Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012277

Physical Location & Seq

Genomic Coordinates Reverse (-)

2811689 .. 2815428

Gene Structure 3740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG042900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2676 bp

ATGCTTACACGAATCCGAATGAAATCTCTCCTCAATCCCAAAATCCCACACTCCACTCTCAAATCCATATCCTCCCTTGCCGCCGTTAAAAACCCATCATTTTTCCCCACCGAAATTCCCAGTCTTTTTGACCCCTTCCAATTCCTCAATGATTACACAAAATCAACTCACTGCAGTATTACAAACACTAGAATCTTACATGCCCACTTTCTCAGAATCGATTTACTCCCATCCAATGTCGCCATTGCGAACTCTTTACTTGGCTGCTACTGTAGATCTGGTTCCATGGCAGATGCACTCCACCTGTTCGATGTAATTCCTGAGAGAAATGTGATCTCTTGGAATTTGATGGTTTCGGGTTATAACAGGAGCTTGATGTTTGAGAAATCATGGGGAGTGTTTTGCAGGATGCGTTGTTCGGGTTTTGAGCCTGATGAGTTTACTTATGGGAGTGTTCTTTCGGCTTCCACTGCCTTGCAAGCTTCTAGTTTGGGTGAGCAGGTTTATTCGCTTGCAACGAAAAATGGGTTCGTTAGTAGTGATTATGTTCGGTCTGGAATGATAGACTTGTTTGCAAAAAGTGGCAGCTTTGAGGATGCTTTGAGGGTGTTTCGTGATGTTTCGTGTTGGAATGTTGTGATTTGGAACGGTGTTATCTCTGGGGCTGTGAGAAATGGAGAGAATGGAGTTGCGCTGGACCTTTTTCGACAAATGTGTTGTGGGTTTTTGTTGCCGAATAGCTTTACGTTTTCTAGTGTTTTGACTGCCTGTGCTGCACTTGGTGAAATTGGGATTGGGAGGGAGGTTCAAGGGTGGGTAATTAAGCGTGGTGTAGAAGATGTGTTTGTTGGGACTGCCATTGTAGACTTATATTCCAAATGTGGAAAGATGAATGAAGCTGTCAAGGAATTCTCCCGTATGCCAACACGTAATGTGGTTTCTTGGACTGCCATCATTTCTGGTTTTGTGGGGAAGGACGATTCTATCTCTGGCCTCAAGTTTTTCAGAGAAATGAGAAGAATGGGAGAGGAAATAAATAAGTTTACTATTACTAGCGTACTCACTGCATGTGCTAAACCATCCATGAGTGAAGAGGCAATCCAAATCCATTCACTGATATTAAAATCTGGACTCTATTCAGCTGCAGAAGTTGGATCCGCTTTAATTAATGCGTATTCAAAAATAGGAGCAGTTGATGTATCTGAAATGGTGTTCAGGGAGATAAGAACTTTAAAGGATCTGGGTACATGGGCTGCAATGATATCTTCTTTTGCGCAGAATCAAAATCCTGAAAGCGCAATTGGAGTTTTCCAGAGAATGTTACAGGAAAGTGTGAGACCAGATAAGTTTTCTACTTCTAGTGTCTTGAGTATTATAGACTATTTAGGTGTAGGGAGGCAGATACATAGCTACGCTCTTAAAGTTGGGTTGGCCTTTGACGCTTCTGTTGGTAGTTCCCTTTCCACAATGTATTCGAAATGCAATAGTCTAGAGGAATCTTACAAGGCATTTCAGCAAATTCGTGACAAAGACAATGTTTCATGGGCTTCAATGATTGCCGGTTTTTTAGAACATGGCTTTGCAGATCAAGCCCTTCAGTTATATCGAGAGATGCCATACAAAGAAATAATACCTGATCAGATGACTTTAGCTGTAATTCTAACTGCATGTTCTGCTTCTCGTTCCTTACTGATTGGTAAGGAAATTCATGGTCATGCTCTTCGTGCTGGAGTTGGAAGAGATGTAGTTGTTGGTGGTGCAATTGTGAACATGTACTCAAAATGCAGTGCTCTAGAATTGGCAAGGAAGGTGTTTGATATGCTTCCTCAAAAGGATGAAGTTGCATGCTCTTCACTGGTTTCAGGTTATGCCCAAAATGGGTGCATTGAAGAGGCATTTTTGCTGTTCCATTATATGCTAATGGCTGATTTGACCATTGATTCCTTCACAATTTCATCCATTCTTGGGGTCATTGCACTTTTGAATAACCCAAGTATTGGAACTCAAATGCATGCCCACATCACAAAAATTGGTTTGAATTCAGATGTTTCTGTTGGGAGCTCGCTAGTGAGAATGTACTCAAAATGTGGAAGCATTGAACATTGCCAGAAATCATTTGATCAAATCCAGAACCCTGACTTAATTTGCTGGACAGCTATGATTGCAAGCTATGCTCAGCATGGGAAAGGCGCAGAGGCTTTAAGAGGCTACGAGCTTTTGAAGGAAGAAGGAATCAAACCTGATTCAGTGACTTTTGTTGCAGTTTTATCTGCTTGTAGCCATAACGGATTGGTTGAAGAAGCTTATTTCTACTTAAATTCAATGGCTACTGATTACGGAATTAGGCCTGGTTATCGTCACTATGCCTGTATGGTTGATGTTCTTGGCCGATCAGGGAGGTTGAAAGAGGCTGAGAGGTTCATTATCAATATGCCTATTGAACCTAGTGGTTTAATATGGGGAACACTGCTTGCTGCTTGTGTGATACACAGAGATGTAGAGCTTGGAAAGTTAACAGCTAAAAAGATTATGGATTTGGAGCCATGTGATGCTAGCACATATGTTTCCCTTTCAAACATGTGTGCAGATTTGGGCCTGTGGGAAGAAGCCGAGCAGATTAGAGACCAGATGAGGGGAAATCGTACGAGGAAGGAACCTGGGTGGAGCTTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

891

Amino Acids

98.1

Weight (kDa)

6.44

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	109 - 154	1.1e-08	PPR repeat family
PPR_2	PF13041	211 - 258	8.7e-09	PPR repeat family
PPR_2	PF13041	310 - 359	1.7e-08	PPR repeat family
PPR_2	PF13041	511 - 557	1.5e-06	PPR repeat family
PPR_2	PF13041	612 - 655	9.7e-06	PPR repeat family
PPR_2	PF13041	712 - 760	3.5e-09	PPR repeat family
E_motif	PF20431	830 - 891	9.1e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74600
fragaria_vesca	FvH4_5g15030
malus_domestica	MD06G1192600.v1.1 MD14G1199400.v1.1
prunus_persica	Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1
pyrus_communis	pycom06g17070 pycom14g16530
rosa_chinensis	RchiOBHm_Chr7g0181221
rosa_laevigata	RLG00000005205
rosa_multiflora	Rmu_sc0001147.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272190
rosa_rugosa	Rorug06G0439600
rosa_samantha	Rh7AG041400 Rh7BG040700 Rh7CG042900 Rh7DG041200
rosa_wichuraiana	Rw7G003410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
Acc16I	TGCGCA	1 cut(s)	1275
Acc36I	ACCTGC	1 cut(s)	490
AccB7I	CCANNNNNTGG	1 cut(s)	1997
AccI	GTMKAC	1 cut(s)	864
AciI	CCGC	2 cut(s)	81, 1158
AclWI	GGATC	3 cut(s)	1149, 1162, 1245
AcoI	YGGCCR	1 cut(s)	2386
AcsI	RAATTY	7 cut(s)	114, 343, 908, 1518, 1704, 2038, 2317
AcuI	CTGAAG	1 cut(s)	1580
AdeI	CACNNNGTG	1 cut(s)	782
AfaI	GTAC	5 cut(s)	1059, 1246, 1775, 2078, 2644
AfiI	CCNNNNNNNGG	4 cut(s)	1878, 1965, 1997, 2632
AflIII	ACRYGT	3 cut(s)	926, 1770, 2577
AjnI	CCWGG	2 cut(s)	2347, 2656
AjuI	GAANNNNNNNTTGG	4 cut(s)	777, 809, 1284, 1316
AloI	GAACNNNNNNTCC	2 cut(s)	400, 432
