Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012277

Physical Location & Seq

Genomic Coordinates Reverse (-)

2838020 .. 2840806

Gene Structure 2787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16163

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2667 bp

ATGAAATCTCTCCTCAATCCCAAAATCTCACTCTCCACTCTCAAATCCATATCCTCCCTTGCCGCCGTTAAAAACCCATCATTTTTCCCCATTGAAAACCCCGAAATTCCCAGTCTTTTTGACCCCTTCCAATTCCTCAATGATTACACAAAATCAACTCACTGCAGTATTACAAACACTAGAATCTTACATGCCCACTTTCTCAGAATCGATTTACTCCCATCCAATGTCGCCATTGCGAACTCTTTACTTGGCTGTTACTGTAGATCTGGTTCCATGGCAGATGCACTCCACCTGTTCGATGTAATTCCTGAGAGAAATGTGATCTCTTGGAATTTGATGGTTTCGGGTTATAACAGGAGCTCGATGTTTGAGAATTCATGGGGAGTGTTCTGCAGGATGCATTGTTCGGGTTTTGAGCCTGATGAGTTTACTTATGGGAGTGTTCTTTCGGCTTGCACTGCCTTGCAAGCTTCTAGTTTGGGTGAGCAGGTTTATTCGCTTGCAACGAAAAATGGGTTCTTTAGTAGTGATTATGTTCGGTCTGGAATGATAGACTTGTTTGCGAAAAGTGGCAGCTTTGAGGATGCTTTGAGGGTGTTTCATGATGTTTCGTGTTGGAATGTTGTGATTTGGAACGGTGTTATCTCTGGGGCTGTGAGAAATGGAGAGAACGGAGTTGCGCTGGACCTTTTTCGACAAATGTGTTGTGGGTTTTTGTTGCCGAATAGCTTTACGTTTTCTAGTGTTTTGACTGCCTGTGCTGCACTTGGTGAAATTGGGATCGGGAGGGAGGTTCAAGGGTGGGTAATTAAGCGTGGTGCAGAAGATGTGTTTGTTGGGACTGCCATTGTAGACTTATATTCCAAATGTGGAAAGATGAATGAAGCTGTCAAGGAATTCTCCCGTATGCCAACACGTAATGTGGTGTCTTGGACTGCCATCATTTCTGGTTTTGTGGGGAAGGACGATTCTATCTCTGGCCTCAAGTTTTTCAGAGAAATGAGAAGAATGGGAGAGGAAATAAATAAGTTTACTATTACTAGCGTACTCACTGCATGTGCTAAACCATCCATGAGTGAAGAGGCAATCCAAATCCATTCACTGATATTAAAATCTGGACTCTATTCAGCTGCAGAAGTTGGATCCGCTTTAATTAATGCGTATTCAAAAATAGGAGCTGTAGATGTATCTGAAATGGTGTTCAGGGAGATAAGAACTTTAAAGGATCTGGGTACATGGGCTGCAATGATATCTTCTTTTGCGCAGAATCAAAATCCTGAAAGCGCAATTGGAGTTTTCCAGAGAATGTTACAGGAAAGTGTGAGACCAGATAAGTTTTCTACTTCTAGTGTCTTGAGTATTATAGACTATTTAGGTGTAGGGAGGCAGATACATAGCTACACTCTTAAAGTTGGGTTGGCCTTTGACGCTTCTGTTGGTAGTTCCCTTTCCACAATGTATTCAAAATGTGACAGTCTAGAGGAATCTTACAAGGCATTTCAGCAAATTCGTGACAAAGACAATGTTTCATGGGCTTCAATGATTGCCGGTTTTTTAGAACATGGCTTTGCAGATCAAGCCCTTCAGTTATATCGAGAGATGCCATGCAAAGAAATAATACCTGATCAGATGACTTTAGCTGCAATTCTAACTGCATGTTCTGCTTCTCGTTCCTTACTGATTGGTAAGGAAATTCATGGTCATGCTCTTCGTGCTGGAGTTGGAAGAGATGTAGTTGTTGGTGGTGCAATTGTGAACATGTACTCAAAATGCAGTGCTCTAGAATTGGCAAGGAAGGTGTTTGATATGCTTCCTCAAAAGGATGAAGTTGCATGCTCTTCACTGGTTTCAGGTTATGCCCAAAATGGGTGCATTGAAGAGGCACTTTTGCTGTTCCATCATATGCTAATGGCTGATTTGACCATTGATTCCTTCACAATTTCATCCATTCTTGGGGTCATTGCACCTTTGAATAACCCAAGTATTGGAACTCAAATGCATGCCCACATCACAAAAATTGGTTTGAATTCAGATGTTTCTGTTGGGAGCTCACTGGTGAGAATGTACTCAAAATGTGGAAGCATTGAAGATTGCCAGAAATCATTTGATCAAATCGAGAACCCTGACTTAATTTGCTGGACAGCTATGATTGCAAGCTATGCTCAGCATGGGAAAGGCGCAGAGGCTTTAAGAGGCTACGAGCTTTTGAAGGAAGAAGGAATCAAACCTGATTCAGTGACTTTTGTTGCAGTTTTATATGCTTGTAGCCATAACGGATTGGTTGACGAAGCTTATTTCTACTTAAATTCAATGGCTACTGATTACGGAATTAGGCCTGGTTATCGTCACTATGCCTGTATGGTTGATGTTCTTGGCCGATCAGGGAGGTTGAAAGAGGCTGAGAGGTTCATTATCAATATGCCTATTGAACCTAGTGGTTTAATATGGGGAACACTGCTTGCTGCTTGTGTGATACACAGAGATGTAGAGCTTGGAAAGTTAACAGCTAAAAAGATTATGGATTTGGAGCCATGTGATGCTAGCACATATGTTTCCCTTTCAAACATGTGTGCAGATTTGGGCCTGTGGGAAGAAGCCGAGCAGATTAGAGACCAGATGAGGGGAAATCGTACGAGGAAGGAACCTGGGTGGAGCTTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

888

Amino Acids

97.51

Weight (kDa)

5.82

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	106 - 153	6.4e-09	PPR repeat family
PPR_2	PF13041	208 - 255	8.7e-09	PPR repeat family
PPR_2	PF13041	307 - 356	1.7e-08	PPR repeat family
PPR_2	PF13041	508 - 554	1.5e-06	PPR repeat family
PPR_2	PF13041	709 - 757	1.2e-08	PPR repeat family
E_motif	PF20431	827 - 888	9.1e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74600
fragaria_vesca	FvH4_5g15030
malus_domestica	MD06G1192600.v1.1 MD14G1199400.v1.1
prunus_persica	Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1
pyrus_communis	pycom06g17070 pycom14g16530
rosa_chinensis	RchiOBHm_Chr7g0181221
rosa_laevigata	RLG00000005205
rosa_multiflora	Rmu_sc0001147.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272190
rosa_rugosa	Rorug06G0439600
rosa_samantha	Rh7AG041400 Rh7BG040700 Rh7CG042900 Rh7DG041200
rosa_wichuraiana	Rw7G003410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
Acc16I	TGCGCA	1 cut(s)	1266
Acc36I	ACCTGC	1 cut(s)	481
AccB7I	CCANNNNNTGG	1 cut(s)	1988
AccI	GTMKAC	1 cut(s)	855
AciI	CCGC	2 cut(s)	63, 1149
AclWI	GGATC	4 cut(s)	791, 1140, 1153, 1236
AcoI	YGGCCR	1 cut(s)	2377
AcsI	RAATTY	8 cut(s)	105, 334, 376, 899, 1509, 1695, 2029, 2308
AcuI	CTGAAG	1 cut(s)	1571
AdeI	CACNNNGTG	1 cut(s)	773
AfaI	GTAC	5 cut(s)	1050, 1237, 1766, 2069, 2635
AfiI	CCNNNNNNNGG	4 cut(s)	1869, 1956, 1988, 2623
AflIII	ACRYGT	3 cut(s)	917, 1761, 2568
AjnI	CCWGG	2 cut(s)	2338, 2647
AjuI	GAANNNNNNNTTGG	2 cut(s)	1275, 1307
AloI	GAACNNNNNNTCC	2 cut(s)	391, 423
Alw21I	GWGCWC	3 cut(s)	365, 1783, 2054
Alw26I	GTCTC	2 cut(s)	1321, 2607
AlwI	GGATC	4 cut(s)	791, 1140, 1153, 1236
AoxI	GGCC	5 cut(s)	982, 1422, 2336, 2377, 2584
ApeKI	GCWGC	6 cut(s)	576, 764, 1133, 1244, 1643, 2465
