Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0012277

Physical Location & Seq

Genomic Coordinates Reverse (-)

2753876 .. 2756266

Gene Structure 2391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG041400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGGAAGATGCACTCCACCTGTTCGATGTAATTCCTGAGAGAAATGTGATCTCTTGGAATTTGATGGTTTCGGGTTATAACAGGAGCTCGATGTTTGAGAATTCGTGGGGAGTTTTCTGCAGGATGCATTGTTCGGGTTTTGAGCCTGATGAGTTTACTTATGGGAGTGTTCTTTCGGCTTGCACTGCCTTGCAAGCTTCTAGTTTGGGTGAGCAGGTTTATTCGCTTGCAATGAAAAATGGGTTCTTTAGTAGTGATTATGTTCGGTCTGGATTGATAGACTTGTTTGCGAAAAGTGGCAGCTTTGAGGATGCTTTGAGGGTGTTTCATGATGTTTCGTGTTGGAATGTTGTGATTTGGAACGGTGTTATCTCTGGGGCTGTGAGAAATGGAGAGAACGGAGTTGCGCTGGACCTTTTTCGACAAATGTGTTGTGGGTTTTTGTTGCCGAATAGCTTTACGTTTTCTAGTGTTTTGACTGCCTGTGCTGCACTTGGTGAAATTGGGATCGGGAGGGAGGTTCAAGGGTGGGTAATTAAGCGTGGTGCAGAAGATGTGTTTGTTGGGACTGCCATTGTAGACTTATATTCCAAATGTGGAAAGATGAATGAAGCTGTCAAGGAATTCTCCCGTATGCCAACACGTAATGTGGTGTCTTGGACTGCCATCATTTCTGGTTTTGTGGGGAAGGACGATTCTATCTCTGGCCTCAAGTTTTTCAGAGAAATGAGAAGAATGGGAGAGGAAATAAATAAGTTTACTATTACTAGCGTACTCACTGCATGTGCTAAACCATCCATGAGTGAAGAGGCAATCCAAATCCATTCACTGATATTAAAATCTGGACTCTATTCAGCTGCAGAAGTTGGATCCGCTTTAATTAATGCGTATTCAAAAATAGGAGCTGTTGATGTATCTGAAATGGTGTTCAGGGAGATAAGAACTTTAAAGGATCTGGGTACATGGGCTGCAATGATATCTTCTTTTGCGCAGAATCAAAATCCTGAAAGCGCAATTGGAGTTTTCCAGAGAATGTTACAGGAAAGTGTGAGACCAGATAAGTTTTCTACTTCTAGTGTCTTGAGTATTATAGACTATTTAGGTGTAGGGAGGCAGATACATAGCTACACTCTTAAAGTTGGGTTGGCCTTTGACGCTTCTGTTGGTAGTTCCCTTTCCACAATGTATTCGAAATGCGATAGTCTAGAGGAATCTTACAAGGCATTTCAGCAAATTCGTGACAAAGACAATGTTTCATGGGCTTCAATGATTGCCGGTTTTTTAGAACATGGCTTTGCAGATCAAGCCCTTCAGTTATATCGAGAGATGCCATGCAAAGAAATAATACCTGATCAGATGACTTTAGCTGCAATTCTAACTGCATGTTCTGCTTCTCGTTCCTTACTGATTGGTAAGGAAATTCATGGTCATGCTCTTCGTGCTGGAGTTGGAAGAGATGTAGTTGTTGGTGGTGCAATTGTGAACATGTACTCAAAATGCAGTGCTCTAGAATTGGCAAGGAAGGTGTTTGATATGCTTCCTCAAAAGGATGAAGTTGCATGCTCTTCACTGGTTTCAGGTTATGCCCAAAATGGGTGCATTGAAGAGGCACTTTTGCTGTTCCATTATATGCTAATGGCTGATTTGACCATTGATTCCTTCACAATTTCATCCATTCTTGGGGTCATTGCACCTTTGAATAACCCAAGTATTGGAACTCAAATGCATGCCCACATCACAAAAATTGGTTTGAATTCAGATGTTTCTGTTGGGAGCTCACTAGTGAGAATGTACTCAAAATGTGGAAGCATTGAAGATTGCCAGAAATCATTTGATCAAATCGAGAACCCTGACTTAATTTGCTGGACAGCTATGATTGCAAGCTATGCTCAGCATGGGAAAGGCGCAGAGGCTTTAAGAGGCTACGAGCTTTTGAAGGAAGAAGGAATCAAACCTGATTCAGTGACTTTTGTTGCAGTTTTATATGCTTGTAGCCATAACGGATTGGTTGACGAAGCTTATTTCTACTTAAATTCAATGGCTACTGATTACGGAATCAGGCCTGGTTATCGTCACTATGCCTGTATGGTTGATGTTCTTGGCCGATCAGGGAGGTTGAAAGAGGCTGAGAGGTTCATTATCAATATGCCTATTGAACCTAGTGGTTTAATATGGGGAACACTGCTTGCTGCTTGTGTGATACACAGAGATGTAGAGCTTGGAAAGTTAACAGCTAAAAAGATTATGGATTTGGAGCCATGTGATGCTAGCACATATGTTTCCCTTTCAAACATGTGTGCAGATTTGGGCCTGTGGGAAGAAGCCGAGCAGATTAGAGACCAGATGAGGGGAAATCGTACGAGGAAGGAACCTGGGTGGAGCTTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

796

Amino Acids

87.46

Weight (kDa)

5.43

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	14 - 61	5.6e-09	PPR repeat family
PPR_2	PF13041	116 - 163	7.6e-09	PPR repeat family
PPR_2	PF13041	215 - 264	1.5e-08	PPR repeat family
PPR_2	PF13041	416 - 462	1.3e-06	PPR repeat family
PPR_2	PF13041	617 - 665	1e-08	PPR repeat family
E_motif	PF20431	735 - 796	7.9e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74600
fragaria_vesca	FvH4_5g15030
malus_domestica	MD06G1192600.v1.1 MD14G1199400.v1.1
prunus_persica	Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1 Prupe.5G192400_v2.0.a1
pyrus_communis	pycom06g17070 pycom14g16530
rosa_chinensis	RchiOBHm_Chr7g0181221
rosa_laevigata	RLG00000005205
rosa_multiflora	Rmu_sc0001147.1_g000014
rosa_roxburghii	Rroxscaffold_3G00272190
rosa_rugosa	Rorug06G0439600
rosa_samantha	Rh7AG041400 Rh7BG040700 Rh7CG042900 Rh7DG041200
rosa_wichuraiana	Rw7G003410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
Acc16I	TGCGCA	1 cut(s)	990
Acc36I	ACCTGC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	1712
AccI	GTMKAC	1 cut(s)	579
AciI	CCGC	1 cut(s)	873
AclWI	GGATC	4 cut(s)	515, 864, 877, 960
AcoI	YGGCCR	1 cut(s)	2101
AcsI	RAATTY	7 cut(s)	58, 100, 623, 1233, 1419, 1753, 2032
AcuI	CTGAAG	1 cut(s)	1295
AdeI	CACNNNGTG	1 cut(s)	497
AfaI	GTAC	5 cut(s)	774, 961, 1490, 1793, 2359
AfiI	CCNNNNNNNGG	4 cut(s)	1593, 1680, 1712, 2347
AflIII	ACRYGT	3 cut(s)	641, 1485, 2292
AhlI	ACTAGT	1 cut(s)	1780
AjnI	CCWGG	2 cut(s)	2062, 2371
AjuI	GAANNNNNNNTTGG	2 cut(s)	999, 1031
AloI	GAACNNNNNNTCC	2 cut(s)	115, 147
Alw21I	GWGCWC	3 cut(s)	89, 1507, 1778
Alw26I	GTCTC	2 cut(s)	1045, 2331
AlwI	GGATC	4 cut(s)	515, 864, 877, 960