Alw21I	GWGCWC	2 cut(s)	1792, 2063
Alw26I	GTCTC	2 cut(s)	1330, 2616
AlwI	GGATC	3 cut(s)	1149, 1162, 1245
AoxI	GGCC	5 cut(s)	991, 1431, 2345, 2386, 2593
ApeKI	GCWGC	6 cut(s)	264, 585, 773, 1142, 1253, 2474
ApoI	RAATTY	7 cut(s)	114, 343, 908, 1518, 1704, 2038, 2317
AseI	ATTAAT	1 cut(s)	1167
AspLEI	GCGC	4 cut(s)	694, 1276, 1298, 2192
AspS9I	GGNCC	2 cut(s)	697, 2593
AsuHPI	GGTGA	2 cut(s)	506, 794
AsuII	TTCGAA	1 cut(s)	1475
AsuNHI	GCTAGC	1 cut(s)	2552
AvaII	GGWCC	1 cut(s)	697
BamHI	GGATCC	1 cut(s)	1154
BanII	GRGCYC	1 cut(s)	2063
Bbv12I	GWGCWC	2 cut(s)	1792, 2063
BbvI	GCAGC	6 cut(s)	251, 597, 760, 1129, 1240, 2461
BccI	CCATC	5 cut(s)	103, 238, 343, 959, 1087
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	2349, 2658
BclI	TGATCA	2 cut(s)	1636, 2119
BcoDI	GTCTC	2 cut(s)	1330, 2616
BfmI	CTRYAG	3 cut(s)	172, 271, 1143
BfuAI	ACCTGC	1 cut(s)	490
BglII	AGATCT	1 cut(s)	275
BisI	GCNGC	7 cut(s)	81, 265, 586, 774, 1143, 1254, 2475
BlpI	GCTNAGC	1 cut(s)	2175
BlsI	GCNGC	7 cut(s)	82, 266, 587, 775, 1144, 1255, 2476
Bme1390I	CCNGG	2 cut(s)	2349, 2658
Bme18I	GGWCC	1 cut(s)	697
BmgT120I	GGNCC	2 cut(s)	697, 2593
BmiI	GGNNCC	4 cut(s)	283, 1156, 2541, 2655
BmrFI	CCNGG	2 cut(s)	2349, 2658
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	5 cut(s)	283, 399, 586, 1602, 2539
BmtI	GCTAGC	1 cut(s)	2556
BmuI	ACTGGG	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	1749
Bpu1102I	GCTNAGC	1 cut(s)	2175
Bpu14I	TTCGAA	1 cut(s)	1475
BpuEI	CTTGAG	2 cut(s)	980, 1387
Bsa29I	ATCGAT	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	929
BsaI	GGTCTC	2 cut(s)	1330, 2616
BsaJI	CCNNGG	2 cut(s)	285, 2657
Bsc4I	CCNNNNNNNGG	4 cut(s)	1878, 1965, 1997, 2632
Bse118I	RCCGGY	1 cut(s)	1559
Bse1I	ACTGG	2 cut(s)	120, 1860
Bse3DI	GCAATG	4 cut(s)	243, 1263, 1971, 2101
BseBI	CCWGG	2 cut(s)	2349, 2658
BseCI	ATCGAT	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	285, 2657
BseGI	GGATG	6 cut(s)	230, 414, 601, 1079, 1840, 1955
BseLI	CCNNNNNNNGG	4 cut(s)	1878, 1965, 1997, 2632
BseMI	GCAATG	4 cut(s)	243, 1263, 1971, 2101
BseMII	CTCAG	4 cut(s)	226, 312, 2189, 2403
BseNI	ACTGG	2 cut(s)	120, 1860
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	6 cut(s)	251, 597, 760, 1129, 1240, 2461
BsgI	GTGCAG	2 cut(s)	759, 2604
BshFI	GGCC	5 cut(s)	993, 1433, 2347, 2388, 2595
BshVI	ATCGAT	1 cut(s)	219
