pycom06g17680

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0001872
Physical Location & Seq
Reverse (-)
21596793 .. 21597902
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g17680.1

Sequence Viewer

Length: 1110 bp
ATGATCGATGATGTTTCAAAATCCGACAAGATTGTTGTTGAGAAATCAACTGTCCCAGTGAAAACCGCCGAGGCGATTGAAAAGATTTTGACACACAACAGCAAGGGAATCAAGTACCAGATTCTCTCGAACCCGGAGTTTCTTGCCGAGGGGACAGCAATTGAGGATCTTTTCAAGCCCGACCGCGTGTTGATCGGAGGGAGGGAAACACCGGATGGCCAGAAGGCAATCCAGGCATTGAAGGCAGTGTATGCAAATTGGGTTCCGGAAGACAGGATCATAACAACCAATCTGTGGTCAGCCGAGCTGTCAAAGCTCGCAGCGAATGCCTTCCTGGCGCAGAGGATCTCGTCAGTGAATGCAATGTCAGCTCTCTGCGAGGCCACCGGAGCGAATATCTCAGAAGTTTCCCATGCTGTTGGCAAGGACACCAGAATTGGATCGAAGTTTCTCAATGCCAGCGTTGGATTCGGGGGGTCTTGTTTTCAGAAGGACATTCTGAACCTGGTCTATATCTGCGAGTGCAATGGCCTCCCTGAAGTTGCAGACTATTGGAAACAAGTGATCAAGGTGAATGACTACCAAAAGAGCCGCTTCGTGAACAGGGTTGTCTCTTCGATGTTCAACACTGTTTCGGGCAAAAAGATTGCGATACTTGGATTCGCATTCAAGAAAGACACCGGGGACACGAGGGAGACCCCTGCCATTGATGTTTGCAACGGGCTGTTGGGGGACAAGGCGCACTTGAGCATATATGATCTGCAGGTTACTGAGGAGCAGATTCGGAGGGATCTTTCGATGAAAAAGTTTGATTGGGACCATCCGATTCATCTGCAGCCAATGAGCCCTGCCACGGTCAAGGAAGTGAGTGTAGTGTGGGATGCTTATGAGGCAACAAAGGGTGCTCATGGCATCTGCATTCTGACCGAGTGGGACGAGTTCAAGACGCTCGATTACAAGAAGATTTACGACAACATGCAGAAGCCTGCGTTCTTGTTCGATGGGAGGAACGTCGTCGATGTTGAGAAGTTGAGAGAGATCGGATTCATCGTGTACTCGATCGGGAAGCCGTTGGATTCTTGGCTCAAGGACATGCCTGCTGTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

370

Amino Acids

41.05

Weight (kDa)

