Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0012277

Physical Location & Seq

Genomic Coordinates Reverse (-)

2721770 .. 2724624

Gene Structure 2855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G003410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2709 bp

ATGATAATCTACCCAAAATCCCAAATGCTTACACGAATCCGAATGAAATCTCTCCTCAATCCCAAAATCTCACTCTCCACTCTCAAATCCATATCCTCCCTTGCCGCCGTTAAAAACCCATCATTTTTCCCCATTGAAAACCCCGAAATTCCCAGTCTTTTTGACCCCTTCCAATTCCTCAATGATTACACAAAATCAACTCACTGCAGTATTACAAACACTAGAATCTTACATGCCCACTTTCTCAGAATCGATTTACTCCCATCCAATGTCGCCATTGCGAACTCTTTACTTGGCTGCTACTGTAGATCTGGTTCCATGGCAGATGCACTCCACCTGTTCGATGTAATTCCTGAGAGAAATGTGATCTCTTGGAATTTGATGGTTTCGGGTTATAACAGGAGCTCGATGTTTGAGAATTCATGGGGTGTTTTCTGCAGGATGCATTGTTCGGGTTTTGAGCCTGATGAGTTTACTTATGGGAGTGTTCTTTCGGCTTGCACTGCCTTGCAAGCTTCTAGTTTGGGTGAGCAGGTTTATTCGCTTGCAACGAAAAATGGGTTCTTTAGTAGTGATTATGTTCGGTCTGGAATGATAGACTTGTTTGCGAAAAGTGGCAGCTTTGAGGATGCTTTGAGGGTGTTTCATGATGTTTCGTGTTGGAATGTTGTGATTTGGAACGGTGTTATCTCTGGGGCTGTGAGAAATGGAGAGAACGGAGTTGCGCTGGACCTTTTTCGACAAATGTGTTGTGGGTTTTTGTTGCCGAATAGCTTTACGTTTTCTAGTGTTTTGACTGCCTGTGCTGCACTTGGTGAAATTGGGATCGGGAGGGAGGTTCAAGGATGGGTAATTAAGCGTGGTGCAGAAGATGTGTTTGTTGGGACTGCCATTGTAGACTTATATTCCAAATGTGGAAAGATGAATGAAGCTGTCAAGGAATTCTCCCGTATGCCAACACGCAATGTGGTGTCTTGGACTGCCATCATTTCTGGTTTTGTGGGGAAGGACGATTCTATCTCTGGCCTCAAGTTTTTCAGAGAAATGAGAAGAATGGGAGAGGAAATAAATAAGTTTACTATTACTAGCGTACTCACTGCATGTGCTAAACCATCCATGAGTGAAGAGGCAATCCAAATCCATTCACTGATATTAAAATCTGGACTCTATTCAGCTGCAGAAGTTGGATCCGCTTTAATTAATGCGTATTCAAAAATAGGAGCTGTTGATGTATCTGAAATGGTGTTCAGGGAGATAAGAACTTTAAAGGATCTGGGTACATGGGCTGCAATGATATCTTCTTTTGCGCAGAATCAAAATCCTGAAAGCGCAATTGGAGTTTTCCAGAGAATGTTACAGGAAAGTGTGAGACCAGATAAGTTTTCTACTTCTAGTGTCTTGAGTATTATAGACTATTTAGGTGTAGGGAGGCAGATACATAGCTACACTCTTAAAGTTGGGTTGGCCTTTGACGCTTCTGTTGGTAGTTCCCTTTCCACAATGTATTCAAAATGTGATAGTCTAGAGGAATCTTACAAGGCATTTCAGCAAATTCGTGACAAAGACAATGTTTCATGGGCTTCAATGATTGCCGGTTTTTTAGAACATGGCTTTGCAGATCAAGCCCTTCAGTTATATCGAGAGATGCCATGCAAAGAAATAATACCTGATCAGATGACTTTAGCTGCAATTCTAACTGCATGTTCTGCTTCTCGTTCCTTACTGATTGGTAAGGAAATTCATGGTCATGCTCTTCGTGCTGGAGTTGGAAGAGATGTAGTTGTTGGTGGTGCAATTGTGAACATGTACTCAAAATGCAGTGCTCTAGAATTGGCAAGGAAGGTGTTTGATATGCTTCCTCAAAAGGATGAAGTTGCATGCTCTTCACTGGTTTCAGGTTATGCCCAAAATGGGTGCATTGAAGAGGCACTTTTGCTGTTCCATTATATGCTAATGGCTGATTTGACCATTGATTCCTTCACAATTTCATCCATTCTTGGGGTCATTGCACCTTTGAATAACCCAAGTATTGGAACTCAAATGCATGCCCACATCACAAAAATTGGTTTAAATTCAGATGTTTCTGTTGGGAGCTCACTAGTGAGAATGTACTCAAAATGTGGAAGCATTGAAGATTGCCAGAAATCATTTGATCAAATCGAGAACCCTGACTTAATTTGCTGGACAGCTATGATTGCAAGCTATGCTCAGCATGGGAAAGGCGCAGAGGCTTTAAGAGGCTACGAGCTTTTGAAGGAAGAAGGAATCAAACCTGATTCAGTGACTTTTGTTGCAGTTTTATATGCTTGTAGCCATAACGGATTGGTTGACGAAGCTTATTTCTACTTAAATTCAATGGCTACTGATTACGGAATTAGGCCTGGTTATCGTCACTATGCCTGTATGGTTGATGTTCTTGGCCGATCAGGGAGGTTGAAAGAGGCTGAGAGGTTCATTATCAATATGCCTATTGAACCTAGTGGTTTAATATGGGGAACACTGCTTGCTGCTTGTGTGATACACAGAGATGTAGAGCTTGGAAAGTTAACAGCTAAAAAGATTATGGATTTGGAGCCATGTGATGCTAGCACATATGTTTCCCTTTCAAACATGTGTGCAGATTTGGGCCTGTGGGAAGAAGCCGAGCAGATTAGAGACCAGATGAGGGGAAATCGTACGAGGAAGGAACCTGGGTGGAGCTTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

902

Amino Acids

99.27

Weight (kDa)

5.97

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	120 - 167	6.5e-09	PPR repeat family
PPR_2	PF13041	222 - 269	8.8e-09	PPR repeat family
PPR_2	PF13041	321 - 370	1.7e-08	PPR repeat family
PPR_2	PF13041	522 - 568	1.5e-06	PPR repeat family
PPR_2	PF13041	723 - 771	1.2e-08	PPR repeat family
E_motif	PF20431	841 - 902	9.3e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74600
fragaria_vesca	FvH4_5g15030
malus_domestica	MD06G1192600.v1.1 MD14G1199400.v1.1
prunus_persica	Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1
pyrus_communis	pycom06g17070 pycom14g16530
rosa_chinensis	RchiOBHm_Chr7g0181221
rosa_laevigata	RLG00000005205
rosa_multiflora	Rmu_sc0001147.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272190
rosa_rugosa	Rorug06G0439600
rosa_samantha	Rh7AG041400 Rh7BG040700 Rh7CG042900 Rh7DG041200
rosa_wichuraiana	Rw7G003410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
Acc16I	TGCGCA	1 cut(s)	1308
Acc36I	ACCTGC	1 cut(s)	523
AccB7I	CCANNNNNTGG	1 cut(s)	2030
AccI	GTMKAC	1 cut(s)	897
AciI	CCGC	2 cut(s)	105, 1191
AclWI	GGATC	4 cut(s)	833, 1182, 1195, 1278
AcoI	YGGCCR	1 cut(s)	2419
AcsI	RAATTY	8 cut(s)	147, 376, 418, 941, 1551, 1737, 2071, 2350
AcuI	CTGAAG	1 cut(s)	1613
AdeI	CACNNNGTG	1 cut(s)	815
AfaI	GTAC	5 cut(s)	1092, 1279, 1808, 2111, 2677
AfiI	CCNNNNNNNGG	4 cut(s)	1911, 1998, 2030, 2665
AflIII	ACRYGT	2 cut(s)	1803, 2610
AhlI	ACTAGT	1 cut(s)	2098
AjnI	CCWGG	2 cut(s)	2380, 2689
AjuI	GAANNNNNNNTTGG	2 cut(s)	1317, 1349
AloI	GAACNNNNNNTCC	2 cut(s)	433, 465
Alw21I	GWGCWC	3 cut(s)	407, 1825, 2096