ApoI	RAATTY	8 cut(s)	105, 334, 376, 899, 1509, 1695, 2029, 2308
AseI	ATTAAT	1 cut(s)	1158
AspLEI	GCGC	4 cut(s)	685, 1267, 1289, 2183
AspS9I	GGNCC	2 cut(s)	688, 2584
AsuHPI	GGTGA	3 cut(s)	497, 785, 2071
AsuNHI	GCTAGC	1 cut(s)	2543
AvaII	GGWCC	1 cut(s)	688
BamHI	GGATCC	1 cut(s)	1145
BanII	GRGCYC	2 cut(s)	365, 2054
Bbv12I	GWGCWC	3 cut(s)	365, 1783, 2054
BbvI	GCAGC	6 cut(s)	588, 751, 1120, 1231, 1630, 2452
BccI	CCATC	6 cut(s)	85, 229, 334, 950, 1078, 1908
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	2340, 2649
BclI	TGATCA	2 cut(s)	1627, 2110
BcoDI	GTCTC	2 cut(s)	1321, 2607
BfaI	CTAG	9 cut(s)	180, 477, 744, 1044, 1350, 1481, 1784, 2436, 2544
BfmI	CTRYAG	5 cut(s)	163, 262, 394, 1134, 1182
BfuAI	ACCTGC	1 cut(s)	481
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	7 cut(s)	63, 577, 765, 1134, 1245, 1644, 2466
BlpI	GCTNAGC	1 cut(s)	2166
BlsI	GCNGC	7 cut(s)	64, 578, 766, 1135, 1246, 1645, 2467
Bme1390I	CCNGG	2 cut(s)	2340, 2649
Bme18I	GGWCC	1 cut(s)	688
BmgT120I	GGNCC	2 cut(s)	688, 2584
BmiI	GGNNCC	4 cut(s)	274, 1147, 2532, 2646
BmrFI	CCNGG	2 cut(s)	2340, 2649
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	5 cut(s)	274, 390, 577, 1593, 2530
BmtI	GCTAGC	1 cut(s)	2547
BmuI	ACTGGG	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	1740
Bpu1102I	GCTNAGC	1 cut(s)	2166
BpuEI	CTTGAG	2 cut(s)	971, 1378
Bsa29I	ATCGAT	1 cut(s)	210
BsaAI	YACGTR	1 cut(s)	920
BsaI	GGTCTC	2 cut(s)	1321, 2607
BsaJI	CCNNGG	2 cut(s)	276, 2648
Bsc4I	CCNNNNNNNGG	4 cut(s)	1869, 1956, 1988, 2623
Bse118I	RCCGGY	1 cut(s)	1550
Bse1I	ACTGG	3 cut(s)	111, 1851, 2061
Bse3DI	GCAATG	3 cut(s)	234, 1254, 1962
BseBI	CCWGG	2 cut(s)	2340, 2649
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	276, 2648
BseGI	GGATG	6 cut(s)	221, 405, 592, 1070, 1831, 1946
BseLI	CCNNNNNNNGG	4 cut(s)	1869, 1956, 1988, 2623
BseMI	GCAATG	3 cut(s)	234, 1254, 1962
BseMII	CTCAG	4 cut(s)	217, 303, 2180, 2394
BseNI	ACTGG	3 cut(s)	111, 1851, 2061
BseXI	GCAGC	6 cut(s)	588, 751, 1120, 1231, 1630, 2452
BsgI	GTGCAG	3 cut(s)	750, 843, 2595
BshFI	GGCC	5 cut(s)	984, 1424, 2338, 2379, 2586
BshVI	ATCGAT	1 cut(s)	210
BsiHKAI	GWGCWC	3 cut(s)	365, 1783, 2054
BsiSI	CCGG	1 cut(s)	1551
BsiWI	CGTACG	1 cut(s)	2633
BslFI	GGGAC	1 cut(s)	856
BslI	CCNNNNNNNGG	4 cut(s)	1869, 1956, 1988, 2623
BsmAI	GTCTC	2 cut(s)	1321, 2607
BsmFI	GGGAC	1 cut(s)	856
