MD14G1209700.v1.1

UDP-glucose 6-dehydrogenase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
29565178 .. 29567000
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1209700.v1.1.491

Sequence Viewer

Length: 1500 bp
ATGTGTCCCGTCCAATCGAACCCAAGTTTGAATCGCCTCACCCGTAGAAGAAAAAAAATGGTGAAGATCTGCTGCATTGGAGCTGGCTATGTTGGGGGTCCAACAATGGCAGTGATTGCCCTGAAGTGCCCTGCCATCGAAGTGGCGGTGGTGGACATCTCCGTGCCCAGAATCGCGGCCTGGAACAGCGACCAGCTCCCCATTTATGAGCCAGGTCTTGATGAGATTGTGAAGCAATGCAGAGGAAAGAACCTCTTCTTCAGCACTGCTGTCGAAAAACATGTCGCTGAGGCGGACATTATCTTCGTTTCAGTTAACACCCCAACGAAAACCAGGGGTCTTGGAGCCGGCAAGGCTGCTGACTTGACATACTGGGAAAGCGCAGCCCGAATGATCGCTGATGTTTCAAAATCCGACAAGATTGTTGTCGAGAAATCAACTGTCCCGGTGAAAACCGCCGAGGCGATTGAAAAGATTTTGGCACATAATAGCAAGGGAATCAAGTACCAGATTCTCTCCAACCCGGAGTTTCTTGCCGAGGGGACAGCAATTGAGGATCTTTTCAAGCCCGACCGCGTGTTGATTGGAGGGAGGGAAACCCCGGATGGCCAGAAGGCAATCCAGGCATTGAAGGCAGTGTACGCGAATTGGGTTCCGGAAGACAGAATCATAACAACCAATCTGTGGTCAGCTGAGCTATCAAAGCTCGCCGCGAACGCCTTCCTGGCGCAGAGGATCTCGTCTGTGAATGCAATGTCAGCTCTCTGTGAGGCCACCGGAGCGAATATCTCTGAAGTTTCCCATGCTGTTGGCAAGGACACCAGAATTGGACCGAAATTTCTCAATGCCAGCGTTGGATTTGGCGGGTCTTGCTTTCAGAAGGACATTCTCAACTTGGTCTACATCTGTGAATGCAATGGCCTCCCTGAAGTTGCAGACTATTGGAAACAAGTGATCAAGGTGAACGACTACCAAAAGAGCCGCTTCGTGAACAGGGTTGTCTCTTCGATGTTCAACACTGTTTCGGGTAAAAAGATTGCGATTCTTGGATTCGCATTCAAGAAAGACACCGGGGACACAAGGGAGACCGCTGCCATTGATGTTTGCAACGGGCTGTTGGGGGACAAGGCGCACTTGAGCATATATGATCTGCAGGTTACTGAGGAACAGATTCGGAGGGATCTTTCGATGAAGAAGTTTGATTGGGACCATCCACTTCATCTGCAGCCAATGAGCCCTGCCGCGGCCAAGGAAGTGAGGGTCGCTTGGGACGCTTACGAGGCAGCAAAGGGCGCTCATGGGATCTGCATTCTCACCGAGTGGGACGAGTTCAAGACACTCGATTACAAGAAGATTTACGACAGCATGCAGAAGCCTGCATTTTTGTTCGATGGGAGGAATGTGGTTGATGCTGGGAAGCTGAGAGAGATCGGATTCATCGTGTATTCGATCGGAAAGCCGTTGGATTCTTGGCTCAAGGACATGCCTGCTGTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

500

Amino Acids

54.84

Weight (kDa)

8.47

Isoelectric Point (pI)

