Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G74600 |
| fragaria_vesca | FvH4_5g15030 |
| malus_domestica | MD06G1192600.v1.1 MD14G1199400.v1.1 |
| prunus_persica | Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1 |
| pyrus_communis | pycom06g17070 pycom14g16530 |
| rosa_chinensis | RchiOBHm_Chr7g0181221 |
| rosa_laevigata | RLG00000005205 |
| rosa_multiflora | Rmu_sc0001147.1_g000014 |
| rosa_roxburghii | Rroxscaffold_3G00272190 |
| rosa_rugosa | Rorug06G0439600 |
| rosa_samantha | Rh7AG041400 Rh7BG040700 Rh7CG042900 Rh7DG041200 |
| rosa_wichuraiana | Rw7G003410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 366 |
| Acc36I | ACCTGC | 1 cut(s) | 493 |
| AccI | GTMKAC | 2 cut(s) | 1060, 1380 |
| AccIII | TCCGGA | 1 cut(s) | 1292 |
| AciI | CCGC | 3 cut(s) | 768, 1146, 1925 |
| AclWI | GGATC | 1 cut(s) | 1248 |
| AcuI | CTGAAG | 2 cut(s) | 1113, 2633 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 494, 937, 1696, 1878, 2602 |
| AhlI | ACTAGT | 1 cut(s) | 1055 |
| AjnI | CCWGG | 2 cut(s) | 2347, 2656 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 780, 812 |
| Alw21I | GWGCWC | 1 cut(s) | 1792 |
| Alw26I | GTCTC | 4 cut(s) | 1333, 1393, 1441, 2392 |
| AlwI | GGATC | 1 cut(s) | 1248 |
| Aor13HI | TCCGGA | 1 cut(s) | 1292 |
| AoxI | GGCC | 3 cut(s) | 1548, 1968, 2593 |
| ApeKI | GCWGC | 6 cut(s) | 692, 1256, 2106, 2411, 2474, 2516 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 109, 141 |
| AseI | ATTAAT | 1 cut(s) | 1170 |
| AspLEI | GCGC | 1 cut(s) | 2192 |
| AspS9I | GGNCC | 2 cut(s) | 1548, 1968 |
| AsuC2I | CCSGG | 1 cut(s) | 2554 |
| AsuHPI | GGTGA | 1 cut(s) | 832 |
| BanII | GRGCYC | 1 cut(s) | 435 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1617, 1649 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| Bbv12I | GWGCWC | 1 cut(s) | 1792 |
| BbvI | GCAGC | 6 cut(s) | 679, 1243, 2093, 2398, 2461, 2528 |
| BccI | CCATC | 5 cut(s) | 97, 962, 1204, 1219, 1915 |
| BceAI | ACGGC | 2 cut(s) | 59, 1683 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 241, 275, 701, 735 |
| BciT130I | CCWGG | 2 cut(s) | 2349, 2658 |
| BciVI | GTATCC | 1 cut(s) | 73 |
| BcnI | CCSGG | 1 cut(s) | 2554 |
| BcoDI | GTCTC | 4 cut(s) | 1333, 1393, 1441, 2392 |
| BcuI | ACTAGT | 1 cut(s) | 1055 |
| BfaI | CTAG | 6 cut(s) | 183, 756, 1056, 1394, 1493, 2342 |
| BfmI | CTRYAG | 2 cut(s) | 406, 1691 |
