MD06G1200200.v1.1

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001872
Physical Location & Seq
Reverse (-)
33366151 .. 33368470
2320 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1200200.v1.1.491

Sequence Viewer

Length: 1395 bp
ATGGCAGTGATTGCCCTGAAGTGCCCTGGCATCGAAGTAGCAGTGGTAGACATCTCCGTGCCCCGAATCGCTGCCTGGAACAGCGACCAGCTCCCCATTTACGAGCCAGGTCTTGACGAGATTGTGAAGCAATGCAGAGGAAAGAACCTCTTCTTCAGCACTGCTGTCGAAAAGCATGTCGCGGAGGCGGACATTATCTTTGTTTCGGTTAACACCCCAACGAAAACCCGGGGACTTGGAGCCGGCAAGGCTGCAGACTTGACATACTGGGAAAGCGCAGCCCGAATGATCGCTGATGTTTCAAAATCCGACAAGATTGTTGTTGAGAAATCAACTGTCCCGGTGAAAACCGCCGAGGCGATTGAAAAGATATTGACGCATAACAGCAAGGGAATCAAGTACCAGATTCTCTCGAACCCGGAGTTTCTTGCCGAGGGGACAGCAATTGAGGATCTTTTCAAGCCCGACCGCGTGTTGATCGGAGGGAGGGAAACCCCGGATGGCCAGAAGGCAGTCCAGGCATTGAAGGCAGTGTATGCCAATTGGGTTCCGGAAGACAAGATCATAACAACCAATCTGTGGTCAGCCGAGCTGTCAAAGCTCGCCGCGAATGCCTTCCTGGCGCAGAGGATCTCGTCTGTGAATGCAATGTCAGCTCTCTGCGAGGCCACCGGAGCGAATATCTCAGAAGTTTCCCATGCTGTTGGCAAGGACACCAGAATTGGATCGAAGTTTCTCAATGCCAGCGTTGGATTCGGGGGGTCTTGTTTTCAGAAGGACATTCTGAACCTGGTCTATATCTGCGAGTGCAATGGCCTCCCTGAAGTTGCAGACTATTGGAAACAAGTGATCAAGGTGAATGACTACCAAAAGAGCCGCTTCGTGAACAGGGTTGTCTCTTCGATGTTCAACACTGTTTCGGGCAAAAAGATTGCGATACTTGGATTCGCGTTCAAGAAAAACACCGGGGACACGAGGGAGACCCCTGCCATTGATGTTTGCAACGGGCTGTTGGGGGACAAGGCGCACTTGAGCATATATGATCTGCAGGTTACTGAGGAGCAGATTCGGAGGGATCTTTCGATGAAAAAGTTTGATTGGGACCATCCGATTCATCTGCAGCCAATGAGCCCTGCCGCGGTCAAGGAAGTGAGTGTAGTGTGGGATGCTTATGAGGCAACAAAGGGTGCTCATGGCATCTGCATTCTGACCGAGTGGGACGAGTTCAAGACGCTCGATTACAAAAAGATTTACGACAACATGCAGAAGCCTGCGTTCTTGTTCGATGGGAGGAACGTCGTCGATGTTGAGAAGCTGAGAGAGATCGGATTCATCGTGTACTCGATCGGGAAGCCGTTGGATTCTTGGCTCAAGGACATGCCTGCTGTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

465

Amino Acids

51.16

Weight (kDa)

6.23

Isoelectric Point (pI)

