAGAAGCTTATTTCTACTTCAATTCAATGGCTGCTGATTACGGAATTAAGCCTGGTTATCGTCACTATGCCTGTATGGTTGATGTTCTTGGCCGATCAGGGAGGCTGAAAGAGGCTGAGAGATTCATTTTCAATATGCCTATTGAACCTAATGGTTTAATATGGGGAACACTGCTTGCTGCTTGTGTGATACATAGATATGTAGAGCTTGGAAAGTTGACAGCTAAAAAGATTATGGATTTGGAGCCCTGTGATGCTAGCACATATGTTTCCCTTTCAAACATGTGTGCAGATTTGGGCCTGTGGGAAGAAGCCGAGCAGATTAGAAACCAGATGAGGGGAAATTGTATGAGGAAGGAACCTGGTTGGAGCTTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

904

Amino Acids

99.83

Weight (kDa)

6.18

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	121 - 168	4e-08	PPR repeat family
PPR_2	PF13041	222 - 270	1.4e-09	PPR repeat family
PPR_2	PF13041	322 - 371	1.7e-08	PPR repeat family
PPR_2	PF13041	523 - 569	4.6e-06	PPR repeat family
PPR_2	PF13041	724 - 772	3.6e-09	PPR repeat family
E_motif	PF20431	843 - 903	9.2e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74600
fragaria_vesca	FvH4_5g15030
malus_domestica	MD06G1192600.v1.1 MD14G1199400.v1.1
prunus_persica	Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1
pyrus_communis	pycom06g17070 pycom14g16530
rosa_chinensis	RchiOBHm_Chr7g0181221
rosa_laevigata	RLG00000005205
rosa_multiflora	Rmu_sc0001147.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272190
rosa_rugosa	Rorug06G0439600
rosa_samantha	Rh7AG041400 Rh7BG040700 Rh7CG042900 Rh7DG041200
rosa_wichuraiana	Rw7G003410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
Acc16I	TGCGCA	1 cut(s)	1311
Acc36I	ACCTGC	1 cut(s)	526
AccB7I	CCANNNNNTGG	1 cut(s)	2033
AccI	GTMKAC	1 cut(s)	900
AciI	CCGC	3 cut(s)	117, 952, 1194
AclWI	GGATC	3 cut(s)	1185, 1198, 1281
AcoI	YGGCCR	1 cut(s)	2422
AcsI	RAATTY	7 cut(s)	150, 379, 421, 944, 1554, 1740, 2074
AcuI	CTGAAG	1 cut(s)	1616
AdeI	CACNNNGTG	1 cut(s)	818
AfaI	GTAC	4 cut(s)	1095, 1282, 1811, 2114
AfeI	AGCGCT	1 cut(s)	1333
AfiI	CCNNNNNNNGG	4 cut(s)	1914, 2001, 2033, 2668
AflIII	ACRYGT	3 cut(s)	962, 1806, 2613
AhlI	ACTAGT	1 cut(s)	2101
AjnI	CCWGG	2 cut(s)	2383, 2692
AjuI	GAANNNNNNNTTGG	4 cut(s)	813, 845, 1320, 1352
Alw21I	GWGCWC	3 cut(s)	410, 1828, 2099
Alw26I	GTCTC	2 cut(s)	394, 1366
AlwI	GGATC	3 cut(s)	1185, 1198, 1281
Ama87I	CYCGRG	1 cut(s)	391
Aor51HI	AGCGCT	1 cut(s)	1333
AoxI	GGCC	5 cut(s)	464, 1027, 1467, 2422, 2629
ApeKI	GCWGC	7 cut(s)	621, 809, 1178, 1289, 1688, 2363, 2510
ApoI	RAATTY	7 cut(s)	150, 379, 421, 944, 1554, 1740, 2074