| BfuAI | ACCTGC | 1 cut(s) | 493 |
| BfuI | GTATCC | 1 cut(s) | 73 |
| BisI | GCNGC | 7 cut(s) | 693, 1146, 1257, 2107, 2412, 2475, 2517 |
| BlsI | GCNGC | 7 cut(s) | 694, 1147, 1258, 2108, 2413, 2476, 2518 |
| BmcAI | AGTACT | 1 cut(s) | 457 |
| Bme1390I | CCNGG | 3 cut(s) | 2349, 2554, 2658 |
| BmgT120I | GGNCC | 2 cut(s) | 1548, 1968 |
| BmiI | GGNNCC | 2 cut(s) | 1969, 2655 |
| BmrFI | CCNGG | 3 cut(s) | 2349, 2554, 2658 |
| BmrI | ACTGGG | 2 cut(s) | 96, 117 |
| BmsI | GCATC | 5 cut(s) | 286, 402, 589, 2437, 2539 |
| BmuI | ACTGGG | 2 cut(s) | 96, 117 |
| BoxI | GACNNNNGTC | 1 cut(s) | 117 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpmI | CTGGAG | 1 cut(s) | 684 |
| BpuEI | CTTGAG | 1 cut(s) | 1390 |
| BpuMI | CCSGG | 1 cut(s) | 2554 |
| BsaAI | YACGTR | 1 cut(s) | 920 |
| BsaI | GGTCTC | 2 cut(s) | 1333, 1441 |
| BsaJI | CCNNGG | 4 cut(s) | 288, 1086, 1854, 2383 |
| BsaWI | WCCGGW | 3 cut(s) | 1292, 1562, 2443 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 359, 389 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 494, 937, 1696, 1878, 2602 |
| Bse1I | ACTGG | 4 cut(s) | 102, 123, 1362, 2596 |
| Bse3DI | GCAATG | 2 cut(s) | 246, 1971 |
| BseAI | TCCGGA | 1 cut(s) | 1292 |
| BseBI | CCWGG | 2 cut(s) | 2349, 2658 |
| BseDI | CCNNGG | 4 cut(s) | 288, 1086, 1854, 2383 |
| BseGI | GGATG | 4 cut(s) | 417, 1082, 1840, 2452 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 494, 937, 1696, 1878, 2602 |
| BseMI | GCAATG | 2 cut(s) | 246, 1971 |
| BseMII | CTCAG | 2 cut(s) | 1197, 1292 |
| BseNI | ACTGG | 4 cut(s) | 102, 123, 1362, 2596 |
| BseXI | GCAGC | 6 cut(s) | 679, 1243, 2093, 2398, 2461, 2528 |
| BseYI | CCCAGC | 1 cut(s) | 2503 |
| BsgI | GTGCAG | 5 cut(s) | 762, 855, 1605, 2397, 2604 |
| BshFI | GGCC | 3 cut(s) | 1550, 1970, 2595 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1792 |
| BsiSI | CCGG | 4 cut(s) | 1293, 1563, 2444, 2553 |
| BslFI | GGGAC | 4 cut(s) | 105, 868, 2014, 2569 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 494, 937, 1696, 1878, 2602 |
| BsmAI | GTCTC | 4 cut(s) | 1333, 1393, 1441, 2392 |
| BsmFI | GGGAC | 4 cut(s) | 105, 868, 2014, 2569 |
| BsmI | GAATGC | 1 cut(s) | 655 |
| BsnI | GGCC | 3 cut(s) | 1550, 1970, 2595 |
| Bso31I | GGTCTC | 2 cut(s) | 1333, 1441 |
| Bsp1286I | GDGCHC | 2 cut(s) | 435, 1792 |
| Bsp13I | TCCGGA | 1 cut(s) | 1292 |