BsnI	GGCC	5 cut(s)	984, 1424, 2338, 2379, 2586
Bso31I	GGTCTC	2 cut(s)	1321, 2607
Bsp1286I	GDGCHC	3 cut(s)	365, 1783, 2054
Bsp143I	GATC	9 cut(s)	266, 324, 783, 1145, 1228, 1576, 1627, 2110, 2381
Bsp1720I	GCTNAGC	1 cut(s)	2166
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	2 cut(s)	63, 1149
BspANI	GGCC	5 cut(s)	984, 1424, 2338, 2379, 2586
BspCNI	CTCAG	4 cut(s)	216, 304, 2179, 2395
BspDI	ATCGAT	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	4 cut(s)	274, 1147, 2532, 2646
BspMAI	CTGCAG	3 cut(s)	167, 398, 1138
BspMI	ACCTGC	1 cut(s)	481
BspOI	GCTAGC	1 cut(s)	2547
BspPI	GGATC	4 cut(s)	791, 1140, 1153, 1236
BspQI	GCTCTTC	2 cut(s)	1716, 1846
BspTNI	GGTCTC	2 cut(s)	1321, 2607
BsrDI	GCAATG	3 cut(s)	234, 1254, 1962
BsrFI	RCCGGY	1 cut(s)	1550
BsrI	ACTGG	3 cut(s)	111, 1851, 2061
BssAI	RCCGGY	1 cut(s)	1550
BssECI	CCNNGG	2 cut(s)	276, 2648
BssMI	GATC	9 cut(s)	266, 324, 783, 1145, 1228, 1576, 1627, 2110, 2381
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	2340, 2649
Bst4CI	ACNGT	3 cut(s)	263, 641, 1478
Bst6I	CTCTTC	5 cut(s)	1077, 1716, 1723, 1846, 1875
BstAPI	GCANNNNNTGC	2 cut(s)	1664, 2162
BstBAI	YACGTR	1 cut(s)	920
BstC8I	GCNNGC	8 cut(s)	457, 471, 504, 1837, 2004, 2158, 2463, 2545
BstDEI	CTNAG	5 cut(s)	203, 312, 2166, 2403, 2659
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	6 cut(s)	221, 405, 592, 1070, 1831, 1946
BstHHI	GCGC	4 cut(s)	685, 1267, 1289, 2183
BstKTI	GATC	9 cut(s)	269, 327, 786, 1148, 1231, 1579, 1630, 2113, 2384
BstMAI	GTCTC	2 cut(s)	1321, 2607
BstMBI	GATC	9 cut(s)	266, 324, 783, 1145, 1228, 1576, 1627, 2110, 2381
BstMWI	GCNNNNNNNGC	9 cut(s)	461, 470, 764, 1430, 1580, 1664, 1715, 2153, 2162
BstNI	CCWGG	2 cut(s)	2340, 2649
BstNSI	RCATGY	7 cut(s)	194, 1062, 1662, 1765, 1839, 2006, 2572
BstSCI	CCNGG	2 cut(s)	2338, 2647
BstSFI	CTRYAG	5 cut(s)	163, 262, 394, 1134, 1182
BstV1I	GCAGC	6 cut(s)	588, 751, 1120, 1231, 1630, 2452
BstX2I	RGATCY	3 cut(s)	266, 1145, 1228
BstYI	RGATCY	3 cut(s)	266, 1145, 1228
Bsu15I	ATCGAT	1 cut(s)	210
BsuRI	GGCC	5 cut(s)	984, 1424, 2338, 2379, 2586
BsuTUI	ATCGAT	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	6 cut(s)	221, 405, 592, 1070, 1831, 1946
BtsI	GCAGTG	5 cut(s)	160, 459, 1053, 1783, 2456
BtsIMutI	CAGTG	9 cut(s)	160, 459, 1053, 1103, 1783, 1844, 2054, 2244, 2456
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	8 cut(s)	457, 471, 504, 1837, 2004, 2158, 2463, 2545
