Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G74600 |
| fragaria_vesca | FvH4_5g15030 |
| malus_domestica | MD06G1192600.v1.1 MD14G1199400.v1.1 |
| prunus_persica | Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1 |
| pyrus_communis | pycom06g17070 pycom14g16530 |
| rosa_chinensis | RchiOBHm_Chr7g0181221 |
| rosa_laevigata | RLG00000005205 |
| rosa_multiflora | Rmu_sc0001147.1_g000014 |
| rosa_roxburghii | Rroxscaffold_3G00272190 |
| rosa_rugosa | Rorug06G0439600 |
| rosa_samantha | Rh7AG041400 Rh7BG040700 Rh7CG042900 Rh7DG041200 |
| rosa_wichuraiana | Rw7G003410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 630 |
| AccII | CGCG | 1 cut(s) | 81 |
| AccIII | TCCGGA | 1 cut(s) | 564 |
| AciI | CCGC | 1 cut(s) | 81 |
| AclI | AACGTT | 1 cut(s) | 1667 |
| AclWI | GGATC | 4 cut(s) | 498, 649, 1796, 1809 |
| AcsI | RAATTY | 6 cut(s) | 161, 251, 357, 538, 771, 957 |
| AcuI | CTGAAG | 3 cut(s) | 363, 833, 1133 |
| AfaI | GTAC | 7 cut(s) | 296, 312, 725, 885, 999, 1025, 1328 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 187, 405, 1128, 1215, 1707, 1885 |
| AflIII | ACRYGT | 2 cut(s) | 1294, 1830 |
| AjnI | CCWGG | 3 cut(s) | 1597, 1804, 1909 |
| Alw21I | GWGCWC | 2 cut(s) | 225, 1042 |
| Alw26I | GTCTC | 2 cut(s) | 452, 583 |
| Alw44I | GTGCAC | 1 cut(s) | 221 |
| AlwI | GGATC | 4 cut(s) | 498, 649, 1796, 1809 |
| Ama87I | CYCGRG | 1 cut(s) | 494 |
| Aor13HI | TCCGGA | 1 cut(s) | 564 |
| AoxI | GGCC | 5 cut(s) | 798, 1218, 1487, 1588, 1846 |
| ApaLI | GTGCAC | 1 cut(s) | 221 |
| ApeKI | GCWGC | 4 cut(s) | 395, 506, 1661, 1724 |
| ApoI | RAATTY | 6 cut(s) | 161, 251, 357, 538, 771, 957 |
| AspLEI | GCGC | 2 cut(s) | 1147, 1811 |
| AspS9I | GGNCC | 3 cut(s) | 798, 1218, 1846 |
| AsuHPI | GGTGA | 2 cut(s) | 82, 1613 |
| AvaI | CYCGRG | 1 cut(s) | 494 |
| BaeGI | GKGCMC | 1 cut(s) | 225 |
| BamHI | GGATCC | 1 cut(s) | 1801 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 867, 899 |
| BbsI | GAAGAC | 1 cut(s) | 655 |
| Bbv12I | GWGCWC | 2 cut(s) | 225, 1042 |
| BbvI | GCAGC | 4 cut(s) | 382, 518, 1648, 1711 |
| BccI | CCATC | 6 cut(s) | 212, 340, 469, 1165, 1774, 1801 |
| BceAI | ACGGC | 1 cut(s) | 383 |
| BciT130I | CCWGG | 3 cut(s) | 1599, 1806, 1911 |
| BclI | TGATCA | 1 cut(s) | 1369 |
| BcoDI | GTCTC | 2 cut(s) | 452, 583 |
| BfaI | CTAG | 5 cut(s) | 327, 644, 743, 1391, 1763 |
| BfmI | CTRYAG | 2 cut(s) | 834, 1525 |
| BfoI | RGCGCY | 1 cut(s) | 1148 |
| BglII | AGATCT | 1 cut(s) | 1387 |
| BisI | GCNGC | 4 cut(s) | 396, 507, 1662, 1725 |
| BlsI | GCNGC | 4 cut(s) | 397, 508, 1663, 1726 |