AseI	ATTAAT	1 cut(s)	1203
AspLEI	GCGC	3 cut(s)	730, 1312, 1334
AspS9I	GGNCC	3 cut(s)	464, 733, 2629
AsuHPI	GGTGA	2 cut(s)	830, 878
AsuII	TTCGAA	1 cut(s)	1511
AsuNHI	GCTAGC	1 cut(s)	2588
AvaI	CYCGRG	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	733
BamHI	GGATCC	1 cut(s)	1190
BanII	GRGCYC	3 cut(s)	410, 2099, 2580
BarI	GAAGNNNNNNTAC	2 cut(s)	301, 333
Bbv12I	GWGCWC	3 cut(s)	410, 1828, 2099
BbvI	GCAGC	7 cut(s)	633, 796, 1165, 1276, 1675, 2350, 2497
BccI	CCATC	4 cut(s)	78, 274, 995, 1123
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	2 cut(s)	2385, 2694
BclI	TGATCA	2 cut(s)	1672, 2155
BcoDI	GTCTC	2 cut(s)	394, 1366
BcuI	ACTAGT	1 cut(s)	2101
BfaI	CTAG	9 cut(s)	225, 522, 789, 1089, 1395, 1526, 1829, 2102, 2589
BfmI	CTRYAG	2 cut(s)	307, 1179
BfoI	RGCGCY	1 cut(s)	1335
BfuAI	ACCTGC	1 cut(s)	526
BisI	GCNGC	8 cut(s)	117, 622, 810, 1179, 1290, 1689, 2364, 2511
BlpI	GCTNAGC	2 cut(s)	531, 2211
BlsI	GCNGC	8 cut(s)	118, 623, 811, 1180, 1291, 1690, 2365, 2512
Bme1390I	CCNGG	2 cut(s)	2385, 2694
Bme18I	GGWCC	1 cut(s)	733
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	3 cut(s)	464, 733, 2629
BmiI	GGNNCC	3 cut(s)	1192, 2577, 2691
BmrFI	CCNGG	2 cut(s)	2385, 2694
BmsI	GCATC	5 cut(s)	319, 435, 622, 1638, 2575
BmtI	GCTAGC	1 cut(s)	2592
BpmI	CTGGAG	1 cut(s)	1785
Bpu1102I	GCTNAGC	2 cut(s)	531, 2211
Bpu14I	TTCGAA	1 cut(s)	1511
BpuEI	CTTGAG	2 cut(s)	1016, 1423
BsaAI	YACGTR	1 cut(s)	965
BsaI	GGTCTC	2 cut(s)	394, 1366
BsaJI	CCNNGG	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	4 cut(s)	1914, 2001, 2033, 2668
Bse118I	RCCGGY	1 cut(s)	1595
Bse1I	ACTGG	1 cut(s)	1896
Bse3DI	GCAATG	4 cut(s)	279, 558, 1299, 2007
BseBI	CCWGG	2 cut(s)	2385, 2694
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	8 cut(s)	70, 266, 436, 450, 637, 1115, 1876, 1991
BseLI	CCNNNNNNNGG	4 cut(s)	1914, 2001, 2033, 2668
BseMI	GCAATG	4 cut(s)	279, 558, 1299, 2007
BseMII	CTCAG	5 cut(s)	262, 348, 522, 2225, 2439
BseNI	ACTGG	1 cut(s)	1896
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	7 cut(s)	633, 796, 1165, 1276, 1675, 2350, 2497
BseYI	CCCAGC	1 cut(s)	155
BsgI	GTGCAG	4 cut(s)	193, 795, 2247, 2640
BshFI	GGCC	5 cut(s)	466, 1029, 1469, 2424, 2631
BsiHKAI	GWGCWC	3 cut(s)	410, 1828, 2099
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	2 cut(s)	403, 1596