| Bsp143I | GATC | 6 cut(s) | 325, 1198, 1240, 1588, 2377, 2390 |
| Bsp19I | CCATGG | 2 cut(s) | 288, 1086 |
| BspACI | CCGC | 3 cut(s) | 768, 1146, 1925 |
| BspANI | GGCC | 3 cut(s) | 1550, 1970, 2595 |
| BspCNI | CTCAG | 2 cut(s) | 1198, 1291 |
| BspEI | TCCGGA | 1 cut(s) | 1292 |
| BspLI | GGNNCC | 2 cut(s) | 1969, 2655 |
| BspMI | ACCTGC | 1 cut(s) | 493 |
| BspPI | GGATC | 1 cut(s) | 1248 |
| BspQI | GCTCTTC | 1 cut(s) | 1855 |
| BspTNI | GGTCTC | 2 cut(s) | 1333, 1441 |
| BsrDI | GCAATG | 2 cut(s) | 246, 1971 |
| BsrI | ACTGG | 4 cut(s) | 102, 123, 1362, 2596 |
| BssECI | CCNNGG | 4 cut(s) | 288, 1086, 1854, 2383 |
| BssMI | GATC | 6 cut(s) | 325, 1198, 1240, 1588, 2377, 2390 |
| BssNAI | GTATAC | 1 cut(s) | 1061 |
| BssT1I | CCWWGG | 4 cut(s) | 288, 1086, 1854, 2383 |
| Bst1107I | GTATAC | 1 cut(s) | 1061 |
| Bst2UI | CCWGG | 2 cut(s) | 2349, 2658 |
| Bst4CI | ACNGT | 7 cut(s) | 174, 275, 334, 1051, 1385, 1810, 2418 |
| Bst6I | CTCTTC | 4 cut(s) | 424, 1089, 1855, 1884 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1676 |
| BstBAI | YACGTR | 1 cut(s) | 920 |
| BstC8I | GCNNGC | 9 cut(s) | 72, 469, 483, 772, 1846, 2013, 2368, 2472, 2514 |
| BstDEI | CTNAG | 5 cut(s) | 215, 1206, 1278, 1991, 2668 |
| BstDSI | CCRYGG | 2 cut(s) | 288, 1086 |
| BstF5I | GGATG | 4 cut(s) | 417, 1082, 1840, 2452 |
| BstHHI | GCGC | 1 cut(s) | 2192 |
| BstKTI | GATC | 6 cut(s) | 328, 1201, 1243, 1591, 2380, 2393 |
| BstMAI | GTCTC | 4 cut(s) | 1333, 1393, 1441, 2392 |
| BstMBI | GATC | 6 cut(s) | 325, 1198, 1240, 1588, 2377, 2390 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 473, 482, 776, 1001, 1097, 1592, 1676, 2204, 2509 |
| BstNI | CCWGG | 2 cut(s) | 2349, 2658 |
| BstNSI | RCATGY | 4 cut(s) | 1074, 1674, 1848, 2015 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 117 |
| BstSCI | CCNGG | 3 cut(s) | 2347, 2552, 2656 |
| BstSFI | CTRYAG | 2 cut(s) | 406, 1691 |
| BstV1I | GCAGC | 6 cut(s) | 679, 1243, 2093, 2398, 2461, 2528 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BstX2I | RGATCY | 1 cut(s) | 1240 |
| BstYI | RGATCY | 1 cut(s) | 1240 |
| BstZ17I | GTATAC | 1 cut(s) | 1061 |
| BsuI | GTATCC | 1 cut(s) | 73 |
| BsuRI | GGCC | 3 cut(s) | 1550, 1970, 2595 |
| BtgI | CCRYGG | 2 cut(s) | 288, 1086 |
| BtgZI | GCGATG | 1 cut(s) | 1274 |
| BtsCI | GGATG | 4 cut(s) | 417, 1082, 1840, 2452 |
| BtsI | GCAGTG | 4 cut(s) | 471, 675, 1792, 2465 |
