Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0012277

Physical Location & Seq

Genomic Coordinates Reverse (-)

3014477 .. 3017379

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG041200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2685 bp

ATGCTTACACGAATCCGAATGAAATCTCTCCTCAATCCCAAAATCTCACTCTCCACTCTCAAATCCATATCCTCCCTTGCCGCCGTTAAAAACCCATCATTTTTCCCCATTGAAAACCCCGAAATTCCCAGTCTTTTTGACCCCTTCCAATTCCTCAATGATTACACAAAATCAACTCACTGCAGTATTACAAACACTAGAATCTTACATGCCCACTTTCTCAGAATCGATTTACTCCCATCCAATGTCGCCATTGCGAACTCTTTACTTGGCTGTTACTGTAGATCTGGTTCCATGGCAGATGCACTCCACCTGTTCGATGTAATTCCTGAGAGAAATGTGATCTCTTGGAATTTGATGGTTTCGGGTTATAACAGGAGCTCGATGTTTGAGAATTCATGGGGAGTGTTCTGCAGGATGCATTGTTCGGGTTTTGAGCCTGATGAGTTTACTTATGGGAGTGTTCTTTCGGCTTGCACTGCCTTGCAAGCTTCTAGTTTGGGTGAGCAGGTTTATTCGCTTGCAACGAAAAATGGGTTCTTTAGTAGTGATTATGTTCGGTCTGGAATGATAGACTTGTTTGCGAAAAGTGGCAGCTTTGAGGATGCTTTGAGGGTGTTTCATGATGTTTCGTGTTGGAATGTTGTGATTTGGAACGGTGTTATCTCTGGGGCTGTGAGAAATGGAGAGAACGGAGTTGCGCTGGACCTTTTTCGACAAATGTGTTGTGGGTTTTTGTTGCCGAATAGCTTTACGTTTTCTAGTGTTTTGACTGCCTGTGCTGCACTTGGTGAAATTGGGATCGGGAGGGAGGTTCAAGGGTGGGTAATTAAGCGTGGTGCAGAAGATGTGTTTGTTGGGACTGCCATTGTAGACTTATATTCCAAATGTGGAAAGATGAATGAAGCTGTCAAGGAATTCTCCCGTATGCCAACACGTAATGTGGTGTCTTGGACTGCCATCATTTCTGGTTTTGTGGGGAAGGACGATTCTATCTCTGGCCTCAAGTTTTTCAGAGAAATGAGAAGAATGGGAGAGGAAATAAATAAGTTTACTATTACTAGCGTACTCACTGCATGTGCTAAACCATCCATGAGTGAAGAGGCAATCCAAATCCATTCACTGATATTAAAATCTGGACTCTATTCAGCTGCAGAAGTTGGATCCGCTTTAATTAATGCGTATTCAAAAATAGGAGCTGTAGATGTATCTGAAATGGTGTTCAGGGAGATAAGAACTTTAAAGGATCTGGGTACATGGGCTGCAATGATATCTTCTTTTGCGCAGAATCAAAATCCTGAAAGCGCAATTGGAGTTTTCCAGAGAATGTTACAGGAAAGTGTGAGACCAGATAAGTTTTCTACTTCTAGTGTCTTGAGTATTATAGACTATTTAGGTGTAGGGAGGCAGATACATAGCTACACTCTTAAAGTTGGGTTGGCCTTTGACGCTTCTGTTGGTAGTTCCCTTTCCACAATGTATTCAAAATGTGACAGTCTAGAGGAATCTTACAAGGCATTTCAGCAAATTCGTGACAAAGACAATGTTTCATGGGCTTCAATGATTGCCGGTTTTTTAGAACATGGCTTTGCAGATCAAGCCCTTCAGTTATATCGAGAGATGCCATGCAAAGAAATAATACCTGATCAGATGACTTTAGCTGCAATTCTAACTGCATGTTCTGCTTCTCGTTCCTTACTGATTGGTAAGGAAATTCATGGTCATGCTCTTCGTGCTGGAGTTGGAAGAGATGTAGTTGTTGGTGGTGCAATTGTGAACATGTACTCAAAATGCAGTGCTCTAGAATTGGCAAGGAAGGTGTTTGATATGCTTCCTCAAAAGGATGAAGTTGCATGCTCTTCACTGGTTTCAGGTTATGCCCAAAATGGGTGCATTGAAGAGGCACTTTTGCTGTTCCATCATATGCTAATGGCTGATTTGACCATTGATTCCTTCACAATTTCATCCATTCTTGGGGTCATTGCACCTTTGAATAACCCAAGTATTGGAACTCAAATGCATGCCCACATCACAAAAATTGGTTTGAATTCAGATGTTTCTGTTGGGAGCTCACTGGTGAGAATGTACTCAAAATGTGGAAGCATTGAAGATTGCCAGAAATCATTTGATCAAATCGAGAACCCTGACTTAATTTGCTGGACAGCTATGATTGCAAGCTATGCTCAGCATGGGAAAGGCGCAGAGGCTTTAAGAGGCTACGAGCTTTTGAAGGAAGAAGGAATCAAACCTGATTCAGTGACTTTTGTTGCAGTTTTATATGCTTGTAGCCATAACGGATTGGTTGACGAAGCTTATTTCTACTTAAATTCAATGGCTACTGATTACGGAATTAGGCCTGGTTATCGTCACTATGCCTGTATGGTTGATGTTCTTGGCCGATCAGGGAGGTTGAAAGAGGCTGAGAGGTTCATTATCAATATGCCTATTGAACCTAGTGGTTTAATATGGGGAACACTGCTTGCTGCTTGTGTGATACACAGAGATGTAGAGCTTGGAAAGTTAACAGCTAAAAAGATTATGGATTTGGAGCCATGTGATGCTAGCACATATGTTTCCCTTTCAAACATGTGTGCAGATTTGGGCCTGTGGGAAGAAGCCGAGCAGATTAGAGACCAGATGAGGGGAAATCGTACGAGGAAGGAACCTGGGTGGAGCTTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

894

Amino Acids

98.28

Weight (kDa)

5.94

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	112 - 159	6.4e-09	PPR repeat family
PPR_2	PF13041	214 - 261	8.7e-09	PPR repeat family
PPR_2	PF13041	313 - 362	1.7e-08	PPR repeat family
PPR_2	PF13041	514 - 560	1.5e-06	PPR repeat family
PPR_2	PF13041	715 - 763	1.2e-08	PPR repeat family
E_motif	PF20431	833 - 894	9.2e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74600
fragaria_vesca	FvH4_5g15030
malus_domestica	MD06G1192600.v1.1 MD14G1199400.v1.1
prunus_persica	Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1
pyrus_communis	pycom06g17070 pycom14g16530
rosa_chinensis	RchiOBHm_Chr7g0181221
rosa_laevigata	RLG00000005205
rosa_multiflora	Rmu_sc0001147.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272190
rosa_rugosa	Rorug06G0439600
rosa_samantha	Rh7AG041400 Rh7BG040700 Rh7CG042900 Rh7DG041200
rosa_wichuraiana	Rw7G003410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
Acc16I	TGCGCA	1 cut(s)	1284
Acc36I	ACCTGC	1 cut(s)	499
AccB7I	CCANNNNNTGG	1 cut(s)	2006
AccI	GTMKAC	1 cut(s)	873
AciI	CCGC	2 cut(s)	81, 1167
AclWI	GGATC	4 cut(s)	809, 1158, 1171, 1254
AcoI	YGGCCR	1 cut(s)	2395
AcsI	RAATTY	8 cut(s)	123, 352, 394, 917, 1527, 1713, 2047, 2326
AcuI	CTGAAG	1 cut(s)	1589
AdeI	CACNNNGTG	1 cut(s)	791
AfaI	GTAC	5 cut(s)	1068, 1255, 1784, 2087, 2653
AfiI	CCNNNNNNNGG	4 cut(s)	1887, 1974, 2006, 2641
AflIII	ACRYGT	3 cut(s)	935, 1779, 2586
AjnI	CCWGG	2 cut(s)	2356, 2665
AjuI	GAANNNNNNNTTGG	2 cut(s)	1293, 1325
AloI	GAACNNNNNNTCC	2 cut(s)	409, 441
Alw21I	GWGCWC	3 cut(s)	383, 1801, 2072
Alw26I	GTCTC	2 cut(s)	1339, 2625
AlwI	GGATC	4 cut(s)	809, 1158, 1171, 1254
AoxI	GGCC	5 cut(s)	1000, 1440, 2354, 2395, 2602
ApeKI	GCWGC	6 cut(s)	594, 782, 1151, 1262, 1661, 2483