26.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_N PF03721 4 - 169 3.6e-55 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh PF00984 194 - 288 2.4e-32 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C PF03720 312 - 435 6.2e-29 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1039
AccB7I CCANNNNNTGG 1 cut(s) 579
AccI GTMKAC 1 cut(s) 48
AccII CGCG 5 cut(s) 182, 471, 608, 950, 1139
AccIII TCCGGA 1 cut(s) 550
AciI CCGC 8 cut(s) 182, 188, 351, 469, 606, 877, 1137, 1139
AclWI GGATC 4 cut(s) 459, 638, 733, 1083
AcoI YGGCCR 1 cut(s) 502
AcuI CTGAAG 3 cut(s) 38, 139, 843
AfaI GTAC 2 cut(s) 401, 1340
AfiI CCNNNNNNNGG 2 cut(s) 579, 1138
AgsI TTSAA 7 cut(s) 303, 365, 460, 526, 910, 955, 1228
AjnI CCWGG 6 cut(s) 25, 74, 106, 516, 618, 789
AluBI AGCT 5 cut(s) 91, 592, 601, 656, 1315
AluI AGCT 5 cut(s) 91, 592, 601, 656, 1315
Alw21I GWGCWC 1 cut(s) 1192
Alw26I GTCTC 2 cut(s) 901, 974
AlwI GGATC 4 cut(s) 459, 638, 733, 1083
Ama87I CYCGRG 1 cut(s) 228
Aor13HI TCCGGA 1 cut(s) 550
AoxI GGCC 3 cut(s) 502, 666, 814
ApeKI GCWGC 4 cut(s) 71, 251, 278, 1120
ArsI GACNNNNNNTTYG 4 cut(s) 162, 182, 194, 214
Asp700I GAANNNNTTC 2 cut(s) 149, 614
AspLEI GCGC 3 cut(s) 278, 625, 1027
AspS9I GGNCC 1 cut(s) 1102
AsuC2I CCSGG 6 cut(s) 229, 230, 341, 419, 497, 967
AsuHPI GGTGA 2 cut(s) 355, 868
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 1 cut(s) 1102
BaeGI GKGCMC 2 cut(s) 26, 63
BalI TGGCCA 1 cut(s) 504
BanII GRGCYC 1 cut(s) 1133
BauI CACGAG 1 cut(s) 973
BbsI GAAGAC 1 cut(s) 561
Bbv12I GWGCWC 1 cut(s) 1192
BbvI GCAGC 4 cut(s) 58, 238, 290, 1132
BccI CCATC 3 cut(s) 494, 1113, 1280
BceAI ACGGC 1 cut(s) 1339
BcgI CGANNNNNNTGC 4 cut(s) 148, 182, 1099, 1133
BciT130I CCWGG 6 cut(s) 27, 76, 108, 518, 620, 791
BclI TGATCA 1 cut(s) 849
BcnI CCSGG 6 cut(s) 229, 230, 341, 419, 497, 967
BcoDI GTCTC 2 cut(s) 901, 974
BfmI CTRYAG 3 cut(s) 252, 1046, 1118
BfuAI ACCTGC 1 cut(s) 1039
BglI GCCNNNNNGGC 2 cut(s) 248, 620
BisI GCNGC 7 cut(s) 72, 252, 279, 606, 877, 1121, 1137
BlsI GCNGC 7 cut(s) 73, 253, 280, 607, 878, 1122, 1138
Bme18I GGWCC 1 cut(s) 1102
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 1102
BmiI GGNNCC 3 cut(s) 241, 549, 1103
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 3 cut(s) 39, 1156, 1206
BmuI ACTGGG 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 561
BpuEI CTTGAG 2 cut(s) 1051, 1355
BpuMI CCSGG 6 cut(s) 229, 230, 341, 419, 497, 967
BsaI GGTCTC 1 cut(s) 974
BsaJI CCNNGG 8 cut(s) 25, 228, 229, 354, 432, 495, 966, 1137
BsaWI WCCGGW 2 cut(s) 550, 671
Bsc4I CCNNNNNNNGG 2 cut(s) 579, 1138
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 272
Bse3DI GCAATG 3 cut(s) 137, 654, 817
BseAI TCCGGA 1 cut(s) 550
BseBI CCWGG 6 cut(s) 27, 76, 108, 518, 620, 791