BslFI	GGGAC	1 cut(s)	901
BslI	CCNNNNNNNGG	4 cut(s)	1914, 2001, 2033, 2668
BsmAI	GTCTC	2 cut(s)	394, 1366
BsmFI	GGGAC	1 cut(s)	901
BsnI	GGCC	5 cut(s)	466, 1029, 1469, 2424, 2631
Bso31I	GGTCTC	2 cut(s)	394, 1366
BsoBI	CYCGRG	1 cut(s)	391
Bsp119I	TTCGAA	1 cut(s)	1511
Bsp1286I	GDGCHC	4 cut(s)	410, 1828, 2099, 2580
Bsp143I	GATC	8 cut(s)	6, 369, 1190, 1273, 1621, 1672, 2155, 2426
Bsp1720I	GCTNAGC	2 cut(s)	531, 2211
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	3 cut(s)	117, 952, 1194
BspANI	GGCC	5 cut(s)	466, 1029, 1469, 2424, 2631
BspCNI	CTCAG	5 cut(s)	261, 349, 523, 2224, 2440
BspLI	GGNNCC	3 cut(s)	1192, 2577, 2691
BspMAI	CTGCAG	1 cut(s)	1183
BspMI	ACCTGC	1 cut(s)	526
BspOI	GCTAGC	1 cut(s)	2592
BspPI	GGATC	3 cut(s)	1185, 1198, 1281
BspQI	GCTCTTC	2 cut(s)	1761, 1891
BspT104I	TTCGAA	1 cut(s)	1511
BspTNI	GGTCTC	2 cut(s)	394, 1366
BsrDI	GCAATG	4 cut(s)	279, 558, 1299, 2007
BsrFI	RCCGGY	1 cut(s)	1595
BsrI	ACTGG	1 cut(s)	1896
BssAI	RCCGGY	1 cut(s)	1595
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	8 cut(s)	6, 369, 1190, 1273, 1621, 1672, 2155, 2426
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	2385, 2694
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	5 cut(s)	1122, 1761, 1768, 1891, 1920
BstAPI	GCANNNNNTGC	2 cut(s)	1709, 2207
BstBAI	YACGTR	1 cut(s)	965
BstBI	TTCGAA	1 cut(s)	1511
BstC8I	GCNNGC	9 cut(s)	502, 516, 549, 956, 1882, 2049, 2203, 2508, 2590
BstDEI	CTNAG	6 cut(s)	248, 357, 531, 2211, 2448, 2704
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	8 cut(s)	70, 266, 436, 450, 637, 1115, 1876, 1991
BstH2I	RGCGCY	1 cut(s)	1335
BstHHI	GCGC	3 cut(s)	730, 1312, 1334
BstKTI	GATC	8 cut(s)	9, 372, 1193, 1276, 1624, 1675, 2158, 2429
BstMAI	GTCTC	2 cut(s)	394, 1366
BstMBI	GATC	8 cut(s)	6, 369, 1190, 1273, 1621, 1672, 2155, 2426
BstNI	CCWGG	2 cut(s)	2385, 2694
BstNSI	RCATGY	8 cut(s)	239, 958, 1107, 1707, 1810, 1884, 2051, 2617
BstSCI	CCNGG	2 cut(s)	2383, 2692
BstSFI	CTRYAG	2 cut(s)	307, 1179
BstV1I	GCAGC	7 cut(s)	633, 796, 1165, 1276, 1675, 2350, 2497
BstX2I	RGATCY	2 cut(s)	1190, 1273
BstYI	RGATCY	2 cut(s)	1190, 1273
BsuRI	GGCC	5 cut(s)	466, 1029, 1469, 2424, 2631
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	8 cut(s)	70, 266, 436, 450, 637, 1115, 1876, 1991
BtsI	GCAGTG	5 cut(s)	205, 504, 1098, 1828, 2501
