Rorug06G0439600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012277
Physical Location & Seq
Reverse (-)
57293812 .. 57294651
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0439600.1

Sequence Viewer

Length: 720 bp
ATGGCTGGCCTGAACTTTGAAGCTCTGAGAAACCTGCACAACTCTGCTAATGATCTTCTCCACTCTCCTATCATCCAGCAAGCTCTGGTCCGCAACAGTCAAGAAAAATGGGTTCATGAAGTCTCGGAAGCATCTCTGAGACTGTTGGATGTGTGCAGCATTTCGAAAGACGTTCTTTTGCTTGTGAAAGAGCATCTCCAGGACCTTCAGTTCACTTTACGTAGAGTGACCAGCTCCGGCGAAGAAGATATTGGGAGCAAAATGACAGCCTACAATTTCTATAGGAACAAGTTGAAGAAGGAGACCCTCAAGTGCTTGAATTCTTTGAAAGGACGTCCTATGAATAACAAATCCTCCATCGTTAGCTCAGAAATTTGCCCTATAGACGAGAACCTTACGCTTGTTGTAGATGTGCTAAGACAAGTGAGGGTCACCACTGTTTCCATTGTGGAGACTCTGCTGTCTCTCATTTCCATTCCCTGGCTGGATGGAAAATCAACTAGTAGAAGTACCGCTACTTCTTTCAAGTTCATGTCCAAGTTTGTGTGTGGAAGGAGCCAAAAAGTACATGACCTATGCGATGCAACGGCGCTTCAGAGTGCGAATACAAGGTTGGATGCTGTGGAGATTGCCATTCAAGATCTTCAAGTTGAATTAGAGTGCATGTTCAGGCGCTTGATCGACACCAGAGTTGCACTTCTTAACATCCTTACCAACTAG

Protein Analysis

239

Amino Acids

26.9

Weight (kDa)