| Bme1390I | CCNGG | 3 cut(s) | 1599, 1806, 1911 |
| BmeT110I | CYCGRG | 1 cut(s) | 494 |
| BmgT120I | GGNCC | 3 cut(s) | 798, 1218, 1846 |
| BmiI | GGNNCC | 4 cut(s) | 1219, 1791, 1803, 1908 |
| BmrFI | CCNGG | 3 cut(s) | 1599, 1806, 1911 |
| BmsI | GCATC | 1 cut(s) | 1687 |
| BpiI | GAAGAC | 1 cut(s) | 655 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1408, 1440 |
| BpuEI | CTTGAG | 1 cut(s) | 640 |
| BsaI | GGTCTC | 1 cut(s) | 583 |
| BsaJI | CCNNGG | 1 cut(s) | 1104 |
| BsaWI | WCCGGW | 3 cut(s) | 212, 564, 812 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 187, 405, 1128, 1215, 1707, 1885 |
| Bse1I | ACTGG | 3 cut(s) | 612, 952, 1849 |
| Bse3DI | GCAATG | 1 cut(s) | 1221 |
| BseAI | TCCGGA | 1 cut(s) | 564 |
| BseBI | CCWGG | 3 cut(s) | 1599, 1806, 1911 |
| BseDI | CCNNGG | 1 cut(s) | 1104 |
| BseGI | GGATG | 2 cut(s) | 332, 1090 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 187, 405, 1128, 1215, 1707, 1885 |
| BseMI | GCAATG | 1 cut(s) | 1221 |
| BseMII | CTCAG | 1 cut(s) | 542 |
| BseNI | ACTGG | 3 cut(s) | 612, 952, 1849 |
| BseRI | GAGGAG | 2 cut(s) | 996, 1069 |
| BseSI | GKGCMC | 1 cut(s) | 225 |
| BseXI | GCAGC | 4 cut(s) | 382, 518, 1648, 1711 |
| BsgI | GTGCAG | 2 cut(s) | 105, 1461 |
| Bsh1236I | CGCG | 1 cut(s) | 81 |
| BshFI | GGCC | 5 cut(s) | 800, 1220, 1489, 1590, 1848 |
| BsiHKAI | GWGCWC | 2 cut(s) | 225, 1042 |
| BsiHKCI | CYCGRG | 1 cut(s) | 494 |
| BsiSI | CCGG | 3 cut(s) | 213, 565, 813 |
| BslFI | GGGAC | 3 cut(s) | 118, 511, 1264 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 187, 405, 1128, 1215, 1707, 1885 |
| BsmAI | GTCTC | 2 cut(s) | 452, 583 |
| BsmBI | CGTCTC | 1 cut(s) | 452 |
| BsmFI | GGGAC | 3 cut(s) | 118, 511, 1264 |
| BsmI | GAATGC | 1 cut(s) | 29 |
| BsnI | GGCC | 5 cut(s) | 800, 1220, 1489, 1590, 1848 |
| Bso31I | GGTCTC | 1 cut(s) | 583 |
| BsoBI | CYCGRG | 1 cut(s) | 494 |
| Bsp1286I | GDGCHC | 2 cut(s) | 225, 1042 |
| Bsp13I | TCCGGA | 1 cut(s) | 564 |
| BspACI | CCGC | 1 cut(s) | 81 |
| BspANI | GGCC | 5 cut(s) | 800, 1220, 1489, 1590, 1848 |
| BspCNI | CTCAG | 1 cut(s) | 541 |
| BspEI | TCCGGA | 1 cut(s) | 564 |
| BspFNI | CGCG | 1 cut(s) | 81 |
| BspHI | TCATGA | 1 cut(s) | 1159 |
| BspLI | GGNNCC | 4 cut(s) | 1219, 1791, 1803, 1908 |
| BspMAI | CTGCAG | 1 cut(s) | 838 |
| BspPI | GGATC | 4 cut(s) | 498, 649, 1796, 1809 |
| BspQI | GCTCTTC | 1 cut(s) | 978 |
| BspTNI | GGTCTC | 1 cut(s) | 583 |
| BsrDI | GCAATG | 1 cut(s) | 1221 |
| BsrI | ACTGG | 3 cut(s) | 612, 952, 1849 |
| BssECI | CCNNGG | 1 cut(s) | 1104 |