BtsIMutI	CAGTG	8 cut(s)	205, 504, 1098, 1148, 1828, 1889, 2289, 2501
BveI	ACCTGC	1 cut(s)	526
Cac8I	GCNNGC	9 cut(s)	502, 516, 549, 956, 1882, 2049, 2203, 2508, 2590
CfoI	GCGC	3 cut(s)	730, 1312, 1334
Cfr10I	RCCGGY	1 cut(s)	1595
Cfr13I	GGNCC	3 cut(s)	464, 733, 2629
CseI	GACGC	1 cut(s)	1484
CsiI	ACCWGGT	1 cut(s)	2692
Csp6I	GTAC	4 cut(s)	1094, 1281, 1810, 2113
CviQI	GTAC	4 cut(s)	1094, 1281, 1810, 2113
DdeI	CTNAG	6 cut(s)	248, 357, 531, 2211, 2448, 2704
DpnI	GATC	8 cut(s)	8, 371, 1192, 1275, 1623, 1674, 2157, 2428
DpnII	GATC	8 cut(s)	6, 369, 1190, 1273, 1621, 1672, 2155, 2426
DraI	TTTAAA	1 cut(s)	1269
DraIII	CACNNNGTG	1 cut(s)	818
EaeI	YGGCCR	1 cut(s)	2422
Eam1104I	CTCTTC	5 cut(s)	1122, 1761, 1768, 1891, 1920
EarI	CTCTTC	5 cut(s)	1122, 1761, 1768, 1891, 1920
Ecl136II	GAGCTC	2 cut(s)	408, 2097
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	3 cut(s)	410, 2099, 2580
Eco31I	GGTCTC	2 cut(s)	394, 1366
Eco32I	GATATC	1 cut(s)	1299
Eco47I	GGWCC	1 cut(s)	733
Eco47III	AGCGCT	1 cut(s)	1333
Eco53kI	GAGCTC	2 cut(s)	408, 2097
Eco57I	CTGAAG	1 cut(s)	1616
Eco88I	CYCGRG	1 cut(s)	391
EcoICRI	GAGCTC	2 cut(s)	408, 2097
EcoRI	GAATTC	3 cut(s)	421, 944, 2074
EcoRII	CCWGG	2 cut(s)	2383, 2692
EcoRV	GATATC	1 cut(s)	1299
EcoT14I	CCWWGG	1 cut(s)	321
EcoT22I	ATGCAT	2 cut(s)	450, 2049
EcoT38I	GRGCYC	3 cut(s)	410, 2099, 2580
ErhI	CCWWGG	1 cut(s)	321
FalI	AAGNNNNNCTT	2 cut(s)	1917, 1949
FaqI	GGGAC	1 cut(s)	901
FauI	CCCGC	1 cut(s)	959
FauNDI	CATATG	1 cut(s)	2596
FbaI	TGATCA	2 cut(s)	1672, 2155
FblI	GTMKAC	1 cut(s)	900
Fnu4HI	GCNGC	8 cut(s)	117, 622, 810, 1179, 1290, 1689, 2364, 2511
FokI	GGATG	8 cut(s)	57, 253, 443, 457, 644, 1102, 1883, 1978
FriOI	GRGCYC	3 cut(s)	410, 2099, 2580
Fsp4HI	GCNGC	8 cut(s)	117, 622, 810, 1179, 1290, 1689, 2364, 2511
FspBI	CTAG	9 cut(s)	225, 522, 789, 1089, 1395, 1526, 1829, 2102, 2589
FspI	TGCGCA	1 cut(s)	1311
GlaI	GCGC	3 cut(s)	729, 1311, 1333
GluI	GCNGC	8 cut(s)	117, 622, 810, 1179, 1290, 1689, 2364, 2511
GsaI	CCCAGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	1785
HaeII	RGCGCY	1 cut(s)	1335
HaeIII	GGCC	5 cut(s)	466, 1029, 1469, 2424, 2631
HapII	CCGG	2 cut(s)	403, 1596
HgaI	GACGC	1 cut(s)	1484
HhaI	GCGC	3 cut(s)	730, 1312, 1334
Hin6I	GCGC	3 cut(s)	728, 1310, 1332
HinP1I	GCGC	3 cut(s)	728, 1310, 1332