BsiHKAI	GWGCWC	2 cut(s)	1792, 2063
BsiSI	CCGG	1 cut(s)	1560
BsiWI	CGTACG	1 cut(s)	2642
BslFI	GGGAC	1 cut(s)	865
BslI	CCNNNNNNNGG	4 cut(s)	1878, 1965, 1997, 2632
BsmAI	GTCTC	2 cut(s)	1330, 2616
BsmFI	GGGAC	1 cut(s)	865
BsnI	GGCC	5 cut(s)	993, 1433, 2347, 2388, 2595
Bso31I	GGTCTC	2 cut(s)	1330, 2616
Bsp119I	TTCGAA	1 cut(s)	1475
Bsp1286I	GDGCHC	2 cut(s)	1792, 2063
Bsp143I	GATC	8 cut(s)	275, 333, 1154, 1237, 1585, 1636, 2119, 2390
Bsp1720I	GCTNAGC	1 cut(s)	2175
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	2 cut(s)	81, 1158
BspANI	GGCC	5 cut(s)	993, 1433, 2347, 2388, 2595
BspCNI	CTCAG	4 cut(s)	225, 313, 2188, 2404
BspDI	ATCGAT	1 cut(s)	219
BspLI	GGNNCC	4 cut(s)	283, 1156, 2541, 2655
BspMAI	CTGCAG	2 cut(s)	176, 1147
BspMI	ACCTGC	1 cut(s)	490
BspOI	GCTAGC	1 cut(s)	2556
BspPI	GGATC	3 cut(s)	1149, 1162, 1245
BspQI	GCTCTTC	2 cut(s)	1725, 1855
BspT104I	TTCGAA	1 cut(s)	1475
BspTNI	GGTCTC	2 cut(s)	1330, 2616
BsrDI	GCAATG	4 cut(s)	243, 1263, 1971, 2101
BsrFI	RCCGGY	1 cut(s)	1559
BsrI	ACTGG	2 cut(s)	120, 1860
BssAI	RCCGGY	1 cut(s)	1559
BssECI	CCNNGG	2 cut(s)	285, 2657
BssMI	GATC	8 cut(s)	275, 333, 1154, 1237, 1585, 1636, 2119, 2390
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	2349, 2658
Bst4CI	ACNGT	2 cut(s)	272, 650
Bst6I	CTCTTC	5 cut(s)	1086, 1725, 1732, 1855, 1884
BstAPI	GCANNNNNTGC	2 cut(s)	1673, 2171
BstBAI	YACGTR	1 cut(s)	929
BstBI	TTCGAA	1 cut(s)	1475
BstC8I	GCNNGC	8 cut(s)	480, 513, 1846, 2013, 2063, 2167, 2472, 2554
BstDEI	CTNAG	5 cut(s)	212, 321, 2175, 2412, 2668
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	6 cut(s)	230, 414, 601, 1079, 1840, 1955
BstHHI	GCGC	4 cut(s)	694, 1276, 1298, 2192
BstKTI	GATC	8 cut(s)	278, 336, 1157, 1240, 1588, 1639, 2122, 2393
BstMAI	GTCTC	2 cut(s)	1330, 2616
BstMBI	GATC	8 cut(s)	275, 333, 1154, 1237, 1585, 1636, 2119, 2390
BstMWI	GCNNNNNNNGC	9 cut(s)	470, 479, 773, 1439, 1589, 1673, 1724, 2162, 2171
BstNI	CCWGG	2 cut(s)	2349, 2658
BstNSI	RCATGY	7 cut(s)	203, 1071, 1671, 1774, 1848, 2015, 2581
BstSCI	CCNGG	2 cut(s)	2347, 2656
BstSFI	CTRYAG	3 cut(s)	172, 271, 1143
BstV1I	GCAGC	6 cut(s)	251, 597, 760, 1129, 1240, 2461
BstX2I	RGATCY	3 cut(s)	275, 1154, 1237
BstYI	RGATCY	3 cut(s)	275, 1154, 1237
Bsu15I	ATCGAT	1 cut(s)	219
BsuRI	GGCC	5 cut(s)	993, 1433, 2347, 2388, 2595