29.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_N PF03721 22 - 204 5.5e-65 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh PF00984 229 - 323 2.2e-32 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C PF03720 347 - 470 6.2e-28 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1144
AccB7I CCANNNNNTGG 1 cut(s) 684
AccI GTMKAC 1 cut(s) 900
AccII CGCG 5 cut(s) 176, 576, 644, 713, 1244
AccIII TCCGGA 1 cut(s) 655
AclWI GGATC 4 cut(s) 564, 743, 1188, 1310
AcoI YGGCCR 2 cut(s) 607, 1245
AcsI RAATTY 1 cut(s) 836
AcuI CTGAAG 4 cut(s) 143, 244, 813, 948
AdeI CACNNNGTG 1 cut(s) 1320
AfaI GTAC 2 cut(s) 506, 641
AfiI CCNNNNNNNGG 2 cut(s) 684, 1243
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 8 cut(s) 31, 408, 470, 565, 631, 1015, 1060, 1333
AjnI CCWGG 5 cut(s) 179, 211, 332, 621, 723
AluBI AGCT 7 cut(s) 83, 196, 692, 697, 706, 761, 1420
AluI AGCT 7 cut(s) 83, 196, 692, 697, 706, 761, 1420
Alw26I GTCTC 2 cut(s) 1006, 1079
AlwI GGATC 4 cut(s) 564, 743, 1188, 1310
Aor13HI TCCGGA 1 cut(s) 655
AoxI GGCC 5 cut(s) 177, 607, 771, 919, 1245
ApeKI GCWGC 6 cut(s) 72, 356, 383, 1091, 1225, 1283
ApoI RAATTY 1 cut(s) 836
ArsI GACNNNNNNTTYG 4 cut(s) 267, 287, 299, 319
Asp700I GAANNNNTTC 3 cut(s) 254, 719, 1170
AspLEI GCGC 4 cut(s) 383, 730, 1132, 1295
AspS9I GGNCC 3 cut(s) 98, 830, 1207
AsuC2I CCSGG 4 cut(s) 446, 524, 602, 1072
AsuHPI GGTGA 5 cut(s) 31, 73, 460, 973, 1306
AvaII GGWCC 3 cut(s) 98, 830, 1207
BaeGI GKGCMC 2 cut(s) 131, 168
BalI TGGCCA 1 cut(s) 609
BanII GRGCYC 1 cut(s) 1238
BarI GAAGNNNNNNTAC 2 cut(s) 623, 655
BbsI GAAGAC 1 cut(s) 666
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 6 cut(s) 59, 343, 395, 1078, 1237, 1295
BccI CCATC 4 cut(s) 143, 599, 1218, 1385
BceAI ACGGC 1 cut(s) 1444
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BciT130I CCWGG 5 cut(s) 181, 213, 334, 623, 725
BclI TGATCA 1 cut(s) 954
BcnI CCSGG 4 cut(s) 446, 524, 602, 1072
BcoDI GTCTC 2 cut(s) 1006, 1079
BfmI CTRYAG 2 cut(s) 1151, 1223
BfoI RGCGCY 1 cut(s) 1296
BfuAI ACCTGC 1 cut(s) 1144
BglI GCCNNNNNGGC 2 cut(s) 353, 725
BglII AGATCT 1 cut(s) 66
BlpI GCTNAGC 1 cut(s) 693
Bme1390I CCNGG 9 cut(s) 181, 213, 334, 446, 524, 602, 623, 725, 1072
Bme18I GGWCC 3 cut(s) 98, 830, 1207
BmgT120I GGNCC 3 cut(s) 98, 830, 1207
BmiI GGNNCC 4 cut(s) 99, 346, 654, 1208
BmrFI CCNGG 9 cut(s) 181, 213, 334, 446, 524, 602, 623, 725, 1072
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 1399
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 666
Bpu10I CCTNAGC 1 cut(s) 288
Bpu1102I GCTNAGC 1 cut(s) 693
BpuEI CTTGAG 2 cut(s) 1156, 1460
BpuMI CCSGG 4 cut(s) 446, 524, 602, 1072
BsaI GGTCTC 1 cut(s) 1079
BsaJI CCNNGG 7 cut(s) 333, 459, 537, 600, 1071, 1242, 1248
BsaWI WCCGGW 2 cut(s) 655, 776
Bsc4I CCNNNNNNNGG 2 cut(s) 684, 1243
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 3 cut(s) 242, 759, 922