AoxI	GGCC	5 cut(s)	706, 1146, 2060, 2101, 2308
ApeKI	GCWGC	6 cut(s)	300, 488, 857, 968, 1367, 2189
ApoI	RAATTY	7 cut(s)	58, 100, 623, 1233, 1419, 1753, 2032
AseI	ATTAAT	1 cut(s)	882
AspLEI	GCGC	4 cut(s)	409, 991, 1013, 1907
AspS9I	GGNCC	2 cut(s)	412, 2308
AsuHPI	GGTGA	2 cut(s)	221, 509
AsuII	TTCGAA	1 cut(s)	1190
AsuNHI	GCTAGC	1 cut(s)	2267
AvaII	GGWCC	1 cut(s)	412
BamHI	GGATCC	1 cut(s)	869
BanII	GRGCYC	2 cut(s)	89, 1778
Bbv12I	GWGCWC	3 cut(s)	89, 1507, 1778
BbvI	GCAGC	6 cut(s)	312, 475, 844, 955, 1354, 2176
BccI	CCATC	3 cut(s)	58, 674, 802
BciT130I	CCWGG	2 cut(s)	2064, 2373
BclI	TGATCA	2 cut(s)	1351, 1834
BcoDI	GTCTC	2 cut(s)	1045, 2331
BcuI	ACTAGT	1 cut(s)	1780
BfaI	CTAG	9 cut(s)	201, 468, 768, 1074, 1205, 1508, 1781, 2160, 2268
BfmI	CTRYAG	2 cut(s)	118, 858
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	6 cut(s)	301, 489, 858, 969, 1368, 2190
BlpI	GCTNAGC	1 cut(s)	1890
BlsI	GCNGC	6 cut(s)	302, 490, 859, 970, 1369, 2191
Bme1390I	CCNGG	2 cut(s)	2064, 2373
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	2 cut(s)	412, 2308
BmiI	GGNNCC	3 cut(s)	871, 2256, 2370
BmrFI	CCNGG	2 cut(s)	2064, 2373
BmsI	GCATC	4 cut(s)	114, 301, 1317, 2254
BmtI	GCTAGC	1 cut(s)	2271
BpmI	CTGGAG	1 cut(s)	1464
Bpu1102I	GCTNAGC	1 cut(s)	1890
Bpu14I	TTCGAA	1 cut(s)	1190
BpuEI	CTTGAG	2 cut(s)	695, 1102
BsaAI	YACGTR	1 cut(s)	644
BsaI	GGTCTC	2 cut(s)	1045, 2331
BsaJI	CCNNGG	1 cut(s)	2372
Bsc4I	CCNNNNNNNGG	4 cut(s)	1593, 1680, 1712, 2347
Bse118I	RCCGGY	1 cut(s)	1274
Bse1I	ACTGG	1 cut(s)	1575
Bse3DI	GCAATG	3 cut(s)	237, 978, 1686
BseBI	CCWGG	2 cut(s)	2064, 2373
BseDI	CCNNGG	1 cut(s)	2372
BseGI	GGATG	5 cut(s)	129, 316, 794, 1555, 1670
BseLI	CCNNNNNNNGG	4 cut(s)	1593, 1680, 1712, 2347
BseMI	GCAATG	3 cut(s)	237, 978, 1686
BseMII	CTCAG	3 cut(s)	27, 1904, 2118
BseNI	ACTGG	1 cut(s)	1575
BseXI	GCAGC	6 cut(s)	312, 475, 844, 955, 1354, 2176
BsgI	GTGCAG	3 cut(s)	474, 567, 2319
BshFI	GGCC	5 cut(s)	708, 1148, 2062, 2103, 2310
BsiHKAI	GWGCWC	3 cut(s)	89, 1507, 1778
BsiSI	CCGG	1 cut(s)	1275
BsiWI	CGTACG	1 cut(s)	2357
BslFI	GGGAC	1 cut(s)	580
BslI	CCNNNNNNNGG	4 cut(s)	1593, 1680, 1712, 2347
BsmAI	GTCTC	2 cut(s)	1045, 2331
BsmFI	GGGAC	1 cut(s)	580