ApoI	RAATTY	8 cut(s)	123, 352, 394, 917, 1527, 1713, 2047, 2326
AseI	ATTAAT	1 cut(s)	1176
AspLEI	GCGC	4 cut(s)	703, 1285, 1307, 2201
AspS9I	GGNCC	2 cut(s)	706, 2602
AsuHPI	GGTGA	3 cut(s)	515, 803, 2089
AsuNHI	GCTAGC	1 cut(s)	2561
AvaII	GGWCC	1 cut(s)	706
BamHI	GGATCC	1 cut(s)	1163
BanII	GRGCYC	2 cut(s)	383, 2072
Bbv12I	GWGCWC	3 cut(s)	383, 1801, 2072
BbvI	GCAGC	6 cut(s)	606, 769, 1138, 1249, 1648, 2470
BccI	CCATC	6 cut(s)	103, 247, 352, 968, 1096, 1926
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	2358, 2667
BclI	TGATCA	2 cut(s)	1645, 2128
BcoDI	GTCTC	2 cut(s)	1339, 2625
BfaI	CTAG	9 cut(s)	198, 495, 762, 1062, 1368, 1499, 1802, 2454, 2562
BfmI	CTRYAG	5 cut(s)	181, 280, 412, 1152, 1200
BfuAI	ACCTGC	1 cut(s)	499
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	7 cut(s)	81, 595, 783, 1152, 1263, 1662, 2484
BlpI	GCTNAGC	1 cut(s)	2184
BlsI	GCNGC	7 cut(s)	82, 596, 784, 1153, 1264, 1663, 2485
Bme1390I	CCNGG	2 cut(s)	2358, 2667
Bme18I	GGWCC	1 cut(s)	706
BmgT120I	GGNCC	2 cut(s)	706, 2602
BmiI	GGNNCC	4 cut(s)	292, 1165, 2550, 2664
BmrFI	CCNGG	2 cut(s)	2358, 2667
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	5 cut(s)	292, 408, 595, 1611, 2548
BmtI	GCTAGC	1 cut(s)	2565
BmuI	ACTGGG	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	1758
Bpu1102I	GCTNAGC	1 cut(s)	2184
BpuEI	CTTGAG	2 cut(s)	989, 1396
Bsa29I	ATCGAT	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	938
BsaI	GGTCTC	2 cut(s)	1339, 2625
BsaJI	CCNNGG	2 cut(s)	294, 2666
Bsc4I	CCNNNNNNNGG	4 cut(s)	1887, 1974, 2006, 2641
Bse118I	RCCGGY	1 cut(s)	1568
Bse1I	ACTGG	3 cut(s)	129, 1869, 2079
Bse3DI	GCAATG	3 cut(s)	252, 1272, 1980
BseBI	CCWGG	2 cut(s)	2358, 2667
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	294, 2666
BseGI	GGATG	6 cut(s)	239, 423, 610, 1088, 1849, 1964
BseLI	CCNNNNNNNGG	4 cut(s)	1887, 1974, 2006, 2641
BseMI	GCAATG	3 cut(s)	252, 1272, 1980
BseMII	CTCAG	4 cut(s)	235, 321, 2198, 2412
BseNI	ACTGG	3 cut(s)	129, 1869, 2079
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	6 cut(s)	606, 769, 1138, 1249, 1648, 2470
BsgI	GTGCAG	3 cut(s)	768, 861, 2613
BshFI	GGCC	5 cut(s)	1002, 1442, 2356, 2397, 2604
BshVI	ATCGAT	1 cut(s)	228
BsiHKAI	GWGCWC	3 cut(s)	383, 1801, 2072
BsiSI	CCGG	1 cut(s)	1569
BsiWI	CGTACG	1 cut(s)	2651
BslFI	GGGAC	1 cut(s)	874
BslI	CCNNNNNNNGG	4 cut(s)	1887, 1974, 2006, 2641
BsmAI	GTCTC	2 cut(s)	1339, 2625