Alw26I	GTCTC	2 cut(s)	1363, 2649
AlwI	GGATC	4 cut(s)	833, 1182, 1195, 1278
AoxI	GGCC	5 cut(s)	1024, 1464, 2378, 2419, 2626
ApeKI	GCWGC	7 cut(s)	297, 618, 806, 1175, 1286, 1685, 2507
ApoI	RAATTY	8 cut(s)	147, 376, 418, 941, 1551, 1737, 2071, 2350
AseI	ATTAAT	1 cut(s)	1200
AspLEI	GCGC	4 cut(s)	727, 1309, 1331, 2225
AspS9I	GGNCC	2 cut(s)	730, 2626
AsuHPI	GGTGA	2 cut(s)	539, 827
AsuNHI	GCTAGC	1 cut(s)	2585
AvaII	GGWCC	1 cut(s)	730
BamHI	GGATCC	1 cut(s)	1187
BanII	GRGCYC	2 cut(s)	407, 2096
Bbv12I	GWGCWC	3 cut(s)	407, 1825, 2096
BbvI	GCAGC	7 cut(s)	284, 630, 793, 1162, 1273, 1672, 2494
BccI	CCATC	6 cut(s)	127, 271, 376, 840, 992, 1120
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	2 cut(s)	2382, 2691
BclI	TGATCA	2 cut(s)	1669, 2152
BcoDI	GTCTC	2 cut(s)	1363, 2649
BcuI	ACTAGT	1 cut(s)	2098
BfmI	CTRYAG	4 cut(s)	205, 304, 436, 1176
BfuAI	ACCTGC	1 cut(s)	523
BglII	AGATCT	1 cut(s)	308
BisI	GCNGC	8 cut(s)	105, 298, 619, 807, 1176, 1287, 1686, 2508
BlpI	GCTNAGC	1 cut(s)	2208
BlsI	GCNGC	8 cut(s)	106, 299, 620, 808, 1177, 1288, 1687, 2509
Bme1390I	CCNGG	2 cut(s)	2382, 2691
Bme18I	GGWCC	1 cut(s)	730
BmgT120I	GGNCC	2 cut(s)	730, 2626
BmiI	GGNNCC	4 cut(s)	316, 1189, 2574, 2688
BmrFI	CCNGG	2 cut(s)	2382, 2691
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	5 cut(s)	316, 432, 619, 1635, 2572
BmtI	GCTAGC	1 cut(s)	2589
BmuI	ACTGGG	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	1782
Bpu1102I	GCTNAGC	1 cut(s)	2208
BpuEI	CTTGAG	2 cut(s)	1013, 1420
Bsa29I	ATCGAT	1 cut(s)	252
BsaI	GGTCTC	2 cut(s)	1363, 2649
BsaJI	CCNNGG	2 cut(s)	318, 2690
Bsc4I	CCNNNNNNNGG	4 cut(s)	1911, 1998, 2030, 2665
Bse118I	RCCGGY	1 cut(s)	1592
Bse1I	ACTGG	2 cut(s)	153, 1893
Bse3DI	GCAATG	4 cut(s)	276, 970, 1296, 2004
BseBI	CCWGG	2 cut(s)	2382, 2691
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	318, 2690
BseGI	GGATG	7 cut(s)	263, 447, 634, 851, 1112, 1873, 1988
BseLI	CCNNNNNNNGG	4 cut(s)	1911, 1998, 2030, 2665
BseMI	GCAATG	4 cut(s)	276, 970, 1296, 2004
BseMII	CTCAG	4 cut(s)	259, 345, 2222, 2436
BseNI	ACTGG	2 cut(s)	153, 1893
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	7 cut(s)	284, 630, 793, 1162, 1273, 1672, 2494
BsgI	GTGCAG	3 cut(s)	792, 885, 2637
BshFI	GGCC	5 cut(s)	1026, 1466, 2380, 2421, 2628
BshVI	ATCGAT	1 cut(s)	252
BsiHKAI	GWGCWC	3 cut(s)	407, 1825, 2096
BsiSI	CCGG	1 cut(s)	1593