| BveI | ACCTGC | 1 cut(s) | 493 |
| Cac8I | GCNNGC | 9 cut(s) | 72, 469, 483, 772, 1846, 2013, 2368, 2472, 2514 |
| CfoI | GCGC | 1 cut(s) | 2192 |
| Cfr13I | GGNCC | 2 cut(s) | 1548, 1968 |
| CsiI | ACCWGGT | 1 cut(s) | 2656 |
| DdeI | CTNAG | 5 cut(s) | 215, 1206, 1278, 1991, 2668 |
| DpnI | GATC | 6 cut(s) | 327, 1200, 1242, 1590, 2379, 2392 |
| DpnII | GATC | 6 cut(s) | 325, 1198, 1240, 1588, 2377, 2390 |
| DraI | TTTAAA | 2 cut(s) | 1389, 1983 |
| Eam1104I | CTCTTC | 4 cut(s) | 424, 1089, 1855, 1884 |
| EarI | CTCTTC | 4 cut(s) | 424, 1089, 1855, 1884 |
| EciI | GGCGGA | 1 cut(s) | 1940 |
| Eco130I | CCWWGG | 4 cut(s) | 288, 1086, 1854, 2383 |
| Eco24I | GRGCYC | 1 cut(s) | 435 |
| Eco31I | GGTCTC | 2 cut(s) | 1333, 1441 |
| Eco32I | GATATC | 2 cut(s) | 357, 1266 |
| Eco57I | CTGAAG | 2 cut(s) | 1113, 2633 |
| EcoRI | GAATTC | 2 cut(s) | 4, 253 |
| EcoRII | CCWGG | 2 cut(s) | 2347, 2656 |
| EcoRV | GATATC | 2 cut(s) | 357, 1266 |
| EcoT14I | CCWWGG | 4 cut(s) | 288, 1086, 1854, 2383 |
| EcoT38I | GRGCYC | 1 cut(s) | 435 |
| ErhI | CCWWGG | 4 cut(s) | 288, 1086, 1854, 2383 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1734, 1766 |
| FaqI | GGGAC | 4 cut(s) | 105, 868, 2014, 2569 |
| FblI | GTMKAC | 2 cut(s) | 1060, 1380 |
| Fnu4HI | GCNGC | 7 cut(s) | 693, 1146, 1257, 2107, 2412, 2475, 2517 |
| FokI | GGATG | 4 cut(s) | 424, 1069, 1847, 2459 |
| FriOI | GRGCYC | 1 cut(s) | 435 |
| Fsp4HI | GCNGC | 7 cut(s) | 693, 1146, 1257, 2107, 2412, 2475, 2517 |
| FspBI | CTAG | 6 cut(s) | 183, 756, 1056, 1394, 1493, 2342 |
| GlaI | GCGC | 1 cut(s) | 2191 |
| GluI | GCNGC | 7 cut(s) | 693, 1146, 1257, 2107, 2412, 2475, 2517 |
| GsaI | CCCAGC | 1 cut(s) | 2507 |
| GsuI | CTGGAG | 1 cut(s) | 684 |
| HaeIII | GGCC | 3 cut(s) | 1550, 1970, 2595 |
| HapII | CCGG | 4 cut(s) | 1293, 1563, 2444, 2553 |
| HhaI | GCGC | 1 cut(s) | 2192 |
| Hin6I | GCGC | 1 cut(s) | 2190 |
| HinP1I | GCGC | 1 cut(s) | 2190 |
| HincII | GTYRAC | 1 cut(s) | 2329 |
| HindII | GTYRAC | 1 cut(s) | 2329 |
| HindIII | AAGCTT | 2 cut(s) | 1002, 2301 |
| HpaI | GTTAAC | 1 cut(s) | 2329 |
| HpaII | CCGG | 4 cut(s) | 1293, 1563, 2444, 2553 |
| HphI | GGTGA | 1 cut(s) | 832 |
| Hpy166II | GTNNAC | 8 cut(s) | 177, 444, 1047, 1061, 1381, 2063, 2329, 2488 |
| Hpy188III | TCNNGA | 9 cut(s) | 168, 663, 907, 1293, 1315, 1369, 1493, 1526, 2611 |