| BssT1I | CCWWGG | 1 cut(s) | 1104 |
| Bst2UI | CCWGG | 3 cut(s) | 1599, 1806, 1911 |
| Bst4CI | ACNGT | 4 cut(s) | 301, 463, 635, 919 |
| Bst6I | CTCTTC | 3 cut(s) | 339, 978, 1134 |
| BstC8I | GCNNGC | 2 cut(s) | 1263, 1722 |
| BstDEI | CTNAG | 2 cut(s) | 528, 1634 |
| BstF5I | GGATG | 2 cut(s) | 332, 1090 |
| BstFNI | CGCG | 1 cut(s) | 81 |
| BstH2I | RGCGCY | 1 cut(s) | 1148 |
| BstHHI | GCGC | 2 cut(s) | 1147, 1811 |
| BstMAI | GTCTC | 2 cut(s) | 452, 583 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 842, 1454, 1759 |
| BstNI | CCWGG | 3 cut(s) | 1599, 1806, 1911 |
| BstNSI | RCATGY | 6 cut(s) | 324, 1098, 1265, 1298, 1724, 1834 |
| BstSCI | CCNGG | 3 cut(s) | 1597, 1804, 1909 |
| BstSFI | CTRYAG | 2 cut(s) | 834, 1525 |
| BstSLI | GKGCMC | 1 cut(s) | 225 |
| BstUI | CGCG | 1 cut(s) | 81 |
| BstV1I | GCAGC | 4 cut(s) | 382, 518, 1648, 1711 |
| BstV2I | GAAGAC | 1 cut(s) | 655 |
| BstX2I | RGATCY | 4 cut(s) | 490, 654, 1387, 1801 |
| BstYI | RGATCY | 4 cut(s) | 490, 654, 1387, 1801 |
| BsuRI | GGCC | 5 cut(s) | 800, 1220, 1489, 1590, 1848 |
| BtsCI | GGATG | 2 cut(s) | 332, 1090 |
| BtsI | GCAGTG | 2 cut(s) | 49, 1715 |
| BtsIMutI | CAGTG | 6 cut(s) | 49, 297, 619, 1503, 1715, 1856 |
| Cac8I | GCNNGC | 2 cut(s) | 1263, 1722 |
| CciI | TCATGA | 1 cut(s) | 1159 |
| CfoI | GCGC | 2 cut(s) | 1147, 1811 |
| Cfr13I | GGNCC | 3 cut(s) | 798, 1218, 1846 |
| CsiI | ACCWGGT | 1 cut(s) | 1909 |
| Csp6I | GTAC | 7 cut(s) | 295, 311, 724, 884, 998, 1024, 1327 |
| CviQI | GTAC | 7 cut(s) | 295, 311, 724, 884, 998, 1024, 1327 |
| DdeI | CTNAG | 2 cut(s) | 528, 1634 |
| DraI | TTTAAA | 1 cut(s) | 639 |
| Eam1104I | CTCTTC | 3 cut(s) | 339, 978, 1134 |
| EarI | CTCTTC | 3 cut(s) | 339, 978, 1134 |
| Eco130I | CCWWGG | 1 cut(s) | 1104 |
| Eco147I | AGGCCT | 1 cut(s) | 1489 |
| Eco31I | GGTCTC | 1 cut(s) | 583 |
| Eco57I | CTGAAG | 3 cut(s) | 363, 833, 1133 |
| Eco88I | CYCGRG | 1 cut(s) | 494 |
| EcoRI | GAATTC | 1 cut(s) | 161 |
| EcoRII | CCWGG | 3 cut(s) | 1597, 1804, 1909 |
| EcoT14I | CCWWGG | 1 cut(s) | 1104 |
| ErhI | CCWWGG | 1 cut(s) | 1104 |
| Esp3I | CGTCTC | 1 cut(s) | 452 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 984, 1016, 1131, 1163 |
| FaqI | GGGAC | 3 cut(s) | 118, 511, 1264 |
| FauNDI | CATATG | 1 cut(s) | 1813 |
| FbaI | TGATCA | 1 cut(s) | 1369 |
| FblI | GTMKAC | 1 cut(s) | 630 |
| Fnu4HI | GCNGC | 4 cut(s) | 396, 507, 1662, 1725 |
| FokI | GGATG | 2 cut(s) | 319, 1097 |
| Fsp4HI | GCNGC | 4 cut(s) | 396, 507, 1662, 1725 |
| FspBI | CTAG | 5 cut(s) | 327, 644, 743, 1391, 1763 |