BsnI	GGCC	5 cut(s)	708, 1148, 2062, 2103, 2310
Bso31I	GGTCTC	2 cut(s)	1045, 2331
Bsp119I	TTCGAA	1 cut(s)	1190
Bsp1286I	GDGCHC	3 cut(s)	89, 1507, 1778
Bsp143I	GATC	8 cut(s)	48, 507, 869, 952, 1300, 1351, 1834, 2105
Bsp1720I	GCTNAGC	1 cut(s)	1890
BspACI	CCGC	1 cut(s)	873
BspANI	GGCC	5 cut(s)	708, 1148, 2062, 2103, 2310
BspCNI	CTCAG	3 cut(s)	28, 1903, 2119
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	3 cut(s)	871, 2256, 2370
BspMAI	CTGCAG	2 cut(s)	122, 862
BspMI	ACCTGC	1 cut(s)	205
BspOI	GCTAGC	1 cut(s)	2271
BspPI	GGATC	4 cut(s)	515, 864, 877, 960
BspQI	GCTCTTC	2 cut(s)	1440, 1570
BspT104I	TTCGAA	1 cut(s)	1190
BspTNI	GGTCTC	2 cut(s)	1045, 2331
BsrDI	GCAATG	3 cut(s)	237, 978, 1686
BsrFI	RCCGGY	1 cut(s)	1274
BsrI	ACTGG	1 cut(s)	1575
BssAI	RCCGGY	1 cut(s)	1274
BssECI	CCNNGG	1 cut(s)	2372
BssMI	GATC	8 cut(s)	48, 507, 869, 952, 1300, 1351, 1834, 2105
Bst2UI	CCWGG	2 cut(s)	2064, 2373
Bst4CI	ACNGT	1 cut(s)	365
Bst6I	CTCTTC	5 cut(s)	801, 1440, 1447, 1570, 1599
BstAPI	GCANNNNNTGC	2 cut(s)	1388, 1886
BstBAI	YACGTR	1 cut(s)	644
BstBI	TTCGAA	1 cut(s)	1190
BstC8I	GCNNGC	8 cut(s)	181, 195, 228, 1561, 1728, 1882, 2187, 2269
BstDEI	CTNAG	4 cut(s)	36, 1890, 2127, 2383
BstF5I	GGATG	5 cut(s)	129, 316, 794, 1555, 1670
BstHHI	GCGC	4 cut(s)	409, 991, 1013, 1907
BstKTI	GATC	8 cut(s)	51, 510, 872, 955, 1303, 1354, 1837, 2108
BstMAI	GTCTC	2 cut(s)	1045, 2331
BstMBI	GATC	8 cut(s)	48, 507, 869, 952, 1300, 1351, 1834, 2105
BstMWI	GCNNNNNNNGC	9 cut(s)	185, 194, 488, 1154, 1304, 1388, 1439, 1877, 1886
BstNI	CCWGG	2 cut(s)	2064, 2373
BstNSI	RCATGY	6 cut(s)	786, 1386, 1489, 1563, 1730, 2296
BstSCI	CCNGG	2 cut(s)	2062, 2371
BstSFI	CTRYAG	2 cut(s)	118, 858
BstV1I	GCAGC	6 cut(s)	312, 475, 844, 955, 1354, 2176
BstX2I	RGATCY	2 cut(s)	869, 952
BstYI	RGATCY	2 cut(s)	869, 952
BsuRI	GGCC	5 cut(s)	708, 1148, 2062, 2103, 2310
BtsCI	GGATG	5 cut(s)	129, 316, 794, 1555, 1670
BtsI	GCAGTG	4 cut(s)	183, 777, 1507, 2180
BtsIMutI	CAGTG	7 cut(s)	183, 777, 827, 1507, 1568, 1968, 2180
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	8 cut(s)	181, 195, 228, 1561, 1728, 1882, 2187, 2269
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	4 cut(s)	409, 991, 1013, 1907
Cfr10I	RCCGGY	1 cut(s)	1274