| Hpy8I | GTNNAC | 8 cut(s) | 177, 444, 1047, 1061, 1381, 2063, 2329, 2488 |
| HpyAV | CCTTC | 8 cut(s) | 55, 796, 1290, 1322, 1607, 1733, 1954, 2644 |
| HpyCH4III | ACNGT | 7 cut(s) | 174, 275, 334, 1051, 1385, 1810, 2418 |
| HpyCH4IV | ACGT | 2 cut(s) | 829, 919 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 473, 482, 776, 1001, 1097, 1592, 1676, 2204, 2509 |
| HpyF3I | CTNAG | 5 cut(s) | 215, 1206, 1278, 1991, 2668 |
| HpySE526I | ACGT | 2 cut(s) | 829, 919 |
| HspAI | GCGC | 1 cut(s) | 2190 |
| Kpn2I | TCCGGA | 1 cut(s) | 1292 |
| KspAI | GTTAAC | 1 cut(s) | 2329 |
| Kzo9I | GATC | 6 cut(s) | 325, 1198, 1240, 1588, 2377, 2390 |
| LguI | GCTCTTC | 1 cut(s) | 1855 |
| LmnI | GCTCC | 5 cut(s) | 490, 665, 1190, 2500, 2664 |
| Lsp1109I | GCAGC | 6 cut(s) | 679, 1243, 2093, 2398, 2461, 2528 |
| LweI | GCATC | 5 cut(s) | 286, 402, 589, 2437, 2539 |
| MabI | ACCWGGT | 1 cut(s) | 2656 |
| MaeI | CTAG | 6 cut(s) | 183, 756, 1056, 1394, 1493, 2342 |
| MaeII | ACGT | 2 cut(s) | 829, 919 |
| MaeIII | GTNAC | 3 cut(s) | 1051, 1765, 2248 |
| MalI | GATC | 6 cut(s) | 327, 1200, 1242, 1590, 2379, 2392 |
| MboI | GATC | 6 cut(s) | 325, 1198, 1240, 1588, 2377, 2390 |
| MfeI | CAATTG | 2 cut(s) | 1302, 1761 |
| MflI | RGATCY | 1 cut(s) | 1240 |
| MhlI | GDGCHC | 2 cut(s) | 435, 1792 |
| MlyI | GAGTC | 3 cut(s) | 1743, 1934, 1996 |
| MmeI | TCCRAC | 5 cut(s) | 626, 772, 1762, 2239, 2642 |
| MroI | TCCGGA | 1 cut(s) | 1292 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1581, 1716 |
| MspA1I | CMGCKG | 1 cut(s) | 2519 |
| MspI | CCGG | 4 cut(s) | 1293, 1563, 2444, 2553 |
| MspR9I | CCNGG | 3 cut(s) | 2349, 2554, 2658 |
| MunI | CAATTG | 2 cut(s) | 1302, 1761 |
| Mva1269I | GAATGC | 1 cut(s) | 655 |
| MvaI | CCWGG | 2 cut(s) | 2349, 2658 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 473, 482, 776, 1001, 1097, 1592, 1676, 2204, 2509 |
| NciI | CCSGG | 1 cut(s) | 2554 |
| NcoI | CCATGG | 2 cut(s) | 288, 1086 |
| NdeII | GATC | 6 cut(s) | 325, 1198, 1240, 1588, 2377, 2390 |
| NlaIV | GGNNCC | 2 cut(s) | 1969, 2655 |
| NmuCI | GTSAC | 2 cut(s) | 1765, 2248 |
| NspI | RCATGY | 4 cut(s) | 1074, 1674, 1848, 2015 |
| PacI | TTAATTAA | 1 cut(s) | 1170 |
| PaeI | GCATGC | 2 cut(s) | 1848, 2015 |
| PciSI | GCTCTTC | 1 cut(s) | 1855 |
| PctI | GAATGC | 1 cut(s) | 655 |
| PfeI | GAWTC | 8 cut(s) | 36, 266, 983, 1134, 1282, 1499, 2232, 2243 |