BseAI TCCGGA 1 cut(s) 655
BseBI CCWGG 5 cut(s) 181, 213, 334, 623, 725
BseDI CCNNGG 7 cut(s) 333, 459, 537, 600, 1071, 1242, 1248
BseGI GGATG 2 cut(s) 610, 1210
BseLI CCNNNNNNNGG 2 cut(s) 684, 1243
BseMI GCAATG 3 cut(s) 242, 759, 922
BseMII CTCAG 4 cut(s) 279, 684, 1152, 1412
BseNI ACTGG 1 cut(s) 377
BseSI GKGCMC 2 cut(s) 131, 168
BseXI GCAGC 6 cut(s) 59, 343, 395, 1078, 1237, 1295
BseYI CCCAGC 1 cut(s) 1412
Bsh1236I CGCG 5 cut(s) 176, 576, 644, 713, 1244
Bsh1285I CGRYCG 2 cut(s) 574, 1452
BshFI GGCC 5 cut(s) 179, 609, 773, 921, 1247
BsiEI CGRYCG 2 cut(s) 574, 1452
BsiSI CCGG 7 cut(s) 348, 446, 524, 602, 656, 777, 1071
BslFI GGGAC 7 cut(s) 428, 556, 1088, 1136, 1220, 1283, 1337
BslI CCNNNNNNNGG 2 cut(s) 684, 1243
BsmAI GTCTC 2 cut(s) 1006, 1079
BsmFI GGGAC 7 cut(s) 428, 556, 1088, 1136, 1220, 1283, 1337
BsmI GAATGC 4 cut(s) 754, 917, 1055, 1308
BsnI GGCC 5 cut(s) 179, 609, 773, 921, 1247
Bso31I GGTCTC 1 cut(s) 1079
Bsp1286I GDGCHC 3 cut(s) 131, 168, 1238
Bsp13I TCCGGA 1 cut(s) 655
Bsp1720I GCTNAGC 1 cut(s) 693
BspANI GGCC 5 cut(s) 179, 609, 773, 921, 1247
BspCNI CTCAG 4 cut(s) 280, 685, 1153, 1413
BspEI TCCGGA 1 cut(s) 655
BspFNI CGCG 5 cut(s) 176, 576, 644, 713, 1244
BspLI GGNNCC 4 cut(s) 99, 346, 654, 1208
BspMAI CTGCAG 2 cut(s) 1155, 1227
BspMI ACCTGC 1 cut(s) 1144
BspPI GGATC 4 cut(s) 564, 743, 1188, 1310
BspTNI GGTCTC 1 cut(s) 1079
BsrDI GCAATG 3 cut(s) 242, 759, 922
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 1 cut(s) 377
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 7 cut(s) 333, 459, 537, 600, 1071, 1242, 1248
BssT1I CCWWGG 1 cut(s) 1248
Bst2UI CCWGG 5 cut(s) 181, 213, 334, 623, 725
Bst4CI ACNGT 2 cut(s) 442, 1021
Bst6I CTCTTC 2 cut(s) 260, 1009
BstAPI GCANNNNNTGC 1 cut(s) 116
BstC8I GCNNGC 7 cut(s) 85, 349, 708, 850, 1367, 1377, 1488
BstDEI CTNAG 4 cut(s) 288, 693, 1161, 1421
BstDSI CCRYGG 1 cut(s) 1242
BstF5I GGATG 2 cut(s) 610, 1210
BstFNI CGCG 5 cut(s) 176, 576, 644, 713, 1244
BstH2I RGCGCY 1 cut(s) 1296
BstHHI GCGC 4 cut(s) 383, 730, 1132, 1295
BstMAI GTCTC 2 cut(s) 1006, 1079
BstMCI CGRYCG 2 cut(s) 574, 1452
BstNI CCWGG 5 cut(s) 181, 213, 334, 623, 725
BstNSI RCATGY 3 cut(s) 284, 1369, 1486
BstSCI CCNGG 9 cut(s) 179, 211, 332, 444, 522, 600, 621, 723, 1070
BstSFI CTRYAG 2 cut(s) 1151, 1223
BstSLI GKGCMC 2 cut(s) 131, 168
BstUI CGCG 5 cut(s) 176, 576, 644, 713, 1244
BstV1I GCAGC 6 cut(s) 59, 343, 395, 1078, 1237, 1295
BstV2I GAAGAC 1 cut(s) 666
BstX2I RGATCY 5 cut(s) 66, 556, 735, 1180, 1302
BstXI CCANNNNNNTGG 2 cut(s) 142, 809
BstYI RGATCY 5 cut(s) 66, 556, 735, 1180, 1302
BsuRI GGCC 5 cut(s) 179, 609, 773, 921, 1247
BtgI CCRYGG 1 cut(s) 1242
BtsCI GGATG 2 cut(s) 610, 1210
BtsI GCAGTG 3 cut(s) 117, 264, 642
BtsIMutI CAGTG 4 cut(s) 117, 264, 642, 1017
BveI ACCTGC 1 cut(s) 1144