Cfr13I	GGNCC	2 cut(s)	412, 2308
CseI	GACGC	1 cut(s)	1163
Csp6I	GTAC	5 cut(s)	773, 960, 1489, 1792, 2358
CviQI	GTAC	5 cut(s)	773, 960, 1489, 1792, 2358
DdeI	CTNAG	4 cut(s)	36, 1890, 2127, 2383
DpnI	GATC	8 cut(s)	50, 509, 871, 954, 1302, 1353, 1836, 2107
DpnII	GATC	8 cut(s)	48, 507, 869, 952, 1300, 1351, 1834, 2105
DraI	TTTAAA	1 cut(s)	948
DraIII	CACNNNGTG	1 cut(s)	497
EaeI	YGGCCR	1 cut(s)	2101
Eam1104I	CTCTTC	5 cut(s)	801, 1440, 1447, 1570, 1599
EarI	CTCTTC	5 cut(s)	801, 1440, 1447, 1570, 1599
Ecl136II	GAGCTC	2 cut(s)	87, 1776
Eco147I	AGGCCT	1 cut(s)	2062
Eco24I	GRGCYC	2 cut(s)	89, 1778
Eco31I	GGTCTC	2 cut(s)	1045, 2331
Eco32I	GATATC	1 cut(s)	978
Eco47I	GGWCC	1 cut(s)	412
Eco53kI	GAGCTC	2 cut(s)	87, 1776
Eco57I	CTGAAG	1 cut(s)	1295
EcoICRI	GAGCTC	2 cut(s)	87, 1776
EcoRI	GAATTC	3 cut(s)	100, 623, 1753
EcoRII	CCWGG	2 cut(s)	2062, 2371
EcoRV	GATATC	1 cut(s)	978
EcoT22I	ATGCAT	2 cut(s)	129, 1728
EcoT38I	GRGCYC	2 cut(s)	89, 1778
FalI	AAGNNNNNCTT	2 cut(s)	1596, 1628
FaqI	GGGAC	1 cut(s)	580
FauNDI	CATATG	1 cut(s)	2275
FbaI	TGATCA	2 cut(s)	1351, 1834
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	6 cut(s)	301, 489, 858, 969, 1368, 2190
FokI	GGATG	5 cut(s)	136, 323, 781, 1562, 1657
FriOI	GRGCYC	2 cut(s)	89, 1778
Fsp4HI	GCNGC	6 cut(s)	301, 489, 858, 969, 1368, 2190
FspBI	CTAG	9 cut(s)	201, 468, 768, 1074, 1205, 1508, 1781, 2160, 2268
FspI	TGCGCA	1 cut(s)	990
GlaI	GCGC	4 cut(s)	408, 990, 1012, 1906
GluI	GCNGC	6 cut(s)	301, 489, 858, 969, 1368, 2190
GsuI	CTGGAG	1 cut(s)	1464
HaeIII	GGCC	5 cut(s)	708, 1148, 2062, 2103, 2310
HapII	CCGG	1 cut(s)	1275
HgaI	GACGC	1 cut(s)	1163
HhaI	GCGC	4 cut(s)	409, 991, 1013, 1907
Hin6I	GCGC	4 cut(s)	407, 989, 1011, 1905
HinP1I	GCGC	4 cut(s)	407, 989, 1011, 1905
HincII	GTYRAC	2 cut(s)	2011, 2229
HindII	GTYRAC	2 cut(s)	2011, 2229
HindIII	AAGCTT	2 cut(s)	195, 2016
HinfI	GANTC	8 cut(s)	695, 846, 994, 1211, 1655, 1947, 1958, 2055
HpaI	GTTAAC	1 cut(s)	2229
HpaII	CCGG	1 cut(s)	1275
HphI	GGTGA	2 cut(s)	221, 509
Hpy166II	GTNNAC	6 cut(s)	156, 580, 759, 1483, 2011, 2229
Hpy188I	TCNGA	4 cut(s)	722, 919, 1356, 1759
Hpy8I	GTNNAC	6 cut(s)	156, 580, 759, 1483, 2011, 2229
HpyAV	CCTTC	7 cut(s)	682, 1319, 1516, 1669, 1930, 1937, 2359