| GlaI | GCGC | 2 cut(s) | 1146, 1810 |
| GluI | GCNGC | 4 cut(s) | 396, 507, 1662, 1725 |
| HaeII | RGCGCY | 1 cut(s) | 1148 |
| HaeIII | GGCC | 5 cut(s) | 800, 1220, 1489, 1590, 1848 |
| HapII | CCGG | 3 cut(s) | 213, 565, 813 |
| HhaI | GCGC | 2 cut(s) | 1147, 1811 |
| Hin6I | GCGC | 2 cut(s) | 1145, 1809 |
| HinP1I | GCGC | 2 cut(s) | 1145, 1809 |
| HindIII | AAGCTT | 1 cut(s) | 1551 |
| HinfI | GANTC | 7 cut(s) | 384, 532, 749, 1190, 1252, 1482, 1493 |
| HpaII | CCGG | 3 cut(s) | 213, 565, 813 |
| HphI | GGTGA | 2 cut(s) | 82, 1613 |
| Hpy166II | GTNNAC | 5 cut(s) | 223, 297, 311, 631, 1313 |
| Hpy188I | TCNGA | 4 cut(s) | 7, 457, 470, 531 |
| Hpy8I | GTNNAC | 5 cut(s) | 223, 297, 311, 631, 1313 |
| HpyAV | CCTTC | 3 cut(s) | 540, 857, 1204 |
| HpyCH4III | ACNGT | 4 cut(s) | 301, 463, 635, 919 |
| HpyCH4IV | ACGT | 2 cut(s) | 169, 1667 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 842, 1454, 1759 |
| HpyF3I | CTNAG | 2 cut(s) | 528, 1634 |
| HpySE526I | ACGT | 2 cut(s) | 169, 1667 |
| HspAI | GCGC | 2 cut(s) | 1145, 1809 |
| Kpn2I | TCCGGA | 1 cut(s) | 564 |
| Ksp22I | TGATCA | 1 cut(s) | 1369 |
| LguI | GCTCTTC | 1 cut(s) | 978 |
| LmnI | GCTCC | 5 cut(s) | 280, 440, 1750, 1789, 1917 |
| Lsp1109I | GCAGC | 4 cut(s) | 382, 518, 1648, 1711 |
| LweI | GCATC | 1 cut(s) | 1687 |
| MabI | ACCWGGT | 1 cut(s) | 1909 |
| MaeI | CTAG | 5 cut(s) | 327, 644, 743, 1391, 1763 |
| MaeII | ACGT | 2 cut(s) | 169, 1667 |
| MaeIII | GTNAC | 5 cut(s) | 301, 965, 1015, 1498, 1607 |
| MfeI | CAATTG | 2 cut(s) | 552, 1011 |
| MflI | RGATCY | 4 cut(s) | 490, 654, 1387, 1801 |
| MhlI | GDGCHC | 2 cut(s) | 225, 1042 |
| MlyI | GAGTC | 2 cut(s) | 1184, 1246 |
| MmeI | TCCRAC | 3 cut(s) | 1379, 1767, 1895 |
| MroI | TCCGGA | 1 cut(s) | 564 |
| MspA1I | CMGCKG | 1 cut(s) | 395 |
| MspI | CCGG | 3 cut(s) | 213, 565, 813 |
| MspR9I | CCNGG | 3 cut(s) | 1599, 1806, 1911 |
| MunI | CAATTG | 2 cut(s) | 552, 1011 |
| Mva1269I | GAATGC | 1 cut(s) | 29 |
| MvaI | CCWGG | 3 cut(s) | 1599, 1806, 1911 |
| MvnI | CGCG | 1 cut(s) | 81 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 842, 1454, 1759 |
| NdeI | CATATG | 1 cut(s) | 1813 |
| NlaIV | GGNNCC | 4 cut(s) | 1219, 1791, 1803, 1908 |
| NmuCI | GTSAC | 4 cut(s) | 965, 1015, 1498, 1607 |
| NspI | RCATGY | 6 cut(s) | 324, 1098, 1265, 1298, 1724, 1834 |
| PacI | TTAATTAA | 1 cut(s) | 420 |
| PaeI | GCATGC | 2 cut(s) | 1265, 1724 |
| PagI | TCATGA | 1 cut(s) | 1159 |
| PceI | AGGCCT | 1 cut(s) | 1489 |
| PciI | ACATGT | 2 cut(s) | 1294, 1830 |