BsiWI	CGTACG	1 cut(s)	2675
BslFI	GGGAC	1 cut(s)	898
BslI	CCNNNNNNNGG	4 cut(s)	1911, 1998, 2030, 2665
BsmAI	GTCTC	2 cut(s)	1363, 2649
BsmFI	GGGAC	1 cut(s)	898
BsnI	GGCC	5 cut(s)	1026, 1466, 2380, 2421, 2628
Bso31I	GGTCTC	2 cut(s)	1363, 2649
Bsp1286I	GDGCHC	3 cut(s)	407, 1825, 2096
Bsp143I	GATC	9 cut(s)	308, 366, 825, 1187, 1270, 1618, 1669, 2152, 2423
Bsp1720I	GCTNAGC	1 cut(s)	2208
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	2 cut(s)	105, 1191
BspANI	GGCC	5 cut(s)	1026, 1466, 2380, 2421, 2628
BspCNI	CTCAG	4 cut(s)	258, 346, 2221, 2437
BspDI	ATCGAT	1 cut(s)	252
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	4 cut(s)	316, 1189, 2574, 2688
BspMAI	CTGCAG	3 cut(s)	209, 440, 1180
BspMI	ACCTGC	1 cut(s)	523
BspOI	GCTAGC	1 cut(s)	2589
BspPI	GGATC	4 cut(s)	833, 1182, 1195, 1278
BspQI	GCTCTTC	2 cut(s)	1758, 1888
BspTNI	GGTCTC	2 cut(s)	1363, 2649
BsrDI	GCAATG	4 cut(s)	276, 970, 1296, 2004
BsrFI	RCCGGY	1 cut(s)	1592
BsrI	ACTGG	2 cut(s)	153, 1893
BssAI	RCCGGY	1 cut(s)	1592
BssECI	CCNNGG	2 cut(s)	318, 2690
BssMI	GATC	9 cut(s)	308, 366, 825, 1187, 1270, 1618, 1669, 2152, 2423
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	2382, 2691
Bst4CI	ACNGT	2 cut(s)	305, 683
Bst6I	CTCTTC	5 cut(s)	1119, 1758, 1765, 1888, 1917
BstAPI	GCANNNNNTGC	2 cut(s)	1706, 2204
BstC8I	GCNNGC	8 cut(s)	499, 513, 546, 1879, 2046, 2200, 2505, 2587
BstDEI	CTNAG	5 cut(s)	245, 354, 2208, 2445, 2701
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	7 cut(s)	263, 447, 634, 851, 1112, 1873, 1988
BstHHI	GCGC	4 cut(s)	727, 1309, 1331, 2225
BstKTI	GATC	9 cut(s)	311, 369, 828, 1190, 1273, 1621, 1672, 2155, 2426
BstMAI	GTCTC	2 cut(s)	1363, 2649
BstMBI	GATC	9 cut(s)	308, 366, 825, 1187, 1270, 1618, 1669, 2152, 2423
BstMWI	GCNNNNNNNGC	9 cut(s)	503, 512, 806, 1472, 1622, 1706, 1757, 2195, 2204
BstNI	CCWGG	2 cut(s)	2382, 2691
BstNSI	RCATGY	7 cut(s)	236, 1104, 1704, 1807, 1881, 2048, 2614
BstSCI	CCNGG	2 cut(s)	2380, 2689
BstSFI	CTRYAG	4 cut(s)	205, 304, 436, 1176
BstV1I	GCAGC	7 cut(s)	284, 630, 793, 1162, 1273, 1672, 2494
BstX2I	RGATCY	3 cut(s)	308, 1187, 1270
BstYI	RGATCY	3 cut(s)	308, 1187, 1270
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	5 cut(s)	1026, 1466, 2380, 2421, 2628
BsuTUI	ATCGAT	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	7 cut(s)	263, 447, 634, 851, 1112, 1873, 1988