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4IV	ACGT	2 cut(s)	461, 643
HpyF10VI	GCNNNNNNNGC	9 cut(s)	185, 194, 488, 1154, 1304, 1388, 1439, 1877, 1886
HpyF3I	CTNAG	4 cut(s)	36, 1890, 2127, 2383
HpySE526I	ACGT	2 cut(s)	461, 643
HspAI	GCGC	4 cut(s)	407, 989, 1011, 1905
Ksp22I	TGATCA	2 cut(s)	1351, 1834
KspAI	GTTAAC	1 cut(s)	2229
Kzo9I	GATC	8 cut(s)	48, 507, 869, 952, 1300, 1351, 1834, 2105
LguI	GCTCTTC	2 cut(s)	1440, 1570
LmnI	GCTCC	5 cut(s)	84, 902, 1773, 2254, 2379
Lsp1109I	GCAGC	6 cut(s)	312, 475, 844, 955, 1354, 2176
LweI	GCATC	4 cut(s)	114, 301, 1317, 2254
MaeI	CTAG	9 cut(s)	201, 468, 768, 1074, 1205, 1508, 1781, 2160, 2268
MaeII	ACGT	2 cut(s)	461, 643
MaeIII	GTNAC	4 cut(s)	1035, 1238, 1963, 2072
MalI	GATC	8 cut(s)	50, 509, 871, 954, 1302, 1353, 1836, 2107
MboI	GATC	8 cut(s)	48, 507, 869, 952, 1300, 1351, 1834, 2105
MfeI	CAATTG	2 cut(s)	1014, 1476
MflI	RGATCY	2 cut(s)	869, 952
MhlI	GDGCHC	3 cut(s)	89, 1507, 1778
MlyI	GAGTC	1 cut(s)	840
MmeI	TCCRAC	3 cut(s)	323, 847, 1429
Mph1103I	ATGCAT	2 cut(s)	129, 1728
MslI	CAYNNNNRTG	2 cut(s)	1428, 2208
MspA1I	CMGCKG	1 cut(s)	857
MspI	CCGG	1 cut(s)	1275
MspR9I	CCNGG	2 cut(s)	2064, 2373
MunI	CAATTG	2 cut(s)	1014, 1476
MvaI	CCWGG	2 cut(s)	2064, 2373
MwoI	GCNNNNNNNGC	9 cut(s)	185, 194, 488, 1154, 1304, 1388, 1439, 1877, 1886
NdeI	CATATG	1 cut(s)	2275
NdeII	GATC	8 cut(s)	48, 507, 869, 952, 1300, 1351, 1834, 2105
NheI	GCTAGC	1 cut(s)	2267
NlaIV	GGNNCC	3 cut(s)	871, 2256, 2370
NmeAIII	GCCGAG	1 cut(s)	2350
NmuCI	GTSAC	3 cut(s)	1238, 1963, 2072
NsbI	TGCGCA	1 cut(s)	990
NsiI	ATGCAT	2 cut(s)	129, 1728
NspI	RCATGY	6 cut(s)	786, 1386, 1489, 1563, 1730, 2296
NspV	TTCGAA	1 cut(s)	1190
PacI	TTAATTAA	1 cut(s)	882
PaeI	GCATGC	2 cut(s)	1563, 1730
PagI	TCATGA	1 cut(s)	328
PceI	AGGCCT	1 cut(s)	2062
PciI	ACATGT	2 cut(s)	1485, 2292
PciSI	GCTCTTC	2 cut(s)	1440, 1570
PfeI	GAWTC	7 cut(s)	695, 994, 1211, 1655, 1947, 1958, 2055
Pfl23II	CGTACG	1 cut(s)	2357
PflMI	CCANNNNNTGG	1 cut(s)	1712
PkrI	GCNGC	6 cut(s)	302, 490, 859, 970, 1369, 2191
PleI	GAGTC	1 cut(s)	840
PpsI	GAGTC	1 cut(s)	840
Ppu21I	YACGTR	1 cut(s)	644
PscI	ACATGT	2 cut(s)	1485, 2292
PshBI	ATTAAT	1 cut(s)	882
PsiI	TTATAA	1 cut(s)	78
Psp124BI	GAGCTC	2 cut(s)	89, 1778