BsuTUI	ATCGAT	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	6 cut(s)	230, 414, 601, 1079, 1840, 1955
BtsI	GCAGTG	5 cut(s)	169, 468, 1062, 1792, 2465
BtsIMutI	CAGTG	8 cut(s)	169, 468, 1062, 1112, 1792, 1853, 2253, 2465
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	8 cut(s)	480, 513, 1846, 2013, 2063, 2167, 2472, 2554
CfoI	GCGC	4 cut(s)	694, 1276, 1298, 2192
Cfr10I	RCCGGY	1 cut(s)	1559
Cfr13I	GGNCC	2 cut(s)	697, 2593
ClaI	ATCGAT	1 cut(s)	219
CseI	GACGC	1 cut(s)	1448
Csp6I	GTAC	5 cut(s)	1058, 1245, 1774, 2077, 2643
CviQI	GTAC	5 cut(s)	1058, 1245, 1774, 2077, 2643
DdeI	CTNAG	5 cut(s)	212, 321, 2175, 2412, 2668
DpnI	GATC	8 cut(s)	277, 335, 1156, 1239, 1587, 1638, 2121, 2392
DpnII	GATC	8 cut(s)	275, 333, 1154, 1237, 1585, 1636, 2119, 2390
DraI	TTTAAA	1 cut(s)	1233
DraIII	CACNNNGTG	1 cut(s)	782
EaeI	YGGCCR	1 cut(s)	2386
Eam1104I	CTCTTC	5 cut(s)	1086, 1725, 1732, 1855, 1884
EarI	CTCTTC	5 cut(s)	1086, 1725, 1732, 1855, 1884
Ecl136II	GAGCTC	1 cut(s)	2061
Eco130I	CCWWGG	1 cut(s)	285
Eco147I	AGGCCT	1 cut(s)	2347
Eco24I	GRGCYC	1 cut(s)	2063
Eco31I	GGTCTC	2 cut(s)	1330, 2616
Eco32I	GATATC	1 cut(s)	1263
Eco47I	GGWCC	1 cut(s)	697
Eco53kI	GAGCTC	1 cut(s)	2061
Eco57I	CTGAAG	1 cut(s)	1580
EcoICRI	GAGCTC	1 cut(s)	2061
EcoRI	GAATTC	2 cut(s)	908, 2038
EcoRII	CCWGG	2 cut(s)	2347, 2656
EcoRV	GATATC	1 cut(s)	1263
EcoT14I	CCWWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	2013
EcoT38I	GRGCYC	1 cut(s)	2063
ErhI	CCWWGG	1 cut(s)	285
FaqI	GGGAC	1 cut(s)	865
FauNDI	CATATG	1 cut(s)	2560
FbaI	TGATCA	2 cut(s)	1636, 2119
FblI	GTMKAC	1 cut(s)	864
Fnu4HI	GCNGC	7 cut(s)	81, 265, 586, 774, 1143, 1254, 2475
FokI	GGATG	6 cut(s)	217, 421, 608, 1066, 1847, 1942
FriOI	GRGCYC	1 cut(s)	2063
Fsp4HI	GCNGC	7 cut(s)	81, 265, 586, 774, 1143, 1254, 2475
FspI	TGCGCA	1 cut(s)	1275
GlaI	GCGC	4 cut(s)	693, 1275, 1297, 2191
GluI	GCNGC	7 cut(s)	81, 265, 586, 774, 1143, 1254, 2475
GsuI	CTGGAG	1 cut(s)	1749
HaeIII	GGCC	5 cut(s)	993, 1433, 2347, 2388, 2595
HapII	CCGG	1 cut(s)	1560
HgaI	GACGC	1 cut(s)	1448
HhaI	GCGC	4 cut(s)	694, 1276, 1298, 2192
Hin6I	GCGC	4 cut(s)	692, 1274, 1296, 2190
HinP1I	GCGC	4 cut(s)	692, 1274, 1296, 2190
HincII	GTYRAC	1 cut(s)	2514
HindII	GTYRAC	1 cut(s)	2514
HindIII	AAGCTT	2 cut(s)	480, 2301
HpaI	GTTAAC	1 cut(s)	2514
HpaII	CCGG	1 cut(s)	1560
HphI	GGTGA	2 cut(s)	506, 794