BtsI	GCAGTG	5 cut(s)	202, 501, 1095, 1825, 2498
BtsIMutI	CAGTG	8 cut(s)	202, 501, 1095, 1145, 1825, 1886, 2286, 2498
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	8 cut(s)	499, 513, 546, 1879, 2046, 2200, 2505, 2587
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	4 cut(s)	727, 1309, 1331, 2225
Cfr10I	RCCGGY	1 cut(s)	1592
Cfr13I	GGNCC	2 cut(s)	730, 2626
ClaI	ATCGAT	1 cut(s)	252
CseI	GACGC	1 cut(s)	1481
Csp6I	GTAC	5 cut(s)	1091, 1278, 1807, 2110, 2676
CviQI	GTAC	5 cut(s)	1091, 1278, 1807, 2110, 2676
DdeI	CTNAG	5 cut(s)	245, 354, 2208, 2445, 2701
DpnI	GATC	9 cut(s)	310, 368, 827, 1189, 1272, 1620, 1671, 2154, 2425
DpnII	GATC	9 cut(s)	308, 366, 825, 1187, 1270, 1618, 1669, 2152, 2423
DraI	TTTAAA	2 cut(s)	1266, 2070
DraIII	CACNNNGTG	1 cut(s)	815
EaeI	YGGCCR	1 cut(s)	2419
Eam1104I	CTCTTC	5 cut(s)	1119, 1758, 1765, 1888, 1917
EarI	CTCTTC	5 cut(s)	1119, 1758, 1765, 1888, 1917
Ecl136II	GAGCTC	2 cut(s)	405, 2094
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	2380
Eco24I	GRGCYC	2 cut(s)	407, 2096
Eco31I	GGTCTC	2 cut(s)	1363, 2649
Eco32I	GATATC	1 cut(s)	1296
Eco47I	GGWCC	1 cut(s)	730
Eco53kI	GAGCTC	2 cut(s)	405, 2094
Eco57I	CTGAAG	1 cut(s)	1613
EcoICRI	GAGCTC	2 cut(s)	405, 2094
EcoRI	GAATTC	2 cut(s)	418, 941
EcoRII	CCWGG	2 cut(s)	2380, 2689
EcoRV	GATATC	1 cut(s)	1296
EcoT14I	CCWWGG	1 cut(s)	318
EcoT22I	ATGCAT	2 cut(s)	447, 2046
EcoT38I	GRGCYC	2 cut(s)	407, 2096
ErhI	CCWWGG	1 cut(s)	318
FalI	AAGNNNNNCTT	2 cut(s)	1914, 1946
FaqI	GGGAC	1 cut(s)	898
FauNDI	CATATG	1 cut(s)	2593
FbaI	TGATCA	2 cut(s)	1669, 2152
FblI	GTMKAC	1 cut(s)	897
Fnu4HI	GCNGC	8 cut(s)	105, 298, 619, 807, 1176, 1287, 1686, 2508
FokI	GGATG	7 cut(s)	250, 454, 641, 858, 1099, 1880, 1975
FriOI	GRGCYC	2 cut(s)	407, 2096
Fsp4HI	GCNGC	8 cut(s)	105, 298, 619, 807, 1176, 1287, 1686, 2508
FspI	TGCGCA	1 cut(s)	1308
GlaI	GCGC	4 cut(s)	726, 1308, 1330, 2224
GluI	GCNGC	8 cut(s)	105, 298, 619, 807, 1176, 1287, 1686, 2508
GsuI	CTGGAG	1 cut(s)	1782
HaeIII	GGCC	5 cut(s)	1026, 1466, 2380, 2421, 2628
HapII	CCGG	1 cut(s)	1593
HgaI	GACGC	1 cut(s)	1481
HhaI	GCGC	4 cut(s)	727, 1309, 1331, 2225
Hin6I	GCGC	4 cut(s)	725, 1307, 1329, 2223
HinP1I	GCGC	4 cut(s)	725, 1307, 1329, 2223
HincII	GTYRAC	2 cut(s)	2329, 2547
HindII	GTYRAC	2 cut(s)	2329, 2547
HindIII	AAGCTT	2 cut(s)	513, 2334
HpaI	GTTAAC	1 cut(s)	2547
HpaII	CCGG	1 cut(s)	1593