BseDI CCNNGG 8 cut(s) 25, 228, 229, 354, 432, 495, 966, 1137
BseGI GGATG 3 cut(s) 505, 1105, 1171
BseLI CCNNNNNNNGG 2 cut(s) 579, 1138
BseMI GCAATG 3 cut(s) 137, 654, 817
BseMII CTCAG 3 cut(s) 699, 1047, 1307
BseNI ACTGG 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 1073
BseSI GKGCMC 2 cut(s) 26, 63
BseXI GCAGC 4 cut(s) 58, 238, 290, 1132
Bsh1236I CGCG 5 cut(s) 182, 471, 608, 950, 1139
Bsh1285I CGRYCG 2 cut(s) 469, 1347
BshFI GGCC 3 cut(s) 504, 668, 816
BsiEI CGRYCG 2 cut(s) 469, 1347
BsiHKAI GWGCWC 1 cut(s) 1192
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 8 cut(s) 229, 243, 341, 419, 497, 551, 672, 966
BslFI GGGAC 7 cut(s) 246, 323, 451, 983, 1031, 1115, 1232
BslI CCNNNNNNNGG 2 cut(s) 579, 1138
BsmAI GTCTC 2 cut(s) 901, 974
BsmFI GGGAC 7 cut(s) 246, 323, 451, 983, 1031, 1115, 1232
BsmI GAATGC 3 cut(s) 616, 649, 1203
BsnI GGCC 3 cut(s) 504, 668, 816
Bso31I GGTCTC 1 cut(s) 974
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 4 cut(s) 26, 63, 1133, 1192
Bsp13I TCCGGA 1 cut(s) 550
BspACI CCGC 8 cut(s) 182, 188, 351, 469, 606, 877, 1137, 1139
BspANI GGCC 3 cut(s) 504, 668, 816
BspCNI CTCAG 3 cut(s) 698, 1048, 1308
BspEI TCCGGA 1 cut(s) 550
BspFNI CGCG 5 cut(s) 182, 471, 608, 950, 1139
BspLI GGNNCC 3 cut(s) 241, 549, 1103
BspMAI CTGCAG 3 cut(s) 256, 1050, 1122
BspMI ACCTGC 1 cut(s) 1039
BspPI GGATC 4 cut(s) 459, 638, 733, 1083
BspTNI GGTCTC 1 cut(s) 974
BsrDI GCAATG 3 cut(s) 137, 654, 817
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 8 cut(s) 25, 228, 229, 354, 432, 495, 966, 1137
BssSI CACGAG 1 cut(s) 973
Bst2BI CACGAG 1 cut(s) 973
Bst2UI CCWGG 6 cut(s) 27, 76, 108, 518, 620, 791
Bst4CI ACNGT 2 cut(s) 337, 916
Bst6I CTCTTC 2 cut(s) 155, 904
BstAPI GCANNNNNTGC 2 cut(s) 11, 536
BstC8I GCNNGC 5 cut(s) 244, 603, 745, 1272, 1383
BstDEI CTNAG 3 cut(s) 685, 1056, 1316
BstDSI CCRYGG 1 cut(s) 1137
BstF5I GGATG 3 cut(s) 505, 1105, 1171
BstFNI CGCG 5 cut(s) 182, 471, 608, 950, 1139
BstHHI GCGC 3 cut(s) 278, 625, 1027
BstMAI GTCTC 2 cut(s) 901, 974
BstMCI CGRYCG 2 cut(s) 469, 1347
BstNI CCWGG 6 cut(s) 27, 76, 108, 518, 620, 791
BstNSI RCATGY 3 cut(s) 179, 1264, 1381
BstSFI CTRYAG 3 cut(s) 252, 1046, 1118
BstSLI GKGCMC 2 cut(s) 26, 63
BstUI CGCG 5 cut(s) 182, 471, 608, 950, 1139
BstV1I GCAGC 4 cut(s) 58, 238, 290, 1132
BstV2I GAAGAC 1 cut(s) 561
BstX2I RGATCY 3 cut(s) 451, 630, 1075
BstXI CCANNNNNNTGG 1 cut(s) 704
BstYI RGATCY 3 cut(s) 451, 630, 1075
BsuRI GGCC 3 cut(s) 504, 668, 816
BtgI CCRYGG 1 cut(s) 1137
BtsCI GGATG 3 cut(s) 505, 1105, 1171
BtsI GCAGTG 4 cut(s) 12, 48, 159, 537
BtsIMutI CAGTG 5 cut(s) 12, 48, 159, 537, 912
BveI ACCTGC 1 cut(s) 1039
Cac8I GCNNGC 5 cut(s) 244, 603, 745, 1272, 1383
CfoI GCGC 3 cut(s) 278, 625, 1027
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 1102