8.21

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 6 - 236 1e-63 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012277)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74600
fragaria_vesca FvH4_5g15030
malus_domestica MD06G1192600.v1.1 MD14G1199400.v1.1
prunus_persica Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1
pyrus_communis pycom06g17070 pycom14g16530
rosa_chinensis RchiOBHm_Chr7g0181221
rosa_laevigata RLG00000005205
rosa_multiflora Rmu_sc0001147.1_g000014
rosa_roxburghii Rroxscaffold_3G00272190
rosa_rugosa Rorug06G0439600
rosa_samantha Rh7AG041400 Rh7BG040700 Rh7CG042900 Rh7DG041200
rosa_wichuraiana Rw7G003410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 460
AatII GACGTC 1 cut(s) 337
Acc36I ACCTGC 1 cut(s) 42
AccB7I CCANNNNNTGG 1 cut(s) 480
AciI CCGC 2 cut(s) 91, 513
AcsI RAATTY 2 cut(s) 319, 372
AcuI CTGAAG 2 cut(s) 191, 578
AcyI GRCGYC 1 cut(s) 334
AfaI GTAC 2 cut(s) 511, 567
AfiI CCNNNNNNNGG 1 cut(s) 480
AgsI TTSAA 8 cut(s) 20, 295, 319, 328, 526, 638, 647, 653
AhlI ACTAGT 1 cut(s) 500
AjnI CCWGG 2 cut(s) 198, 479
AjuI GAANNNNNNNTTGG 4 cut(s) 234, 266, 596, 628
AloI GAACNNNNNNTCC 2 cut(s) 194, 226
AluBI AGCT 4 cut(s) 23, 83, 234, 366
AluI AGCT 4 cut(s) 23, 83, 234, 366
Alw26I GTCTC 5 cut(s) 127, 133, 296, 446, 468
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 2 cut(s) 319, 372
AspLEI GCGC 2 cut(s) 592, 675
AspS9I GGNCC 2 cut(s) 88, 202
AsuHPI GGTGA 1 cut(s) 424
AsuII TTCGAA 1 cut(s) 164
AvaII GGWCC 2 cut(s) 88, 202
BarI GAAGNNNNNNTAC 4 cut(s) 499, 502, 531, 534
BbvI GCAGC 1 cut(s) 168
BccI CCATC 2 cut(s) 365, 482
BceAI ACGGC 1 cut(s) 603
BciT130I CCWGG 2 cut(s) 200, 481
BcoDI GTCTC 5 cut(s) 127, 133, 296, 446, 468
BcuI ACTAGT 1 cut(s) 500
BfaI CTAG 2 cut(s) 501, 718
BfmI CTRYAG 2 cut(s) 280, 381
BfoI RGCGCY 2 cut(s) 593, 676
BfuAI ACCTGC 1 cut(s) 42
BglII AGATCT 1 cut(s) 640
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 200, 481
Bme18I GGWCC 2 cut(s) 88, 202
BmgT120I GGNCC 2 cut(s) 88, 202
BmiI GGNNCC 1 cut(s) 557
BmrFI CCNGG 2 cut(s) 200, 481
BmsI GCATC 4 cut(s) 140, 202, 571, 607
BpmI CTGGAG 1 cut(s) 182
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 293
BsaAI YACGTR 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 334
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 479
BsaXI ACNNNNNCTCC 2 cut(s) 338, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 480
BseBI CCWGG 2 cut(s) 200, 481
BseDI CCNNGG 1 cut(s) 479
BseGI GGATG 5 cut(s) 72, 154, 493, 622, 705
BseLI CCNNNNNNNGG 1 cut(s) 480
BseMII CTCAG 3 cut(s) 17, 128, 381
BseXI GCAGC 1 cut(s) 168
BsgI GTGCAG 2 cut(s) 20, 175
BshFI GGCC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 480
BsmAI GTCTC 5 cut(s) 127, 133, 296, 446, 468
BsnI GGCC 1 cut(s) 9
Bso31I GGTCTC 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 164
Bsp143I GATC 3 cut(s) 52, 640, 678
BspACI CCGC 2 cut(s) 91, 513
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 3 cut(s) 18, 129, 380
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 557
BspMI ACCTGC 1 cut(s) 42
BspT104I TTCGAA 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 479
BssMI GATC 3 cut(s) 52, 640, 678
BssNI GRCGYC 1 cut(s) 334
Bst2UI CCWGG 2 cut(s) 200, 481
Bst4CI ACNGT 3 cut(s) 98, 144, 439
BstACI GRCGYC 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 221
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 7, 81
BstDEI CTNAG 4 cut(s) 26, 137, 367, 416
BstEII GGTNACC 1 cut(s) 430
BstF5I GGATG 5 cut(s) 72, 154, 493, 622, 705
BstH2I RGCGCY 2 cut(s) 593, 676
BstHHI GCGC 2 cut(s) 592, 675
BstKTI GATC 3 cut(s) 55, 643, 681
BstMAI GTCTC 5 cut(s) 127, 133, 296, 446, 468
BstMBI GATC 3 cut(s) 52, 640, 678
BstNI CCWGG 2 cut(s) 200, 481
BstNSI RCATGY 1 cut(s) 667
BstPI GGTNACC 1 cut(s) 430
BstSCI CCNGG 2 cut(s) 198, 479
BstSFI CTRYAG 2 cut(s) 280, 381
BstSNI TACGTA 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BsuRI GGCC 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 594
BtsCI GGATG 5 cut(s) 72, 154, 493, 622, 705
BtsIMutI CAGTG 1 cut(s) 435
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 7, 81
CciI TCATGA 1 cut(s) 115
CfoI GCGC 2 cut(s) 592, 675
Cfr13I GGNCC 2 cut(s) 88, 202
Csp6I GTAC 2 cut(s) 510, 566
CviAII CATG 4 cut(s) 116, 532, 569, 664
CviJI RGCY 9 cut(s) 5, 9, 23, 83, 234, 269, 366, 484, 558