CciI	TCATGA	1 cut(s)	604
CfoI	GCGC	4 cut(s)	685, 1267, 1289, 2183
Cfr10I	RCCGGY	1 cut(s)	1550
Cfr13I	GGNCC	2 cut(s)	688, 2584
ClaI	ATCGAT	1 cut(s)	210
CseI	GACGC	1 cut(s)	1439
Csp6I	GTAC	5 cut(s)	1049, 1236, 1765, 2068, 2634
CviQI	GTAC	5 cut(s)	1049, 1236, 1765, 2068, 2634
DdeI	CTNAG	5 cut(s)	203, 312, 2166, 2403, 2659
DpnI	GATC	9 cut(s)	268, 326, 785, 1147, 1230, 1578, 1629, 2112, 2383
DpnII	GATC	9 cut(s)	266, 324, 783, 1145, 1228, 1576, 1627, 2110, 2381
DraI	TTTAAA	1 cut(s)	1224
DraIII	CACNNNGTG	1 cut(s)	773
EaeI	YGGCCR	1 cut(s)	2377
Eam1104I	CTCTTC	5 cut(s)	1077, 1716, 1723, 1846, 1875
EarI	CTCTTC	5 cut(s)	1077, 1716, 1723, 1846, 1875
Ecl136II	GAGCTC	2 cut(s)	363, 2052
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	2338
Eco24I	GRGCYC	2 cut(s)	365, 2054
Eco31I	GGTCTC	2 cut(s)	1321, 2607
Eco32I	GATATC	1 cut(s)	1254
Eco47I	GGWCC	1 cut(s)	688
Eco53kI	GAGCTC	2 cut(s)	363, 2052
Eco57I	CTGAAG	1 cut(s)	1571
EcoICRI	GAGCTC	2 cut(s)	363, 2052
EcoRI	GAATTC	3 cut(s)	376, 899, 2029
EcoRII	CCWGG	2 cut(s)	2338, 2647
EcoRV	GATATC	1 cut(s)	1254
EcoT14I	CCWWGG	1 cut(s)	276
EcoT22I	ATGCAT	2 cut(s)	405, 2004
EcoT38I	GRGCYC	2 cut(s)	365, 2054
ErhI	CCWWGG	1 cut(s)	276
FalI	AAGNNNNNCTT	2 cut(s)	1872, 1904
FaqI	GGGAC	1 cut(s)	856
FauNDI	CATATG	2 cut(s)	1905, 2551
FbaI	TGATCA	2 cut(s)	1627, 2110
FblI	GTMKAC	1 cut(s)	855
Fnu4HI	GCNGC	7 cut(s)	63, 577, 765, 1134, 1245, 1644, 2466
FokI	GGATG	6 cut(s)	208, 412, 599, 1057, 1838, 1933
FriOI	GRGCYC	2 cut(s)	365, 2054
Fsp4HI	GCNGC	7 cut(s)	63, 577, 765, 1134, 1245, 1644, 2466
FspBI	CTAG	9 cut(s)	180, 477, 744, 1044, 1350, 1481, 1784, 2436, 2544
FspI	TGCGCA	1 cut(s)	1266
GlaI	GCGC	4 cut(s)	684, 1266, 1288, 2182
GluI	GCNGC	7 cut(s)	63, 577, 765, 1134, 1245, 1644, 2466
GsuI	CTGGAG	1 cut(s)	1740
HaeIII	GGCC	5 cut(s)	984, 1424, 2338, 2379, 2586
HapII	CCGG	1 cut(s)	1551
HgaI	GACGC	1 cut(s)	1439
HhaI	GCGC	4 cut(s)	685, 1267, 1289, 2183
Hin6I	GCGC	4 cut(s)	683, 1265, 1287, 2181
HinP1I	GCGC	4 cut(s)	683, 1265, 1287, 2181
HincII	GTYRAC	2 cut(s)	2287, 2505
HindII	GTYRAC	2 cut(s)	2287, 2505
HindIII	AAGCTT	2 cut(s)	471, 2292
HinfI	GANTC	9 cut(s)	183, 207, 971, 1122, 1270, 1487, 1931, 2223, 2234
HpaI	GTTAAC	1 cut(s)	2505
HpaII	CCGG	1 cut(s)	1551
HphI	GGTGA	3 cut(s)	497, 785, 2071
Hpy166II	GTNNAC	6 cut(s)	432, 856, 1035, 1759, 2287, 2505
Hpy188I	TCNGA	5 cut(s)	206, 998, 1195, 1632, 2035