Cac8I GCNNGC 7 cut(s) 85, 349, 708, 850, 1367, 1377, 1488
CfoI GCGC 4 cut(s) 383, 730, 1132, 1295
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 3 cut(s) 98, 830, 1207
Cfr42I CCGCGG 1 cut(s) 1245
CseI GACGC 1 cut(s) 1280
Csp6I GTAC 2 cut(s) 505, 640
CviAII CATG 5 cut(s) 281, 803, 1298, 1366, 1483
CviQI GTAC 2 cut(s) 505, 640
DdeI CTNAG 4 cut(s) 288, 693, 1161, 1421
DraIII CACNNNGTG 1 cut(s) 1320
EaeI YGGCCR 2 cut(s) 607, 1245
Eam1104I CTCTTC 2 cut(s) 260, 1009
EarI CTCTTC 2 cut(s) 260, 1009
EciI GGCGGA 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 1248
Eco24I GRGCYC 1 cut(s) 1238
Eco31I GGTCTC 1 cut(s) 1079
Eco47I GGWCC 3 cut(s) 98, 830, 1207
Eco57I CTGAAG 4 cut(s) 143, 244, 813, 948
EcoRII CCWGG 5 cut(s) 179, 211, 332, 621, 723
EcoT14I CCWWGG 1 cut(s) 1248
EcoT38I GRGCYC 1 cut(s) 1238
ErhI CCWWGG 1 cut(s) 1248
FaeI CATG 5 cut(s) 284, 806, 1301, 1369, 1486
FalI AAGNNNNNCTT 6 cut(s) 239, 271, 968, 1000, 1118, 1150
FaqI GGGAC 7 cut(s) 428, 556, 1088, 1136, 1220, 1283, 1337
FatI CATG 5 cut(s) 280, 802, 1297, 1365, 1482
FauI CCCGC 1 cut(s) 857
FbaI TGATCA 1 cut(s) 954
FblI GTMKAC 1 cut(s) 900
FokI GGATG 2 cut(s) 617, 1197
FriOI GRGCYC 1 cut(s) 1238
GlaI GCGC 4 cut(s) 382, 729, 1131, 1294
GsaI CCCAGC 1 cut(s) 1416
HaeII RGCGCY 1 cut(s) 1296
HaeIII GGCC 5 cut(s) 179, 609, 773, 921, 1247
HapII CCGG 7 cut(s) 348, 446, 524, 602, 656, 777, 1071
HgaI GACGC 1 cut(s) 1280
HhaI GCGC 4 cut(s) 383, 730, 1132, 1295
Hin1II CATG 5 cut(s) 284, 806, 1301, 1369, 1486
Hin6I GCGC 4 cut(s) 381, 728, 1130, 1293
HinP1I GCGC 4 cut(s) 381, 728, 1130, 1293
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HpaI GTTAAC 1 cut(s) 316
HpaII CCGG 7 cut(s) 348, 446, 524, 602, 656, 777, 1071
HphI GGTGA 5 cut(s) 31, 73, 460, 973, 1306
Hpy166II GTNNAC 6 cut(s) 154, 316, 640, 901, 964, 991
Hpy188I TCNGA 6 cut(s) 415, 793, 879, 1176, 1433, 1454
Hpy188III TCNNGA 6 cut(s) 218, 430, 656, 988, 1060, 1333
Hpy8I GTNNAC 6 cut(s) 154, 316, 640, 901, 964, 991
HpyAV CCTTC 4 cut(s) 607, 625, 730, 874
HpyCH4III ACNGT 2 cut(s) 442, 1021
HpyF3I CTNAG 4 cut(s) 288, 693, 1161, 1421
Hsp92II CATG 5 cut(s) 284, 806, 1301, 1369, 1486
HspAI GCGC 4 cut(s) 381, 728, 1130, 1293
Kpn2I TCCGGA 1 cut(s) 655
KroI GCCGGC 1 cut(s) 347
KroNI GCCGGC 1 cut(s) 349
Ksp22I TGATCA 1 cut(s) 954
KspAI GTTAAC 1 cut(s) 316
KspI CCGCGG 1 cut(s) 1245
LmnI GCTCC 4 cut(s) 80, 201, 344, 779
Lsp1109I GCAGC 6 cut(s) 59, 343, 395, 1078, 1237, 1295
LweI GCATC 1 cut(s) 1399
MaeIII GTNAC 1 cut(s) 1156
MboII GAAGA 9 cut(s) 60, 76, 247, 250, 295, 671, 996, 1204, 1363
MfeI CAATTG 1 cut(s) 549
MflI RGATCY 5 cut(s) 66, 556, 735, 1180, 1302
MhlI GDGCHC 3 cut(s) 131, 168, 1238
MlsI TGGCCA 1 cut(s) 609
MluCI AATT 4 cut(s) 549, 646, 825, 836
MluNI TGGCCA 1 cut(s) 609
MmeI TCCRAC 5 cut(s) 125, 438, 543, 835, 1443
Mox20I TGGCCA 1 cut(s) 609