BsmFI	GGGAC	1 cut(s)	874
BsnI	GGCC	5 cut(s)	1002, 1442, 2356, 2397, 2604
Bso31I	GGTCTC	2 cut(s)	1339, 2625
Bsp1286I	GDGCHC	3 cut(s)	383, 1801, 2072
Bsp143I	GATC	9 cut(s)	284, 342, 801, 1163, 1246, 1594, 1645, 2128, 2399
Bsp1720I	GCTNAGC	1 cut(s)	2184
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	2 cut(s)	81, 1167
BspANI	GGCC	5 cut(s)	1002, 1442, 2356, 2397, 2604
BspCNI	CTCAG	4 cut(s)	234, 322, 2197, 2413
BspDI	ATCGAT	1 cut(s)	228
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	4 cut(s)	292, 1165, 2550, 2664
BspMAI	CTGCAG	3 cut(s)	185, 416, 1156
BspMI	ACCTGC	1 cut(s)	499
BspOI	GCTAGC	1 cut(s)	2565
BspPI	GGATC	4 cut(s)	809, 1158, 1171, 1254
BspQI	GCTCTTC	2 cut(s)	1734, 1864
BspTNI	GGTCTC	2 cut(s)	1339, 2625
BsrDI	GCAATG	3 cut(s)	252, 1272, 1980
BsrFI	RCCGGY	1 cut(s)	1568
BsrI	ACTGG	3 cut(s)	129, 1869, 2079
BssAI	RCCGGY	1 cut(s)	1568
BssECI	CCNNGG	2 cut(s)	294, 2666
BssMI	GATC	9 cut(s)	284, 342, 801, 1163, 1246, 1594, 1645, 2128, 2399
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	2358, 2667
Bst4CI	ACNGT	3 cut(s)	281, 659, 1496
Bst6I	CTCTTC	5 cut(s)	1095, 1734, 1741, 1864, 1893
BstAPI	GCANNNNNTGC	2 cut(s)	1682, 2180
BstBAI	YACGTR	1 cut(s)	938
BstC8I	GCNNGC	8 cut(s)	475, 489, 522, 1855, 2022, 2176, 2481, 2563
BstDEI	CTNAG	5 cut(s)	221, 330, 2184, 2421, 2677
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	6 cut(s)	239, 423, 610, 1088, 1849, 1964
BstHHI	GCGC	4 cut(s)	703, 1285, 1307, 2201
BstKTI	GATC	9 cut(s)	287, 345, 804, 1166, 1249, 1597, 1648, 2131, 2402
BstMAI	GTCTC	2 cut(s)	1339, 2625
BstMBI	GATC	9 cut(s)	284, 342, 801, 1163, 1246, 1594, 1645, 2128, 2399
BstMWI	GCNNNNNNNGC	9 cut(s)	479, 488, 782, 1448, 1598, 1682, 1733, 2171, 2180
BstNI	CCWGG	2 cut(s)	2358, 2667
BstNSI	RCATGY	7 cut(s)	212, 1080, 1680, 1783, 1857, 2024, 2590
BstSCI	CCNGG	2 cut(s)	2356, 2665
BstSFI	CTRYAG	5 cut(s)	181, 280, 412, 1152, 1200
BstV1I	GCAGC	6 cut(s)	606, 769, 1138, 1249, 1648, 2470
BstX2I	RGATCY	3 cut(s)	284, 1163, 1246
BstYI	RGATCY	3 cut(s)	284, 1163, 1246
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	5 cut(s)	1002, 1442, 2356, 2397, 2604
BsuTUI	ATCGAT	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	6 cut(s)	239, 423, 610, 1088, 1849, 1964
BtsI	GCAGTG	5 cut(s)	178, 477, 1071, 1801, 2474
BtsIMutI	CAGTG	9 cut(s)	178, 477, 1071, 1121, 1801, 1862, 2072, 2262, 2474
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	8 cut(s)	475, 489, 522, 1855, 2022, 2176, 2481, 2563