| PciSI | GCTCTTC | 1 cut(s) | 978 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 453 |
| PctI | GAATGC | 1 cut(s) | 29 |
| PfeI | GAWTC | 5 cut(s) | 384, 532, 749, 1482, 1493 |
| PkrI | GCNGC | 4 cut(s) | 397, 508, 1663, 1726 |
| PleI | GAGTC | 2 cut(s) | 1184, 1246 |
| PpsI | GAGTC | 2 cut(s) | 1184, 1246 |
| PscI | ACATGT | 2 cut(s) | 1294, 1830 |
| Psp1406I | AACGTT | 1 cut(s) | 1667 |
| Psp6I | CCWGG | 3 cut(s) | 1597, 1804, 1909 |
| PspGI | CCWGG | 3 cut(s) | 1597, 1804, 1909 |
| PspN4I | GGNNCC | 4 cut(s) | 1219, 1791, 1803, 1908 |
| PspPI | GGNCC | 3 cut(s) | 798, 1218, 1846 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 981, 1013 |
| PstI | CTGCAG | 1 cut(s) | 838 |
| PsuI | RGATCY | 4 cut(s) | 490, 654, 1387, 1801 |
| PvuII | CAGCTG | 1 cut(s) | 395 |
| RsaI | GTAC | 7 cut(s) | 296, 312, 725, 885, 999, 1025, 1328 |
| RsaNI | GTAC | 7 cut(s) | 295, 311, 724, 884, 998, 1024, 1327 |
| SapI | GCTCTTC | 1 cut(s) | 978 |
| SatI | GCNGC | 4 cut(s) | 396, 507, 1662, 1725 |
| Sau96I | GGNCC | 3 cut(s) | 798, 1218, 1846 |
| SchI | GAGTC | 2 cut(s) | 1184, 1246 |
| ScrFI | CCNGG | 3 cut(s) | 1599, 1806, 1911 |
| SduI | GDGCHC | 2 cut(s) | 225, 1042 |
| SexAI | ACCWGGT | 1 cut(s) | 1909 |
| SfaNI | GCATC | 1 cut(s) | 1687 |
| SfcI | CTRYAG | 2 cut(s) | 834, 1525 |
| SmlI | CTYRAG | 1 cut(s) | 619 |
| SmoI | CTYRAG | 1 cut(s) | 619 |
| SphI | GCATGC | 2 cut(s) | 1265, 1724 |
| SseBI | AGGCCT | 1 cut(s) | 1489 |
| SsiI | CCGC | 1 cut(s) | 81 |
| SspMI | CTAG | 5 cut(s) | 327, 644, 743, 1391, 1763 |
| StuI | AGGCCT | 1 cut(s) | 1489 |
| StyD4I | CCNGG | 3 cut(s) | 1597, 1804, 1909 |
| StyI | CCWWGG | 1 cut(s) | 1104 |
| TaaI | ACNGT | 4 cut(s) | 301, 463, 635, 919 |
| TaiI | ACGT | 2 cut(s) | 172, 1670 |
| TaqI | TCGA | 4 cut(s) | 447, 728, 1137, 1639 |
| TatI | WGTACW | 6 cut(s) | 294, 310, 723, 997, 1023, 1326 |
| TfiI | GAWTC | 5 cut(s) | 384, 532, 749, 1482, 1493 |
| TscAI | CASTG | 6 cut(s) | 49, 304, 619, 1503, 1722, 1856 |
| TseFI | GTSAC | 4 cut(s) | 965, 1015, 1498, 1607 |
| TseI | GCWGC | 4 cut(s) | 395, 506, 1661, 1724 |
| Tsp45I | GTSAC | 4 cut(s) | 965, 1015, 1498, 1607 |
| TspDTI | ATGAA | 8 cut(s) | 158, 162, 302, 783, 950, 1148, 1660, 1727 |
| TspGWI | ACGGA | 1 cut(s) | 1551 |
| TspRI | CASTG | 6 cut(s) | 49, 304, 619, 1503, 1722, 1856 |
| VneI | GTGCAC | 1 cut(s) | 221 |
| XapI | RAATTY | 6 cut(s) | 161, 251, 357, 538, 771, 957 |
| XbaI | TCTAGA | 1 cut(s) | 742 |
| XceI | RCATGY | 6 cut(s) | 324, 1098, 1265, 1298, 1724, 1834 |
| XmiI | GTMKAC | 1 cut(s) | 630 |
| XspI | CTAG | 5 cut(s) | 327, 644, 743, 1391, 1763 |