MroI TCCGGA 1 cut(s) 655
MroNI GCCGGC 1 cut(s) 347
MroXI GAANNNNTTC 3 cut(s) 254, 719, 1170
MscI TGGCCA 1 cut(s) 609
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 2 cut(s) 140, 161
Msp20I TGGCCA 1 cut(s) 609
MspA1I CMGCKG 3 cut(s) 692, 1091, 1244
MspI CCGG 7 cut(s) 348, 446, 524, 602, 656, 777, 1071
MspR9I CCNGG 9 cut(s) 181, 213, 334, 446, 524, 602, 623, 725, 1072
MunI CAATTG 1 cut(s) 549
Mva1269I GAATGC 4 cut(s) 754, 917, 1055, 1308
MvaI CCWGG 5 cut(s) 181, 213, 334, 623, 725
MvnI CGCG 5 cut(s) 176, 576, 644, 713, 1244
NaeI GCCGGC 1 cut(s) 349
NciI CCSGG 4 cut(s) 446, 524, 602, 1072
NgoMIV GCCGGC 1 cut(s) 347
NlaIII CATG 5 cut(s) 284, 806, 1301, 1369, 1486
NlaIV GGNNCC 4 cut(s) 99, 346, 654, 1208
NmeAIII GCCGAG 2 cut(s) 484, 562
NspI RCATGY 3 cut(s) 284, 1369, 1486
PaeI GCATGC 1 cut(s) 1369
PciI ACATGT 1 cut(s) 280
PcsI WCGNNNNNNNCGW 2 cut(s) 40, 1437
PctI GAATGC 4 cut(s) 754, 917, 1055, 1308
PdiI GCCGGC 1 cut(s) 349
PdmI GAANNNNTTC 3 cut(s) 254, 719, 1170
PflMI CCANNNNNTGG 1 cut(s) 684
Ple19I CGATCG 1 cut(s) 1452
PscI ACATGT 1 cut(s) 280
Psp6I CCWGG 5 cut(s) 179, 211, 332, 621, 723
PspFI CCCAGC 1 cut(s) 1412
PspGI CCWGG 5 cut(s) 179, 211, 332, 621, 723
PspN4I GGNNCC 4 cut(s) 99, 346, 654, 1208
PspPI GGNCC 3 cut(s) 98, 830, 1207
PstI CTGCAG 2 cut(s) 1155, 1227
PsuI RGATCY 5 cut(s) 66, 556, 735, 1180, 1302
PvuI CGATCG 1 cut(s) 1452
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 2 cut(s) 506, 641
RsaNI GTAC 2 cut(s) 505, 640
RseI CAYNNNNRTG 2 cut(s) 140, 161
SacII CCGCGG 1 cut(s) 1245
SaqAI TTAA 1 cut(s) 315
Sau96I GGNCC 3 cut(s) 98, 830, 1207
ScrFI CCNGG 9 cut(s) 181, 213, 334, 446, 524, 602, 623, 725, 1072
SduI GDGCHC 3 cut(s) 131, 168, 1238
SfaNI GCATC 1 cut(s) 1399
SfcI CTRYAG 2 cut(s) 1151, 1223
Sfr303I CCGCGG 1 cut(s) 1245
SgrBI CCGCGG 1 cut(s) 1245
SinI GGWCC 3 cut(s) 98, 830, 1207
SmiMI CAYNNNNRTG 2 cut(s) 140, 161
SmlI CTYRAG 2 cut(s) 1135, 1475
SmoI CTYRAG 2 cut(s) 1135, 1475
SphI GCATGC 1 cut(s) 1369
Sse9I AATT 4 cut(s) 549, 646, 825, 836
StyD4I CCNGG 9 cut(s) 179, 211, 332, 444, 522, 600, 621, 723, 1070
StyI CCWWGG 1 cut(s) 1248
TaaI ACNGT 2 cut(s) 442, 1021
TaqI TCGA 9 cut(s) 17, 138, 273, 429, 1007, 1187, 1341, 1389, 1448
TaqII GACCGA 1 cut(s) 847
TasI AATT 4 cut(s) 549, 646, 825, 836
TauI GCSGC 5 cut(s) 179, 713, 984, 1244, 1247
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 4 cut(s) 117, 271, 642, 1024
TseI GCWGC 6 cut(s) 72, 356, 383, 1091, 1225, 1283
TspDTI ATGAA 3 cut(s) 1205, 1208, 1426
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 4 cut(s) 117, 271, 642, 1024
Van91I CCANNNNNTGG 1 cut(s) 684
VpaK11BI GGWCC 3 cut(s) 98, 830, 1207
XapI RAATTY 1 cut(s) 836
XceI RCATGY 3 cut(s) 284, 1369, 1486
XmiI GTMKAC 1 cut(s) 900
XmnI GAANNNNTTC 3 cut(s) 254, 719, 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.