CciI	TCATGA	1 cut(s)	622
CfoI	GCGC	4 cut(s)	703, 1285, 1307, 2201
Cfr10I	RCCGGY	1 cut(s)	1568
Cfr13I	GGNCC	2 cut(s)	706, 2602
ClaI	ATCGAT	1 cut(s)	228
CseI	GACGC	1 cut(s)	1457
Csp6I	GTAC	5 cut(s)	1067, 1254, 1783, 2086, 2652
CviQI	GTAC	5 cut(s)	1067, 1254, 1783, 2086, 2652
DdeI	CTNAG	5 cut(s)	221, 330, 2184, 2421, 2677
DpnI	GATC	9 cut(s)	286, 344, 803, 1165, 1248, 1596, 1647, 2130, 2401
DpnII	GATC	9 cut(s)	284, 342, 801, 1163, 1246, 1594, 1645, 2128, 2399
DraI	TTTAAA	1 cut(s)	1242
DraIII	CACNNNGTG	1 cut(s)	791
EaeI	YGGCCR	1 cut(s)	2395
Eam1104I	CTCTTC	5 cut(s)	1095, 1734, 1741, 1864, 1893
EarI	CTCTTC	5 cut(s)	1095, 1734, 1741, 1864, 1893
Ecl136II	GAGCTC	2 cut(s)	381, 2070
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	2356
Eco24I	GRGCYC	2 cut(s)	383, 2072
Eco31I	GGTCTC	2 cut(s)	1339, 2625
Eco32I	GATATC	1 cut(s)	1272
Eco47I	GGWCC	1 cut(s)	706
Eco53kI	GAGCTC	2 cut(s)	381, 2070
Eco57I	CTGAAG	1 cut(s)	1589
EcoICRI	GAGCTC	2 cut(s)	381, 2070
EcoRI	GAATTC	3 cut(s)	394, 917, 2047
EcoRII	CCWGG	2 cut(s)	2356, 2665
EcoRV	GATATC	1 cut(s)	1272
EcoT14I	CCWWGG	1 cut(s)	294
EcoT22I	ATGCAT	2 cut(s)	423, 2022
EcoT38I	GRGCYC	2 cut(s)	383, 2072
ErhI	CCWWGG	1 cut(s)	294
FalI	AAGNNNNNCTT	2 cut(s)	1890, 1922
FaqI	GGGAC	1 cut(s)	874
FauNDI	CATATG	2 cut(s)	1923, 2569
FbaI	TGATCA	2 cut(s)	1645, 2128
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	7 cut(s)	81, 595, 783, 1152, 1263, 1662, 2484
FokI	GGATG	6 cut(s)	226, 430, 617, 1075, 1856, 1951
FriOI	GRGCYC	2 cut(s)	383, 2072
Fsp4HI	GCNGC	7 cut(s)	81, 595, 783, 1152, 1263, 1662, 2484
FspBI	CTAG	9 cut(s)	198, 495, 762, 1062, 1368, 1499, 1802, 2454, 2562
FspI	TGCGCA	1 cut(s)	1284
GlaI	GCGC	4 cut(s)	702, 1284, 1306, 2200
GluI	GCNGC	7 cut(s)	81, 595, 783, 1152, 1263, 1662, 2484
GsuI	CTGGAG	1 cut(s)	1758
HaeIII	GGCC	5 cut(s)	1002, 1442, 2356, 2397, 2604
HapII	CCGG	1 cut(s)	1569
HgaI	GACGC	1 cut(s)	1457
HhaI	GCGC	4 cut(s)	703, 1285, 1307, 2201
Hin6I	GCGC	4 cut(s)	701, 1283, 1305, 2199
HinP1I	GCGC	4 cut(s)	701, 1283, 1305, 2199
HincII	GTYRAC	2 cut(s)	2305, 2523
HindII	GTYRAC	2 cut(s)	2305, 2523
HindIII	AAGCTT	2 cut(s)	489, 2310
HpaI	GTTAAC	1 cut(s)	2523
HpaII	CCGG	1 cut(s)	1569
HphI	GGTGA	3 cut(s)	515, 803, 2089
Hpy166II	GTNNAC	6 cut(s)	450, 874, 1053, 1777, 2305, 2523
Hpy188I	TCNGA	6 cut(s)	17, 224, 1016, 1213, 1650, 2053