Hpy8I	GTNNAC	6 cut(s)	432, 856, 1035, 1759, 2287, 2505
HpyAV	CCTTC	8 cut(s)	136, 958, 1595, 1792, 1945, 2206, 2213, 2635
HpyCH4III	ACNGT	3 cut(s)	263, 641, 1478
HpyCH4IV	ACGT	2 cut(s)	737, 919
HpyF10VI	GCNNNNNNNGC	9 cut(s)	461, 470, 764, 1430, 1580, 1664, 1715, 2153, 2162
HpyF3I	CTNAG	5 cut(s)	203, 312, 2166, 2403, 2659
HpySE526I	ACGT	2 cut(s)	737, 919
HspAI	GCGC	4 cut(s)	683, 1265, 1287, 2181
Ksp22I	TGATCA	2 cut(s)	1627, 2110
KspAI	GTTAAC	1 cut(s)	2505
Kzo9I	GATC	9 cut(s)	266, 324, 783, 1145, 1228, 1576, 1627, 2110, 2381
LguI	GCTCTTC	2 cut(s)	1716, 1846
LmnI	GCTCC	5 cut(s)	360, 1178, 2049, 2530, 2655
Lsp1109I	GCAGC	6 cut(s)	588, 751, 1120, 1231, 1630, 2452
LweI	GCATC	5 cut(s)	274, 390, 577, 1593, 2530
MaeI	CTAG	9 cut(s)	180, 477, 744, 1044, 1350, 1481, 1784, 2436, 2544
MaeII	ACGT	2 cut(s)	737, 919
MaeIII	GTNAC	6 cut(s)	257, 1311, 1472, 1514, 2239, 2348
MalI	GATC	9 cut(s)	268, 326, 785, 1147, 1230, 1578, 1629, 2112, 2383
MboI	GATC	9 cut(s)	266, 324, 783, 1145, 1228, 1576, 1627, 2110, 2381
MfeI	CAATTG	2 cut(s)	1290, 1752
MflI	RGATCY	3 cut(s)	266, 1145, 1228
MhlI	GDGCHC	3 cut(s)	365, 1783, 2054
MlyI	GAGTC	1 cut(s)	1116
MmeI	TCCRAC	3 cut(s)	599, 1123, 1705
Mph1103I	ATGCAT	2 cut(s)	405, 2004
MslI	CAYNNNNRTG	2 cut(s)	1704, 2484
MspA1I	CMGCKG	1 cut(s)	1133
MspI	CCGG	1 cut(s)	1551
MspR9I	CCNGG	2 cut(s)	2340, 2649
MunI	CAATTG	2 cut(s)	1290, 1752
MvaI	CCWGG	2 cut(s)	2340, 2649
MwoI	GCNNNNNNNGC	9 cut(s)	461, 470, 764, 1430, 1580, 1664, 1715, 2153, 2162
NcoI	CCATGG	1 cut(s)	276
NdeI	CATATG	2 cut(s)	1905, 2551
NdeII	GATC	9 cut(s)	266, 324, 783, 1145, 1228, 1576, 1627, 2110, 2381
NheI	GCTAGC	1 cut(s)	2543
NlaIV	GGNNCC	4 cut(s)	274, 1147, 2532, 2646
NmeAIII	GCCGAG	1 cut(s)	2626
NmuCI	GTSAC	4 cut(s)	1472, 1514, 2239, 2348
NsbI	TGCGCA	1 cut(s)	1266
NsiI	ATGCAT	2 cut(s)	405, 2004
NspI	RCATGY	7 cut(s)	194, 1062, 1662, 1765, 1839, 2006, 2572
PacI	TTAATTAA	1 cut(s)	1158
PaeI	GCATGC	2 cut(s)	1839, 2006
PagI	TCATGA	1 cut(s)	604
PceI	AGGCCT	1 cut(s)	2338
PciI	ACATGT	2 cut(s)	1761, 2568
PciSI	GCTCTTC	2 cut(s)	1716, 1846
PcsI	WCGNNNNNNNCGW	1 cut(s)	506
PfeI	GAWTC	8 cut(s)	183, 207, 971, 1270, 1487, 1931, 2223, 2234
Pfl23II	CGTACG	1 cut(s)	2633
PflMI	CCANNNNNTGG	1 cut(s)	1988
PkrI	GCNGC	7 cut(s)	64, 578, 766, 1135, 1246, 1645, 2467
PleI	GAGTC	1 cut(s)	1116
PpsI	GAGTC	1 cut(s)	1116
Ppu21I	YACGTR	1 cut(s)	920
PscI	ACATGT	2 cut(s)	1761, 2568