HincII	GTYRAC	1 cut(s)	2550
HindII	GTYRAC	1 cut(s)	2550
HindIII	AAGCTT	2 cut(s)	516, 2337
HpaII	CCGG	2 cut(s)	403, 1596
HphI	GGTGA	2 cut(s)	830, 878
Hpy166II	GTNNAC	5 cut(s)	477, 901, 1080, 1804, 2550
Hpy188I	TCNGA	8 cut(s)	41, 251, 666, 1043, 1240, 1606, 1677, 2080
Hpy8I	GTNNAC	5 cut(s)	477, 901, 1080, 1804, 2550
HpyAV	CCTTC	8 cut(s)	181, 1003, 1640, 1837, 1990, 2251, 2258, 2680
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	2 cut(s)	782, 964
HpyF3I	CTNAG	6 cut(s)	248, 357, 531, 2211, 2448, 2704
HpySE526I	ACGT	2 cut(s)	782, 964
HspAI	GCGC	3 cut(s)	728, 1310, 1332
Ksp22I	TGATCA	2 cut(s)	1672, 2155
Kzo9I	GATC	8 cut(s)	6, 369, 1190, 1273, 1621, 1672, 2155, 2426
LguI	GCTCTTC	2 cut(s)	1761, 1891
LmnI	GCTCC	5 cut(s)	405, 1223, 2094, 2575, 2700
Lsp1109I	GCAGC	7 cut(s)	633, 796, 1165, 1276, 1675, 2350, 2497
LweI	GCATC	5 cut(s)	319, 435, 622, 1638, 2575
MabI	ACCWGGT	1 cut(s)	2692
MaeI	CTAG	9 cut(s)	225, 522, 789, 1089, 1395, 1526, 1829, 2102, 2589
MaeII	ACGT	2 cut(s)	782, 964
MaeIII	GTNAC	4 cut(s)	1356, 1559, 2284, 2393
MalI	GATC	8 cut(s)	8, 371, 1192, 1275, 1623, 1674, 2157, 2428
MboI	GATC	8 cut(s)	6, 369, 1190, 1273, 1621, 1672, 2155, 2426
MfeI	CAATTG	1 cut(s)	1797
MflI	RGATCY	2 cut(s)	1190, 1273
MhlI	GDGCHC	4 cut(s)	410, 1828, 2099, 2580
MlyI	GAGTC	1 cut(s)	1161
MmeI	TCCRAC	4 cut(s)	644, 1168, 1750, 2678
Mph1103I	ATGCAT	2 cut(s)	450, 2049
MslI	CAYNNNNRTG	2 cut(s)	1749, 2529
MspA1I	CMGCKG	1 cut(s)	1178
MspI	CCGG	2 cut(s)	403, 1596
MspR9I	CCNGG	2 cut(s)	2385, 2694
MunI	CAATTG	1 cut(s)	1797
MvaI	CCWGG	2 cut(s)	2385, 2694
NcoI	CCATGG	1 cut(s)	321
NdeI	CATATG	1 cut(s)	2596
NdeII	GATC	8 cut(s)	6, 369, 1190, 1273, 1621, 1672, 2155, 2426
NheI	GCTAGC	1 cut(s)	2588
NlaIV	GGNNCC	3 cut(s)	1192, 2577, 2691
NmeAIII	GCCGAG	1 cut(s)	2671
NmuCI	GTSAC	3 cut(s)	1559, 2284, 2393
NsbI	TGCGCA	1 cut(s)	1311
NsiI	ATGCAT	2 cut(s)	450, 2049
NspI	RCATGY	8 cut(s)	239, 958, 1107, 1707, 1810, 1884, 2051, 2617
NspV	TTCGAA	1 cut(s)	1511
PacI	TTAATTAA	1 cut(s)	1203
PaeI	GCATGC	3 cut(s)	958, 1884, 2051
PciI	ACATGT	2 cut(s)	1806, 2613
PciSI	GCTCTTC	2 cut(s)	1761, 1891
PflMI	CCANNNNNTGG	1 cut(s)	2033
PkrI	GCNGC	8 cut(s)	118, 623, 811, 1180, 1291, 1690, 2365, 2512
PleI	GAGTC	1 cut(s)	1161
PpsI	GAGTC	1 cut(s)	1161
Ppu21I	YACGTR	1 cut(s)	965
PscI	ACATGT	2 cut(s)	1806, 2613