Hpy166II	GTNNAC	5 cut(s)	441, 865, 1044, 1768, 2514
Hpy188I	TCNGA	6 cut(s)	17, 215, 1007, 1204, 1641, 2044
Hpy8I	GTNNAC	5 cut(s)	441, 865, 1044, 1768, 2514
HpyAV	CCTTC	8 cut(s)	145, 967, 1604, 1801, 1954, 2215, 2222, 2644
HpyCH4III	ACNGT	2 cut(s)	272, 650
HpyCH4IV	ACGT	2 cut(s)	746, 928
HpyF10VI	GCNNNNNNNGC	9 cut(s)	470, 479, 773, 1439, 1589, 1673, 1724, 2162, 2171
HpyF3I	CTNAG	5 cut(s)	212, 321, 2175, 2412, 2668
HpySE526I	ACGT	2 cut(s)	746, 928
HspAI	GCGC	4 cut(s)	692, 1274, 1296, 2190
Ksp22I	TGATCA	2 cut(s)	1636, 2119
KspAI	GTTAAC	1 cut(s)	2514
Kzo9I	GATC	8 cut(s)	275, 333, 1154, 1237, 1585, 1636, 2119, 2390
LguI	GCTCTTC	2 cut(s)	1725, 1855
LmnI	GCTCC	5 cut(s)	369, 1187, 2058, 2539, 2664
Lsp1109I	GCAGC	6 cut(s)	251, 597, 760, 1129, 1240, 2461
LweI	GCATC	5 cut(s)	283, 399, 586, 1602, 2539
MaeII	ACGT	2 cut(s)	746, 928
MaeIII	GTNAC	4 cut(s)	1320, 1523, 2248, 2357
MalI	GATC	8 cut(s)	277, 335, 1156, 1239, 1587, 1638, 2121, 2392
MboI	GATC	8 cut(s)	275, 333, 1154, 1237, 1585, 1636, 2119, 2390
MfeI	CAATTG	2 cut(s)	1299, 1761
MflI	RGATCY	3 cut(s)	275, 1154, 1237
MhlI	GDGCHC	2 cut(s)	1792, 2063
MlyI	GAGTC	1 cut(s)	1125
MmeI	TCCRAC	3 cut(s)	608, 1132, 1714
Mph1103I	ATGCAT	1 cut(s)	2013
MslI	CAYNNNNRTG	2 cut(s)	1713, 2493
MspA1I	CMGCKG	1 cut(s)	1142
MspI	CCGG	1 cut(s)	1560
MspR9I	CCNGG	2 cut(s)	2349, 2658
MunI	CAATTG	2 cut(s)	1299, 1761
MvaI	CCWGG	2 cut(s)	2349, 2658
MwoI	GCNNNNNNNGC	9 cut(s)	470, 479, 773, 1439, 1589, 1673, 1724, 2162, 2171
NcoI	CCATGG	1 cut(s)	285
NdeI	CATATG	1 cut(s)	2560
NdeII	GATC	8 cut(s)	275, 333, 1154, 1237, 1585, 1636, 2119, 2390
NheI	GCTAGC	1 cut(s)	2552
NlaIV	GGNNCC	4 cut(s)	283, 1156, 2541, 2655
NmeAIII	GCCGAG	1 cut(s)	2635
NmuCI	GTSAC	3 cut(s)	1523, 2248, 2357
NsbI	TGCGCA	1 cut(s)	1275
NsiI	ATGCAT	1 cut(s)	2013
NspI	RCATGY	7 cut(s)	203, 1071, 1671, 1774, 1848, 2015, 2581
NspV	TTCGAA	1 cut(s)	1475
PacI	TTAATTAA	1 cut(s)	1167
PaeI	GCATGC	2 cut(s)	1848, 2015
PceI	AGGCCT	1 cut(s)	2347
PciI	ACATGT	2 cut(s)	1770, 2577
PciSI	GCTCTTC	2 cut(s)	1725, 1855
PcsI	WCGNNNNNNNCGW	1 cut(s)	515
PfeI	GAWTC	9 cut(s)	12, 192, 216, 980, 1279, 1496, 1940, 2232, 2243
Pfl23II	CGTACG	1 cut(s)	2642
PflMI	CCANNNNNTGG	1 cut(s)	1997
PkrI	GCNGC	7 cut(s)	82, 266, 587, 775, 1144, 1255, 2476
PleI	GAGTC	1 cut(s)	1125
PpsI	GAGTC	1 cut(s)	1125
Ppu21I	YACGTR	1 cut(s)	929