Hpy8I	GTNNAC	6 cut(s)	450, 874, 1053, 1777, 2305, 2523
HpyAV	CCTTC	8 cut(s)	154, 976, 1613, 1810, 1963, 2224, 2231, 2653
HpyCH4III	ACNGT	3 cut(s)	281, 659, 1496
HpyCH4IV	ACGT	2 cut(s)	755, 937
HpyF10VI	GCNNNNNNNGC	9 cut(s)	479, 488, 782, 1448, 1598, 1682, 1733, 2171, 2180
HpyF3I	CTNAG	5 cut(s)	221, 330, 2184, 2421, 2677
HpySE526I	ACGT	2 cut(s)	755, 937
HspAI	GCGC	4 cut(s)	701, 1283, 1305, 2199
Ksp22I	TGATCA	2 cut(s)	1645, 2128
KspAI	GTTAAC	1 cut(s)	2523
Kzo9I	GATC	9 cut(s)	284, 342, 801, 1163, 1246, 1594, 1645, 2128, 2399
LguI	GCTCTTC	2 cut(s)	1734, 1864
LmnI	GCTCC	5 cut(s)	378, 1196, 2067, 2548, 2673
Lsp1109I	GCAGC	6 cut(s)	606, 769, 1138, 1249, 1648, 2470
LweI	GCATC	5 cut(s)	292, 408, 595, 1611, 2548
MaeI	CTAG	9 cut(s)	198, 495, 762, 1062, 1368, 1499, 1802, 2454, 2562
MaeII	ACGT	2 cut(s)	755, 937
MaeIII	GTNAC	6 cut(s)	275, 1329, 1490, 1532, 2257, 2366
MalI	GATC	9 cut(s)	286, 344, 803, 1165, 1248, 1596, 1647, 2130, 2401
MboI	GATC	9 cut(s)	284, 342, 801, 1163, 1246, 1594, 1645, 2128, 2399
MfeI	CAATTG	2 cut(s)	1308, 1770
MflI	RGATCY	3 cut(s)	284, 1163, 1246
MhlI	GDGCHC	3 cut(s)	383, 1801, 2072
MlyI	GAGTC	1 cut(s)	1134
MmeI	TCCRAC	3 cut(s)	617, 1141, 1723
Mph1103I	ATGCAT	2 cut(s)	423, 2022
MslI	CAYNNNNRTG	2 cut(s)	1722, 2502
MspA1I	CMGCKG	1 cut(s)	1151
MspI	CCGG	1 cut(s)	1569
MspR9I	CCNGG	2 cut(s)	2358, 2667
MunI	CAATTG	2 cut(s)	1308, 1770
MvaI	CCWGG	2 cut(s)	2358, 2667
MwoI	GCNNNNNNNGC	9 cut(s)	479, 488, 782, 1448, 1598, 1682, 1733, 2171, 2180
NcoI	CCATGG	1 cut(s)	294
NdeI	CATATG	2 cut(s)	1923, 2569
NdeII	GATC	9 cut(s)	284, 342, 801, 1163, 1246, 1594, 1645, 2128, 2399
NheI	GCTAGC	1 cut(s)	2561
NlaIV	GGNNCC	4 cut(s)	292, 1165, 2550, 2664
NmeAIII	GCCGAG	1 cut(s)	2644
NmuCI	GTSAC	4 cut(s)	1490, 1532, 2257, 2366
NsbI	TGCGCA	1 cut(s)	1284
NsiI	ATGCAT	2 cut(s)	423, 2022
NspI	RCATGY	7 cut(s)	212, 1080, 1680, 1783, 1857, 2024, 2590
PacI	TTAATTAA	1 cut(s)	1176
PaeI	GCATGC	2 cut(s)	1857, 2024
PagI	TCATGA	1 cut(s)	622
PceI	AGGCCT	1 cut(s)	2356
PciI	ACATGT	2 cut(s)	1779, 2586
PciSI	GCTCTTC	2 cut(s)	1734, 1864
PcsI	WCGNNNNNNNCGW	1 cut(s)	524
PfeI	GAWTC	9 cut(s)	12, 201, 225, 989, 1288, 1505, 1949, 2241, 2252
Pfl23II	CGTACG	1 cut(s)	2651
PflMI	CCANNNNNTGG	1 cut(s)	2006
PkrI	GCNGC	7 cut(s)	82, 596, 784, 1153, 1264, 1663, 2485
PleI	GAGTC	1 cut(s)	1134
PpsI	GAGTC	1 cut(s)	1134
Ppu21I	YACGTR	1 cut(s)	938
PscI	ACATGT	2 cut(s)	1779, 2586
PshBI	ATTAAT	1 cut(s)	1176