HphI	GGTGA	2 cut(s)	539, 827
Hpy166II	GTNNAC	6 cut(s)	474, 898, 1077, 1801, 2329, 2547
Hpy188I	TCNGA	6 cut(s)	41, 248, 1040, 1237, 1674, 2077
Hpy8I	GTNNAC	6 cut(s)	474, 898, 1077, 1801, 2329, 2547
HpyAV	CCTTC	8 cut(s)	178, 1000, 1637, 1834, 1987, 2248, 2255, 2677
HpyCH4III	ACNGT	2 cut(s)	305, 683
HpyCH4IV	ACGT	1 cut(s)	779
HpyF10VI	GCNNNNNNNGC	9 cut(s)	503, 512, 806, 1472, 1622, 1706, 1757, 2195, 2204
HpyF3I	CTNAG	5 cut(s)	245, 354, 2208, 2445, 2701
HpySE526I	ACGT	1 cut(s)	779
HspAI	GCGC	4 cut(s)	725, 1307, 1329, 2223
Ksp22I	TGATCA	2 cut(s)	1669, 2152
KspAI	GTTAAC	1 cut(s)	2547
Kzo9I	GATC	9 cut(s)	308, 366, 825, 1187, 1270, 1618, 1669, 2152, 2423
LguI	GCTCTTC	2 cut(s)	1758, 1888
LmnI	GCTCC	5 cut(s)	402, 1220, 2091, 2572, 2697
Lsp1109I	GCAGC	7 cut(s)	284, 630, 793, 1162, 1273, 1672, 2494
LweI	GCATC	5 cut(s)	316, 432, 619, 1635, 2572
MaeII	ACGT	1 cut(s)	779
MaeIII	GTNAC	4 cut(s)	1353, 1556, 2281, 2390
MalI	GATC	9 cut(s)	310, 368, 827, 1189, 1272, 1620, 1671, 2154, 2425
MboI	GATC	9 cut(s)	308, 366, 825, 1187, 1270, 1618, 1669, 2152, 2423
MfeI	CAATTG	2 cut(s)	1332, 1794
MflI	RGATCY	3 cut(s)	308, 1187, 1270
MhlI	GDGCHC	3 cut(s)	407, 1825, 2096
MlyI	GAGTC	1 cut(s)	1158
MmeI	TCCRAC	3 cut(s)	641, 1165, 1747
Mph1103I	ATGCAT	2 cut(s)	447, 2046
MslI	CAYNNNNRTG	2 cut(s)	1746, 2526
MspA1I	CMGCKG	1 cut(s)	1175
MspI	CCGG	1 cut(s)	1593
MspR9I	CCNGG	2 cut(s)	2382, 2691
MunI	CAATTG	2 cut(s)	1332, 1794
MvaI	CCWGG	2 cut(s)	2382, 2691
MwoI	GCNNNNNNNGC	9 cut(s)	503, 512, 806, 1472, 1622, 1706, 1757, 2195, 2204
NcoI	CCATGG	1 cut(s)	318
NdeI	CATATG	1 cut(s)	2593
NdeII	GATC	9 cut(s)	308, 366, 825, 1187, 1270, 1618, 1669, 2152, 2423
NheI	GCTAGC	1 cut(s)	2585
NlaIV	GGNNCC	4 cut(s)	316, 1189, 2574, 2688
NmeAIII	GCCGAG	1 cut(s)	2668
NmuCI	GTSAC	3 cut(s)	1556, 2281, 2390
NsbI	TGCGCA	1 cut(s)	1308
NsiI	ATGCAT	2 cut(s)	447, 2046
NspI	RCATGY	7 cut(s)	236, 1104, 1704, 1807, 1881, 2048, 2614
PacI	TTAATTAA	1 cut(s)	1200
PaeI	GCATGC	2 cut(s)	1881, 2048
PagI	TCATGA	1 cut(s)	646
PceI	AGGCCT	1 cut(s)	2380
PciI	ACATGT	2 cut(s)	1803, 2610
PciSI	GCTCTTC	2 cut(s)	1758, 1888
PcsI	WCGNNNNNNNCGW	1 cut(s)	548
PfeI	GAWTC	9 cut(s)	36, 225, 249, 1013, 1312, 1529, 1973, 2265, 2276
Pfl23II	CGTACG	1 cut(s)	2675
PflMI	CCANNNNNTGG	1 cut(s)	2030
PkrI	GCNGC	8 cut(s)	106, 299, 620, 808, 1177, 1288, 1687, 2509