| PkrI | GCNGC | 7 cut(s) | 694, 1147, 1258, 2108, 2413, 2476, 2518 |
| PleI | GAGTC | 3 cut(s) | 1742, 1934, 1996 |
| PpsI | GAGTC | 3 cut(s) | 1742, 1934, 1996 |
| Ppu21I | YACGTR | 1 cut(s) | 920 |
| PshAI | GACNNNNGTC | 1 cut(s) | 117 |
| PshBI | ATTAAT | 1 cut(s) | 1170 |
| PsiI | TTATAA | 1 cut(s) | 366 |
| Psp6I | CCWGG | 2 cut(s) | 2347, 2656 |
| PspFI | CCCAGC | 1 cut(s) | 2503 |
| PspGI | CCWGG | 2 cut(s) | 2347, 2656 |
| PspN4I | GGNNCC | 2 cut(s) | 1969, 2655 |
| PspPI | GGNCC | 2 cut(s) | 1548, 1968 |
| PsuI | RGATCY | 1 cut(s) | 1240 |
| PvuII | CAGCTG | 1 cut(s) | 2519 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1581, 1716 |
| SapI | GCTCTTC | 1 cut(s) | 1855 |
| SatI | GCNGC | 7 cut(s) | 693, 1146, 1257, 2107, 2412, 2475, 2517 |
| Sau3AI | GATC | 6 cut(s) | 325, 1198, 1240, 1588, 2377, 2390 |
| Sau96I | GGNCC | 2 cut(s) | 1548, 1968 |
| ScaI | AGTACT | 1 cut(s) | 457 |
| SchI | GAGTC | 3 cut(s) | 1743, 1934, 1996 |
| ScrFI | CCNGG | 3 cut(s) | 2349, 2554, 2658 |
| SduI | GDGCHC | 2 cut(s) | 435, 1792 |
| SexAI | ACCWGGT | 1 cut(s) | 2656 |
| SfaNI | GCATC | 5 cut(s) | 286, 402, 589, 2437, 2539 |
| SfcI | CTRYAG | 2 cut(s) | 406, 1691 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1581, 1716 |
| SmlI | CTYRAG | 1 cut(s) | 1369 |
| SmoI | CTYRAG | 1 cut(s) | 1369 |
| SpeI | ACTAGT | 1 cut(s) | 1055 |
| SphI | GCATGC | 2 cut(s) | 1848, 2015 |
| SsiI | CCGC | 3 cut(s) | 768, 1146, 1925 |
| SspMI | CTAG | 6 cut(s) | 183, 756, 1056, 1394, 1493, 2342 |
| StyD4I | CCNGG | 3 cut(s) | 2347, 2552, 2656 |
| StyI | CCWWGG | 4 cut(s) | 288, 1086, 1854, 2383 |
| TaaI | ACNGT | 7 cut(s) | 174, 275, 334, 1051, 1385, 1810, 2418 |
| TaiI | ACGT | 2 cut(s) | 832, 922 |
| TaqI | TCGA | 4 cut(s) | 328, 1478, 1887, 2389 |
| TatI | WGTACW | 8 cut(s) | 176, 455, 1044, 1355, 1473, 1747, 1773, 2076 |
| TauI | GCSGC | 1 cut(s) | 1148 |
| TfiI | GAWTC | 8 cut(s) | 36, 266, 983, 1134, 1282, 1499, 2232, 2243 |
| TseFI | GTSAC | 2 cut(s) | 1765, 2248 |
| TseI | GCWGC | 6 cut(s) | 692, 1256, 2106, 2411, 2474, 2516 |
| Tsp45I | GTSAC | 2 cut(s) | 1765, 2248 |
| TspGWI | ACGGA | 2 cut(s) | 2301, 2505 |
| VspI | ATTAAT | 1 cut(s) | 1170 |
| XbaI | TCTAGA | 1 cut(s) | 1492 |
| XceI | RCATGY | 4 cut(s) | 1074, 1674, 1848, 2015 |
| XmiI | GTMKAC | 2 cut(s) | 1060, 1380 |
| XspI | CTAG | 6 cut(s) | 183, 756, 1056, 1394, 1493, 2342 |
| ZrmI | AGTACT | 1 cut(s) | 457 |