CviKI_1 RGCY 9 cut(s) 5, 9, 23, 83, 234, 269, 366, 484, 558
CviQI GTAC 2 cut(s) 510, 566
DdeI CTNAG 4 cut(s) 26, 137, 367, 416
DpnI GATC 3 cut(s) 54, 642, 680
DpnII GATC 3 cut(s) 52, 640, 678
DrdI GACNNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 460
Eco105I TACGTA 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 296
Eco47I GGWCC 2 cut(s) 88, 202
Eco57I CTGAAG 2 cut(s) 191, 578
Eco91I GGTNACC 1 cut(s) 430
EcoO109I RGGNCCY 1 cut(s) 202
EcoO65I GGTNACC 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 2 cut(s) 198, 479
FaeI CATG 4 cut(s) 119, 535, 572, 667
FaiI YATR 8 cut(s) 117, 282, 341, 383, 533, 570, 577, 665
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 4 cut(s) 115, 531, 568, 663
Fnu4HI GCNGC 1 cut(s) 157
FokI GGATG 5 cut(s) 59, 161, 500, 629, 692
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 2 cut(s) 501, 718
GlaI GCGC 2 cut(s) 591, 674
GluI GCNGC 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 2 cut(s) 593, 676
HaeIII GGCC 1 cut(s) 9
HapII CCGG 1 cut(s) 237
HhaI GCGC 2 cut(s) 592, 675
Hin1I GRCGYC 1 cut(s) 334
Hin1II CATG 4 cut(s) 119, 535, 572, 667
Hin6I GCGC 2 cut(s) 590, 673
HinP1I GCGC 2 cut(s) 590, 673
HinfI GANTC 1 cut(s) 454
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 5 cut(s) 27, 127, 138, 370, 597
Hpy188III TCNNGA 3 cut(s) 101, 116, 638
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 3 cut(s) 215, 292, 546
HpyCH4III ACNGT 3 cut(s) 98, 144, 439
HpyCH4IV ACGT 3 cut(s) 171, 220, 334
HpyCH4V TGCA 5 cut(s) 37, 156, 584, 663, 695
HpyF3I CTNAG 4 cut(s) 26, 137, 367, 416
HpySE526I ACGT 3 cut(s) 171, 220, 334
Hsp92I GRCGYC 1 cut(s) 334
Hsp92II CATG 4 cut(s) 119, 535, 572, 667
HspAI GCGC 2 cut(s) 590, 673
Kzo9I GATC 3 cut(s) 52, 640, 678
LmnI GCTCC 3 cut(s) 239, 255, 555
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 4 cut(s) 140, 202, 571, 607
MaeI CTAG 2 cut(s) 501, 718
MaeII ACGT 3 cut(s) 171, 220, 334
MaeIII GTNAC 2 cut(s) 226, 430
MalI GATC 3 cut(s) 54, 642, 680
MboI GATC 3 cut(s) 52, 640, 678
MboII GAAGA 5 cut(s) 47, 254, 257, 307, 635
MflI RGATCY 1 cut(s) 640
MluCI AATT 4 cut(s) 274, 319, 372, 653
MlyI GAGTC 1 cut(s) 448
MmeI TCCRAC 2 cut(s) 126, 594
MnlI CCTC 3 cut(s) 317, 364, 420
MseI TTAA 1 cut(s) 702
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 2 cut(s) 200, 481
MvaI CCWGG 2 cut(s) 200, 481
NdeII GATC 3 cut(s) 52, 640, 678
NlaIII CATG 4 cut(s) 119, 535, 572, 667
NlaIV GGNNCC 1 cut(s) 557
NmuCI GTSAC 2 cut(s) 226, 430
NspI RCATGY 1 cut(s) 667
NspV TTCGAA 1 cut(s) 164
PagI TCATGA 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 480
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 1 cut(s) 158
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
Ppu21I YACGTR 1 cut(s) 221
PpuMI RGGWCCY 1 cut(s) 202
Psp5II RGGWCCY 1 cut(s) 202
Psp6I CCWGG 2 cut(s) 198, 479
PspEI GGTNACC 1 cut(s) 430
PspGI CCWGG 2 cut(s) 198, 479
PspN4I GGNNCC 1 cut(s) 557
PspPI GGNCC 2 cut(s) 88, 202
PspPPI RGGWCCY 1 cut(s) 202
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 2 cut(s) 511, 567
RsaNI GTAC 2 cut(s) 510, 566
SaqAI TTAA 1 cut(s) 702
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 3 cut(s) 52, 640, 678
Sau96I GGNCC 2 cut(s) 88, 202
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 2 cut(s) 200, 481
SfaNI GCATC 4 cut(s) 140, 202, 571, 607
SfcI CTRYAG 2 cut(s) 280, 381
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 2 cut(s) 88, 202
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SnaBI TACGTA 1 cut(s) 221
SpeI ACTAGT 1 cut(s) 500
Sse9I AATT 4 cut(s) 274, 319, 372, 653
SsiI CCGC 2 cut(s) 91, 513
SspMI CTAG 2 cut(s) 501, 718
StyD4I CCNGG 2 cut(s) 198, 479
TaaI ACNGT 3 cut(s) 98, 144, 439
TaiI ACGT 3 cut(s) 174, 223, 337
TaqI TCGA 2 cut(s) 164, 681
TasI AATT 4 cut(s) 274, 319, 372, 653
TatI WGTACW 1 cut(s) 565
Tru1I TTAA 1 cut(s) 702
Tru9I TTAA 1 cut(s) 702
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 2 cut(s) 226, 430
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 2 cut(s) 226, 430
TspDTI ATGAA 4 cut(s) 104, 132, 356, 520
TspRI CASTG 1 cut(s) 442
Van91I CCANNNNNTGG 1 cut(s) 480
VpaK11BI GGWCC 2 cut(s) 88, 202
XapI RAATTY 2 cut(s) 319, 372
XceI RCATGY 1 cut(s) 667
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XspI CTAG 2 cut(s) 501, 718
ZraI GACGTC 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.