PshBI	ATTAAT	1 cut(s)	1203
PsiI	TTATAA	1 cut(s)	399
Psp124BI	GAGCTC	2 cut(s)	410, 2099
Psp6I	CCWGG	2 cut(s)	2383, 2692
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	2 cut(s)	2383, 2692
PspN4I	GGNNCC	3 cut(s)	1192, 2577, 2691
PspPI	GGNCC	3 cut(s)	464, 733, 2629
PstI	CTGCAG	1 cut(s)	1183
PsuI	RGATCY	2 cut(s)	1190, 1273
PvuII	CAGCTG	1 cut(s)	1178
RsaI	GTAC	4 cut(s)	1095, 1282, 1811, 2114
RsaNI	GTAC	4 cut(s)	1094, 1281, 1810, 2113
RseI	CAYNNNNRTG	2 cut(s)	1749, 2529
SacI	GAGCTC	2 cut(s)	410, 2099
SapI	GCTCTTC	2 cut(s)	1761, 1891
SatI	GCNGC	8 cut(s)	117, 622, 810, 1179, 1290, 1689, 2364, 2511
Sau3AI	GATC	8 cut(s)	6, 369, 1190, 1273, 1621, 1672, 2155, 2426
Sau96I	GGNCC	3 cut(s)	464, 733, 2629
SchI	GAGTC	1 cut(s)	1161
ScrFI	CCNGG	2 cut(s)	2385, 2694
SduI	GDGCHC	4 cut(s)	410, 1828, 2099, 2580
SexAI	ACCWGGT	1 cut(s)	2692
SfaNI	GCATC	5 cut(s)	319, 435, 622, 1638, 2575
SfcI	CTRYAG	2 cut(s)	307, 1179
SfuI	TTCGAA	1 cut(s)	1511
SinI	GGWCC	1 cut(s)	733
SmiMI	CAYNNNNRTG	2 cut(s)	1749, 2529
SmlI	CTYRAG	2 cut(s)	1031, 1402
SmoI	CTYRAG	2 cut(s)	1031, 1402
SpeI	ACTAGT	1 cut(s)	2101
SphI	GCATGC	3 cut(s)	958, 1884, 2051
SsiI	CCGC	3 cut(s)	117, 952, 1194
SspI	AATATT	1 cut(s)	1665
SspMI	CTAG	9 cut(s)	225, 522, 789, 1089, 1395, 1526, 1829, 2102, 2589
SstI	GAGCTC	2 cut(s)	410, 2099
StyD4I	CCNGG	2 cut(s)	2383, 2692
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	2 cut(s)	785, 967
TaqI	TCGA	7 cut(s)	255, 297, 410, 742, 1511, 1642, 2163
TaqII	GACCGA	1 cut(s)	576
TatI	WGTACW	2 cut(s)	1809, 2112
TauI	GCSGC	1 cut(s)	119
TscAI	CASTG	8 cut(s)	212, 511, 1105, 1155, 1828, 1896, 2289, 2508
TseFI	GTSAC	3 cut(s)	1559, 2284, 2393
TseI	GCWGC	7 cut(s)	621, 809, 1178, 1289, 1688, 2363, 2510
Tsp45I	GTSAC	3 cut(s)	1559, 2284, 2393
TspGWI	ACGGA	2 cut(s)	2337, 2388
TspRI	CASTG	8 cut(s)	212, 511, 1105, 1155, 1828, 1896, 2289, 2508
Van91I	CCANNNNNTGG	1 cut(s)	2033
VpaK11BI	GGWCC	1 cut(s)	733
VspI	ATTAAT	1 cut(s)	1203
XapI	RAATTY	7 cut(s)	150, 379, 421, 944, 1554, 1740, 2074
XbaI	TCTAGA	2 cut(s)	1525, 1828
XceI	RCATGY	8 cut(s)	239, 958, 1107, 1707, 1810, 1884, 2051, 2617
XmiI	GTMKAC	1 cut(s)	900
XspI	CTAG	9 cut(s)	225, 522, 789, 1089, 1395, 1526, 1829, 2102, 2589
Zsp2I	ATGCAT	2 cut(s)	450, 2049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.