PleI	GAGTC	1 cut(s)	1158
PpsI	GAGTC	1 cut(s)	1158
PscI	ACATGT	2 cut(s)	1803, 2610
PshBI	ATTAAT	1 cut(s)	1200
PsiI	TTATAA	1 cut(s)	396
Psp124BI	GAGCTC	2 cut(s)	407, 2096
Psp6I	CCWGG	2 cut(s)	2380, 2689
PspGI	CCWGG	2 cut(s)	2380, 2689
PspLI	CGTACG	1 cut(s)	2675
PspN4I	GGNNCC	4 cut(s)	316, 1189, 2574, 2688
PspPI	GGNCC	2 cut(s)	730, 2626
PsrI	GAACNNNNNNTAC	2 cut(s)	298, 330
PstI	CTGCAG	3 cut(s)	209, 440, 1180
PsuI	RGATCY	3 cut(s)	308, 1187, 1270
PvuII	CAGCTG	1 cut(s)	1175
RsaI	GTAC	5 cut(s)	1092, 1279, 1808, 2111, 2677
RsaNI	GTAC	5 cut(s)	1091, 1278, 1807, 2110, 2676
RseI	CAYNNNNRTG	2 cut(s)	1746, 2526
SacI	GAGCTC	2 cut(s)	407, 2096
SapI	GCTCTTC	2 cut(s)	1758, 1888
SatI	GCNGC	8 cut(s)	105, 298, 619, 807, 1176, 1287, 1686, 2508
Sau3AI	GATC	9 cut(s)	308, 366, 825, 1187, 1270, 1618, 1669, 2152, 2423
Sau96I	GGNCC	2 cut(s)	730, 2626
SchI	GAGTC	1 cut(s)	1158
ScrFI	CCNGG	2 cut(s)	2382, 2691
SduI	GDGCHC	3 cut(s)	407, 1825, 2096
SfaNI	GCATC	5 cut(s)	316, 432, 619, 1635, 2572
SfcI	CTRYAG	4 cut(s)	205, 304, 436, 1176
SinI	GGWCC	1 cut(s)	730
SmiMI	CAYNNNNRTG	2 cut(s)	1746, 2526
SmlI	CTYRAG	2 cut(s)	1028, 1399
SmoI	CTYRAG	2 cut(s)	1028, 1399
SpeI	ACTAGT	1 cut(s)	2098
SphI	GCATGC	2 cut(s)	1881, 2048
SseBI	AGGCCT	1 cut(s)	2380
SsiI	CCGC	2 cut(s)	105, 1191
SstI	GAGCTC	2 cut(s)	407, 2096
StuI	AGGCCT	1 cut(s)	2380
StyD4I	CCNGG	2 cut(s)	2380, 2689
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	305, 683
TaiI	ACGT	1 cut(s)	782
TaqI	TCGA	6 cut(s)	252, 342, 407, 739, 1639, 2160
TaqII	GACCGA	1 cut(s)	573
TatI	WGTACW	2 cut(s)	1806, 2109
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	9 cut(s)	36, 225, 249, 1013, 1312, 1529, 1973, 2265, 2276
TscAI	CASTG	8 cut(s)	209, 508, 1102, 1152, 1825, 1893, 2286, 2505
TseFI	GTSAC	3 cut(s)	1556, 2281, 2390
TseI	GCWGC	7 cut(s)	297, 618, 806, 1175, 1286, 1685, 2507
Tsp45I	GTSAC	3 cut(s)	1556, 2281, 2390
TspGWI	ACGGA	3 cut(s)	732, 2334, 2385
TspRI	CASTG	8 cut(s)	209, 508, 1102, 1152, 1825, 1893, 2286, 2505
Van91I	CCANNNNNTGG	1 cut(s)	2030
VpaK11BI	GGWCC	1 cut(s)	730
VspI	ATTAAT	1 cut(s)	1200
XapI	RAATTY	8 cut(s)	147, 376, 418, 941, 1551, 1737, 2071, 2350
XbaI	TCTAGA	2 cut(s)	1522, 1825
XceI	RCATGY	7 cut(s)	236, 1104, 1704, 1807, 1881, 2048, 2614
XmiI	GTMKAC	1 cut(s)	897
Zsp2I	ATGCAT	2 cut(s)	447, 2046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.