Psp6I	CCWGG	2 cut(s)	2062, 2371
PspGI	CCWGG	2 cut(s)	2062, 2371
PspLI	CGTACG	1 cut(s)	2357
PspN4I	GGNNCC	3 cut(s)	871, 2256, 2370
PspPI	GGNCC	2 cut(s)	412, 2308
PstI	CTGCAG	2 cut(s)	122, 862
PsuI	RGATCY	2 cut(s)	869, 952
PvuII	CAGCTG	1 cut(s)	857
RsaI	GTAC	5 cut(s)	774, 961, 1490, 1793, 2359
RsaNI	GTAC	5 cut(s)	773, 960, 1489, 1792, 2358
RseI	CAYNNNNRTG	2 cut(s)	1428, 2208
SacI	GAGCTC	2 cut(s)	89, 1778
SapI	GCTCTTC	2 cut(s)	1440, 1570
SatI	GCNGC	6 cut(s)	301, 489, 858, 969, 1368, 2190
Sau3AI	GATC	8 cut(s)	48, 507, 869, 952, 1300, 1351, 1834, 2105
Sau96I	GGNCC	2 cut(s)	412, 2308
SchI	GAGTC	1 cut(s)	840
ScrFI	CCNGG	2 cut(s)	2064, 2373
SduI	GDGCHC	3 cut(s)	89, 1507, 1778
SfaNI	GCATC	4 cut(s)	114, 301, 1317, 2254
SfcI	CTRYAG	2 cut(s)	118, 858
SfuI	TTCGAA	1 cut(s)	1190
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	2 cut(s)	1428, 2208
SmlI	CTYRAG	2 cut(s)	710, 1081
SmoI	CTYRAG	2 cut(s)	710, 1081
SpeI	ACTAGT	1 cut(s)	1780
SphI	GCATGC	2 cut(s)	1563, 1730
SseBI	AGGCCT	1 cut(s)	2062
SsiI	CCGC	1 cut(s)	873
SspMI	CTAG	9 cut(s)	201, 468, 768, 1074, 1205, 1508, 1781, 2160, 2268
SstI	GAGCTC	2 cut(s)	89, 1778
StuI	AGGCCT	1 cut(s)	2062
StyD4I	CCNGG	2 cut(s)	2062, 2371
TaaI	ACNGT	1 cut(s)	365
TaiI	ACGT	2 cut(s)	464, 646
TaqI	TCGA	6 cut(s)	24, 89, 421, 1190, 1321, 1842
TaqII	GACCGA	1 cut(s)	255
TatI	WGTACW	2 cut(s)	1488, 1791
TfiI	GAWTC	7 cut(s)	695, 994, 1211, 1655, 1947, 1958, 2055
TscAI	CASTG	7 cut(s)	190, 784, 834, 1507, 1575, 1968, 2187
TseFI	GTSAC	3 cut(s)	1238, 1963, 2072
TseI	GCWGC	6 cut(s)	300, 488, 857, 968, 1367, 2189
Tsp45I	GTSAC	3 cut(s)	1238, 1963, 2072
TspDTI	ATGAA	9 cut(s)	248, 317, 620, 624, 1245, 1412, 1566, 1659, 2125
TspGWI	ACGGA	3 cut(s)	414, 2016, 2067
TspRI	CASTG	7 cut(s)	190, 784, 834, 1507, 1575, 1968, 2187
Van91I	CCANNNNNTGG	1 cut(s)	1712
VpaK11BI	GGWCC	1 cut(s)	412
VspI	ATTAAT	1 cut(s)	882
XapI	RAATTY	7 cut(s)	58, 100, 623, 1233, 1419, 1753, 2032
XbaI	TCTAGA	2 cut(s)	1204, 1507
XceI	RCATGY	6 cut(s)	786, 1386, 1489, 1563, 1730, 2296
XmiI	GTMKAC	1 cut(s)	579
XspI	CTAG	9 cut(s)	201, 468, 768, 1074, 1205, 1508, 1781, 2160, 2268
Zsp2I	ATGCAT	2 cut(s)	129, 1728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.