PshBI	ATTAAT	1 cut(s)	1158
PsiI	TTATAA	1 cut(s)	354
Psp124BI	GAGCTC	2 cut(s)	365, 2054
Psp6I	CCWGG	2 cut(s)	2338, 2647
PspGI	CCWGG	2 cut(s)	2338, 2647
PspLI	CGTACG	1 cut(s)	2633
PspN4I	GGNNCC	4 cut(s)	274, 1147, 2532, 2646
PspPI	GGNCC	2 cut(s)	688, 2584
PsrI	GAACNNNNNNTAC	2 cut(s)	256, 288
PstI	CTGCAG	3 cut(s)	167, 398, 1138
PsuI	RGATCY	3 cut(s)	266, 1145, 1228
PvuII	CAGCTG	1 cut(s)	1133
RsaI	GTAC	5 cut(s)	1050, 1237, 1766, 2069, 2635
RsaNI	GTAC	5 cut(s)	1049, 1236, 1765, 2068, 2634
RseI	CAYNNNNRTG	2 cut(s)	1704, 2484
SacI	GAGCTC	2 cut(s)	365, 2054
SapI	GCTCTTC	2 cut(s)	1716, 1846
SatI	GCNGC	7 cut(s)	63, 577, 765, 1134, 1245, 1644, 2466
Sau3AI	GATC	9 cut(s)	266, 324, 783, 1145, 1228, 1576, 1627, 2110, 2381
Sau96I	GGNCC	2 cut(s)	688, 2584
SchI	GAGTC	1 cut(s)	1116
ScrFI	CCNGG	2 cut(s)	2340, 2649
SduI	GDGCHC	3 cut(s)	365, 1783, 2054
SfaNI	GCATC	5 cut(s)	274, 390, 577, 1593, 2530
SfcI	CTRYAG	5 cut(s)	163, 262, 394, 1134, 1182
SinI	GGWCC	1 cut(s)	688
SmiMI	CAYNNNNRTG	2 cut(s)	1704, 2484
SmlI	CTYRAG	2 cut(s)	986, 1357
SmoI	CTYRAG	2 cut(s)	986, 1357
SphI	GCATGC	2 cut(s)	1839, 2006
SseBI	AGGCCT	1 cut(s)	2338
SsiI	CCGC	2 cut(s)	63, 1149
SspMI	CTAG	9 cut(s)	180, 477, 744, 1044, 1350, 1481, 1784, 2436, 2544
SstI	GAGCTC	2 cut(s)	365, 2054
StuI	AGGCCT	1 cut(s)	2338
StyD4I	CCNGG	2 cut(s)	2338, 2647
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	263, 641, 1478
TaiI	ACGT	2 cut(s)	740, 922
TaqI	TCGA	6 cut(s)	210, 300, 365, 697, 1597, 2118
TaqII	GACCGA	1 cut(s)	531
TatI	WGTACW	2 cut(s)	1764, 2067
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	8 cut(s)	183, 207, 971, 1270, 1487, 1931, 2223, 2234
TscAI	CASTG	9 cut(s)	167, 466, 1060, 1110, 1783, 1851, 2061, 2244, 2463
TseFI	GTSAC	4 cut(s)	1472, 1514, 2239, 2348
TseI	GCWGC	6 cut(s)	576, 764, 1133, 1244, 1643, 2465
Tsp45I	GTSAC	4 cut(s)	1472, 1514, 2239, 2348
TspGWI	ACGGA	3 cut(s)	690, 2292, 2343
TspRI	CASTG	9 cut(s)	167, 466, 1060, 1110, 1783, 1851, 2061, 2244, 2463
Van91I	CCANNNNNTGG	1 cut(s)	1988
VpaK11BI	GGWCC	1 cut(s)	688
VspI	ATTAAT	1 cut(s)	1158
XapI	RAATTY	8 cut(s)	105, 334, 376, 899, 1509, 1695, 2029, 2308
XbaI	TCTAGA	2 cut(s)	1480, 1783
XceI	RCATGY	7 cut(s)	194, 1062, 1662, 1765, 1839, 2006, 2572
XmiI	GTMKAC	1 cut(s)	855
XspI	CTAG	9 cut(s)	180, 477, 744, 1044, 1350, 1481, 1784, 2436, 2544
Zsp2I	ATGCAT	2 cut(s)	405, 2004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.