PsiI	TTATAA	1 cut(s)	372
Psp124BI	GAGCTC	2 cut(s)	383, 2072
Psp6I	CCWGG	2 cut(s)	2356, 2665
PspGI	CCWGG	2 cut(s)	2356, 2665
PspLI	CGTACG	1 cut(s)	2651
PspN4I	GGNNCC	4 cut(s)	292, 1165, 2550, 2664
PspPI	GGNCC	2 cut(s)	706, 2602
PsrI	GAACNNNNNNTAC	2 cut(s)	274, 306
PstI	CTGCAG	3 cut(s)	185, 416, 1156
PsuI	RGATCY	3 cut(s)	284, 1163, 1246
PvuII	CAGCTG	1 cut(s)	1151
RsaI	GTAC	5 cut(s)	1068, 1255, 1784, 2087, 2653
RsaNI	GTAC	5 cut(s)	1067, 1254, 1783, 2086, 2652
RseI	CAYNNNNRTG	2 cut(s)	1722, 2502
SacI	GAGCTC	2 cut(s)	383, 2072
SapI	GCTCTTC	2 cut(s)	1734, 1864
SatI	GCNGC	7 cut(s)	81, 595, 783, 1152, 1263, 1662, 2484
Sau3AI	GATC	9 cut(s)	284, 342, 801, 1163, 1246, 1594, 1645, 2128, 2399
Sau96I	GGNCC	2 cut(s)	706, 2602
SchI	GAGTC	1 cut(s)	1134
ScrFI	CCNGG	2 cut(s)	2358, 2667
SduI	GDGCHC	3 cut(s)	383, 1801, 2072
SfaNI	GCATC	5 cut(s)	292, 408, 595, 1611, 2548
SfcI	CTRYAG	5 cut(s)	181, 280, 412, 1152, 1200
SinI	GGWCC	1 cut(s)	706
SmiMI	CAYNNNNRTG	2 cut(s)	1722, 2502
SmlI	CTYRAG	2 cut(s)	1004, 1375
SmoI	CTYRAG	2 cut(s)	1004, 1375
SphI	GCATGC	2 cut(s)	1857, 2024
SseBI	AGGCCT	1 cut(s)	2356
SsiI	CCGC	2 cut(s)	81, 1167
SspMI	CTAG	9 cut(s)	198, 495, 762, 1062, 1368, 1499, 1802, 2454, 2562
SstI	GAGCTC	2 cut(s)	383, 2072
StuI	AGGCCT	1 cut(s)	2356
StyD4I	CCNGG	2 cut(s)	2356, 2665
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	3 cut(s)	281, 659, 1496
TaiI	ACGT	2 cut(s)	758, 940
TaqI	TCGA	6 cut(s)	228, 318, 383, 715, 1615, 2136
TaqII	GACCGA	1 cut(s)	549
TatI	WGTACW	2 cut(s)	1782, 2085
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	9 cut(s)	12, 201, 225, 989, 1288, 1505, 1949, 2241, 2252
TscAI	CASTG	9 cut(s)	185, 484, 1078, 1128, 1801, 1869, 2079, 2262, 2481
TseFI	GTSAC	4 cut(s)	1490, 1532, 2257, 2366
TseI	GCWGC	6 cut(s)	594, 782, 1151, 1262, 1661, 2483
Tsp45I	GTSAC	4 cut(s)	1490, 1532, 2257, 2366
TspGWI	ACGGA	3 cut(s)	708, 2310, 2361
TspRI	CASTG	9 cut(s)	185, 484, 1078, 1128, 1801, 1869, 2079, 2262, 2481
Van91I	CCANNNNNTGG	1 cut(s)	2006
VpaK11BI	GGWCC	1 cut(s)	706
VspI	ATTAAT	1 cut(s)	1176
XapI	RAATTY	8 cut(s)	123, 352, 394, 917, 1527, 1713, 2047, 2326
XbaI	TCTAGA	2 cut(s)	1498, 1801
XceI	RCATGY	7 cut(s)	212, 1080, 1680, 1783, 1857, 2024, 2590
XmiI	GTMKAC	1 cut(s)	873
XspI	CTAG	9 cut(s)	198, 495, 762, 1062, 1368, 1499, 1802, 2454, 2562
Zsp2I	ATGCAT	2 cut(s)	423, 2022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.