Cfr42I CCGCGG 1 cut(s) 1140
Cfr9I CCCGGG 1 cut(s) 228
CseI GACGC 2 cut(s) 385, 1240
CsiI ACCWGGT 1 cut(s) 789
Csp6I GTAC 2 cut(s) 400, 1339
CviAII CATG 5 cut(s) 176, 698, 1193, 1261, 1378
CviQI GTAC 2 cut(s) 400, 1339
DdeI CTNAG 3 cut(s) 685, 1056, 1316
EaeI YGGCCR 1 cut(s) 502
Eam1104I CTCTTC 2 cut(s) 155, 904
EarI CTCTTC 2 cut(s) 155, 904
EciI GGCGGA 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 1133
Eco31I GGTCTC 1 cut(s) 974
Eco47I GGWCC 1 cut(s) 1102
Eco57I CTGAAG 3 cut(s) 38, 139, 843
Eco88I CYCGRG 1 cut(s) 228
EcoRII CCWGG 6 cut(s) 25, 74, 106, 516, 618, 789
EcoT38I GRGCYC 1 cut(s) 1133
FaeI CATG 5 cut(s) 179, 701, 1196, 1264, 1381
FalI AAGNNNNNCTT 6 cut(s) 134, 166, 863, 895, 1013, 1045
FaqI GGGAC 7 cut(s) 246, 323, 451, 983, 1031, 1115, 1232
FatI CATG 5 cut(s) 175, 697, 1192, 1260, 1377
FbaI TGATCA 1 cut(s) 849
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 7 cut(s) 72, 252, 279, 606, 877, 1121, 1137
FokI GGATG 3 cut(s) 512, 1092, 1178
FriOI GRGCYC 1 cut(s) 1133
Fsp4HI GCNGC 7 cut(s) 72, 252, 279, 606, 877, 1121, 1137
GlaI GCGC 3 cut(s) 277, 624, 1026
GluI GCNGC 7 cut(s) 72, 252, 279, 606, 877, 1121, 1137
HaeIII GGCC 3 cut(s) 504, 668, 816
HapII CCGG 8 cut(s) 229, 243, 341, 419, 497, 551, 672, 966
HgaI GACGC 2 cut(s) 385, 1240
HhaI GCGC 3 cut(s) 278, 625, 1027
Hin1II CATG 5 cut(s) 179, 701, 1196, 1264, 1381
Hin6I GCGC 3 cut(s) 276, 623, 1025
HinP1I GCGC 3 cut(s) 276, 623, 1025
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 9 cut(s) 66, 393, 406, 753, 945, 1066, 1111, 1329, 1361
HpaI GTTAAC 1 cut(s) 211
HpaII CCGG 8 cut(s) 229, 243, 341, 419, 497, 551, 672, 966
HphI GGTGA 2 cut(s) 355, 868
Hpy166II GTNNAC 4 cut(s) 49, 211, 886, 1339
Hpy188I TCNGA 9 cut(s) 310, 482, 688, 774, 786, 1071, 1110, 1209, 1328
Hpy188III TCNNGA 7 cut(s) 113, 412, 551, 883, 955, 1228, 1348
Hpy8I GTNNAC 4 cut(s) 49, 211, 886, 1339
Hpy99I CGWCG 2 cut(s) 1301, 1304
HpyAV CCTTC 4 cut(s) 502, 520, 625, 769
HpyCH4III ACNGT 2 cut(s) 337, 916
HpyCH4IV ACGT 1 cut(s) 1296
HpyF3I CTNAG 3 cut(s) 685, 1056, 1316
HpySE526I ACGT 1 cut(s) 1296
Hsp92II CATG 5 cut(s) 179, 701, 1196, 1264, 1381
HspAI GCGC 3 cut(s) 276, 623, 1025
Kpn2I TCCGGA 1 cut(s) 550
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 849
KspAI GTTAAC 1 cut(s) 211
KspI CCGCGG 1 cut(s) 1140
LmnI GCTCC 4 cut(s) 96, 239, 674, 1060
Lsp1109I GCAGC 4 cut(s) 58, 238, 290, 1132
LweI GCATC 3 cut(s) 39, 1156, 1206
MabI ACCWGGT 1 cut(s) 789
MaeII ACGT 1 cut(s) 1296
MaeIII GTNAC 1 cut(s) 1051
MboII GAAGA 4 cut(s) 142, 145, 566, 891
MfeI CAATTG 2 cut(s) 444, 541
MflI RGATCY 3 cut(s) 451, 630, 1075
MhlI GDGCHC 4 cut(s) 26, 63, 1133, 1192
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 3 cut(s) 444, 541, 720
MluNI TGGCCA 1 cut(s) 504