PscI	ACATGT	2 cut(s)	1770, 2577
PshBI	ATTAAT	1 cut(s)	1167
PsiI	TTATAA	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	2063
Psp6I	CCWGG	2 cut(s)	2347, 2656
PspGI	CCWGG	2 cut(s)	2347, 2656
PspLI	CGTACG	1 cut(s)	2642
PspN4I	GGNNCC	4 cut(s)	283, 1156, 2541, 2655
PspPI	GGNCC	2 cut(s)	697, 2593
PsrI	GAACNNNNNNTAC	2 cut(s)	265, 297
PstI	CTGCAG	2 cut(s)	176, 1147
PsuI	RGATCY	3 cut(s)	275, 1154, 1237
PvuII	CAGCTG	1 cut(s)	1142
RsaI	GTAC	5 cut(s)	1059, 1246, 1775, 2078, 2644
RsaNI	GTAC	5 cut(s)	1058, 1245, 1774, 2077, 2643
RseI	CAYNNNNRTG	2 cut(s)	1713, 2493
SacI	GAGCTC	1 cut(s)	2063
SapI	GCTCTTC	2 cut(s)	1725, 1855
SatI	GCNGC	7 cut(s)	81, 265, 586, 774, 1143, 1254, 2475
Sau3AI	GATC	8 cut(s)	275, 333, 1154, 1237, 1585, 1636, 2119, 2390
Sau96I	GGNCC	2 cut(s)	697, 2593
SchI	GAGTC	1 cut(s)	1125
ScrFI	CCNGG	2 cut(s)	2349, 2658
SduI	GDGCHC	2 cut(s)	1792, 2063
SfaNI	GCATC	5 cut(s)	283, 399, 586, 1602, 2539
SfcI	CTRYAG	3 cut(s)	172, 271, 1143
SfuI	TTCGAA	1 cut(s)	1475
SinI	GGWCC	1 cut(s)	697
SmiMI	CAYNNNNRTG	2 cut(s)	1713, 2493
SmlI	CTYRAG	2 cut(s)	995, 1366
SmoI	CTYRAG	2 cut(s)	995, 1366
SphI	GCATGC	2 cut(s)	1848, 2015
SseBI	AGGCCT	1 cut(s)	2347
SsiI	CCGC	2 cut(s)	81, 1158
SstI	GAGCTC	1 cut(s)	2063
StuI	AGGCCT	1 cut(s)	2347
StyD4I	CCNGG	2 cut(s)	2347, 2656
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	272, 650
TaiI	ACGT	2 cut(s)	749, 931
TaqI	TCGA	5 cut(s)	219, 309, 706, 1475, 1606
TaqII	GACCGA	1 cut(s)	540
TatI	WGTACW	2 cut(s)	1773, 2076
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	9 cut(s)	12, 192, 216, 980, 1279, 1496, 1940, 2232, 2243
TscAI	CASTG	8 cut(s)	176, 475, 1069, 1119, 1792, 1860, 2253, 2472
TseFI	GTSAC	3 cut(s)	1523, 2248, 2357
TseI	GCWGC	6 cut(s)	264, 585, 773, 1142, 1253, 2474
Tsp45I	GTSAC	3 cut(s)	1523, 2248, 2357
TspDTI	ATGAA	8 cut(s)	35, 905, 909, 1530, 1697, 1851, 1944, 2410
TspGWI	ACGGA	2 cut(s)	2301, 2352
TspRI	CASTG	8 cut(s)	176, 475, 1069, 1119, 1792, 1860, 2253, 2472
Van91I	CCANNNNNTGG	1 cut(s)	1997
VpaK11BI	GGWCC	1 cut(s)	697
VspI	ATTAAT	1 cut(s)	1167
XapI	RAATTY	7 cut(s)	114, 343, 908, 1518, 1704, 2038, 2317
XbaI	TCTAGA	2 cut(s)	1489, 1792
XceI	RCATGY	7 cut(s)	203, 1071, 1671, 1774, 1848, 2015, 2581
XmiI	GTMKAC	1 cut(s)	864
Zsp2I	ATGCAT	1 cut(s)	2013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.