MmeI TCCRAC 3 cut(s) 333, 730, 1338
Mox20I TGGCCA 1 cut(s) 504
MroI TCCGGA 1 cut(s) 550
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 2 cut(s) 149, 614
MscI TGGCCA 1 cut(s) 504
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 1139
MspI CCGG 8 cut(s) 229, 243, 341, 419, 497, 551, 672, 966
MunI CAATTG 2 cut(s) 444, 541
Mva1269I GAATGC 3 cut(s) 616, 649, 1203
MvaI CCWGG 6 cut(s) 27, 76, 108, 518, 620, 791
MvnI CGCG 5 cut(s) 182, 471, 608, 950, 1139
NaeI GCCGGC 1 cut(s) 244
NciI CCSGG 6 cut(s) 229, 230, 341, 419, 497, 967
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 5 cut(s) 179, 701, 1196, 1264, 1381
NlaIV GGNNCC 3 cut(s) 241, 549, 1103
NmeAIII GCCGAG 3 cut(s) 379, 457, 613
NspI RCATGY 3 cut(s) 179, 1264, 1381
PcsI WCGNNNNNNNCGW 1 cut(s) 1332
PctI GAATGC 3 cut(s) 616, 649, 1203
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 2 cut(s) 149, 614
PfeI GAWTC 9 cut(s) 66, 393, 406, 753, 945, 1066, 1111, 1329, 1361
PflMI CCANNNNNTGG 1 cut(s) 579
PkrI GCNGC 7 cut(s) 73, 253, 280, 607, 878, 1122, 1138
Ple19I CGATCG 1 cut(s) 1347
Psp6I CCWGG 6 cut(s) 25, 74, 106, 516, 618, 789
PspGI CCWGG 6 cut(s) 25, 74, 106, 516, 618, 789
PspN4I GGNNCC 3 cut(s) 241, 549, 1103
PspPI GGNCC 1 cut(s) 1102
PstI CTGCAG 3 cut(s) 256, 1050, 1122
PsuI RGATCY 3 cut(s) 451, 630, 1075
PvuI CGATCG 1 cut(s) 1347
RsaI GTAC 2 cut(s) 401, 1340
RsaNI GTAC 2 cut(s) 400, 1339
RseI CAYNNNNRTG 1 cut(s) 56
SacII CCGCGG 1 cut(s) 1140
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 7 cut(s) 72, 252, 279, 606, 877, 1121, 1137
Sau96I GGNCC 1 cut(s) 1102
SduI GDGCHC 4 cut(s) 26, 63, 1133, 1192
SexAI ACCWGGT 1 cut(s) 789
SfaNI GCATC 3 cut(s) 39, 1156, 1206
SfcI CTRYAG 3 cut(s) 252, 1046, 1118
Sfr303I CCGCGG 1 cut(s) 1140
SgrBI CCGCGG 1 cut(s) 1140
SinI GGWCC 1 cut(s) 1102
SmaI CCCGGG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 1030, 1370
SmoI CTYRAG 2 cut(s) 1030, 1370
Sse9I AATT 3 cut(s) 444, 541, 720
SsiI CCGC 8 cut(s) 182, 188, 351, 469, 606, 877, 1137, 1139
TaaI ACNGT 2 cut(s) 337, 916
TaiI ACGT 1 cut(s) 1299
TaqII GACCGA 1 cut(s) 1226
TasI AATT 3 cut(s) 444, 541, 720
TatI WGTACW 1 cut(s) 1338
TauI GCSGC 3 cut(s) 608, 879, 1139
TfiI GAWTC 9 cut(s) 66, 393, 406, 753, 945, 1066, 1111, 1329, 1361
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 5 cut(s) 12, 48, 166, 537, 919
TseI GCWGC 4 cut(s) 71, 251, 278, 1120
TspDTI ATGAA 3 cut(s) 1100, 1103, 1321
TspGWI ACGGA 1 cut(s) 46
TspMI CCCGGG 1 cut(s) 228
TspRI CASTG 5 cut(s) 12, 48, 166, 537, 919
Van91I CCANNNNNTGG 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 1102
XceI RCATGY 3 cut(s) 179, 1264, 1381
XmaI CCCGGG 1 cut(s) 228
XmiI GTMKAC 1 cut(s) 48
XmnI GAANNNNTTC 2 cut(s) 149, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.