5.95

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPG_MGDP_dh_N PF03721 2 - 74 5.7e-21 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh PF00984 99 - 193 1.6e-32 UDP-glucose/GDP-mannose dehydrogenase family, central domain
UDPG_MGDP_dh_C PF03720 217 - 340 6.8e-29 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 754
AccB7I CCANNNNNTGG 1 cut(s) 294
AccII CGCG 1 cut(s) 186
AccIII TCCGGA 1 cut(s) 265
AciI CCGC 3 cut(s) 66, 184, 592
AclWI GGATC 5 cut(s) 174, 284, 353, 448, 798
AcoI YGGCCR 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 2 cut(s) 116, 1055
AfiI CCNNNNNNNGG 2 cut(s) 294, 853
AgsI TTSAA 7 cut(s) 18, 80, 175, 241, 625, 670, 943
AjnI CCWGG 3 cut(s) 231, 333, 504
AluBI AGCT 3 cut(s) 307, 316, 371
AluI AGCT 3 cut(s) 307, 316, 371
Alw21I GWGCWC 1 cut(s) 907
Alw26I GTCTC 2 cut(s) 616, 689
AlwI GGATC 5 cut(s) 174, 284, 353, 448, 798
Aor13HI TCCGGA 1 cut(s) 265
AoxI GGCC 3 cut(s) 217, 381, 529
ApeKI GCWGC 2 cut(s) 320, 835
Asp700I GAANNNNTTC 1 cut(s) 329
AspLEI GCGC 2 cut(s) 340, 742
AspS9I GGNCC 1 cut(s) 817
AsuC2I CCSGG 2 cut(s) 134, 682
AsuHPI GGTGA 1 cut(s) 583
AvaII GGWCC 1 cut(s) 817
BalI TGGCCA 1 cut(s) 219
BanII GRGCYC 1 cut(s) 848
BauI CACGAG 1 cut(s) 688
BbsI GAAGAC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 907
BbvI GCAGC 2 cut(s) 332, 847
BccI CCATC 3 cut(s) 209, 828, 995
BceAI ACGGC 1 cut(s) 1054
BcgI CGANNNNNNTGC 2 cut(s) 814, 848
BciT130I CCWGG 3 cut(s) 233, 335, 506
BclI TGATCA 1 cut(s) 564
BcnI CCSGG 2 cut(s) 134, 682
BcoDI GTCTC 2 cut(s) 616, 689
BfmI CTRYAG 2 cut(s) 761, 833
BfuAI ACCTGC 1 cut(s) 754
BglI GCCNNNNNGGC 1 cut(s) 335
BisI GCNGC 3 cut(s) 321, 592, 836
BlsI GCNGC 3 cut(s) 322, 593, 837
Bme1390I CCNGG 5 cut(s) 134, 233, 335, 506, 682
Bme18I GGWCC 1 cut(s) 817
BmgT120I GGNCC 1 cut(s) 817
BmiI GGNNCC 2 cut(s) 264, 818
BmrFI CCNGG 5 cut(s) 134, 233, 335, 506, 682
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 2 cut(s) 871, 921
BmuI ACTGGG 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 766, 1070
BpuMI CCSGG 2 cut(s) 134, 682
Bsa29I ATCGAT 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 689
BsaJI CCNNGG 4 cut(s) 69, 147, 681, 852
BsaWI WCCGGW 3 cut(s) 211, 265, 386
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 853
Bse1I ACTGG 1 cut(s) 56
Bse3DI GCAATG 2 cut(s) 369, 532
BseAI TCCGGA 1 cut(s) 265
BseBI CCWGG 3 cut(s) 233, 335, 506
BseCI ATCGAT 1 cut(s) 6
BseDI CCNNGG 4 cut(s) 69, 147, 681, 852
BseGI GGATG 3 cut(s) 220, 820, 886
BseLI CCNNNNNNNGG 2 cut(s) 294, 853
BseMI GCAATG 2 cut(s) 369, 532
BseMII CTCAG 2 cut(s) 414, 762
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 788
BseXI GCAGC 2 cut(s) 332, 847
Bsh1236I CGCG 1 cut(s) 186
Bsh1285I CGRYCG 2 cut(s) 184, 1062
BshFI GGCC 3 cut(s) 219, 383, 531
BshVI ATCGAT 1 cut(s) 6
BsiEI CGRYCG 2 cut(s) 184, 1062
BsiHKAI GWGCWC 1 cut(s) 907
BsiSI CCGG 5 cut(s) 134, 212, 266, 387, 681
BslFI GGGAC 6 cut(s) 38, 166, 698, 746, 830, 947
BslI CCNNNNNNNGG 2 cut(s) 294, 853
BsmAI GTCTC 2 cut(s) 616, 689
BsmFI GGGAC 6 cut(s) 38, 166, 698, 746, 830, 947
BsmI GAATGC 4 cut(s) 331, 364, 665, 918
BsnI GGCC 3 cut(s) 219, 383, 531
Bso31I GGTCTC 1 cut(s) 689
Bsp1286I GDGCHC 2 cut(s) 848, 907
Bsp13I TCCGGA 1 cut(s) 265
BspACI CCGC 3 cut(s) 66, 184, 592
BspANI GGCC 3 cut(s) 219, 383, 531
BspCNI CTCAG 2 cut(s) 413, 763
BspDI ATCGAT 1 cut(s) 6
BspEI TCCGGA 1 cut(s) 265
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 264, 818
BspMAI CTGCAG 2 cut(s) 765, 837
BspMI ACCTGC 1 cut(s) 754
BspPI GGATC 5 cut(s) 174, 284, 353, 448, 798
BspTNI GGTCTC 1 cut(s) 689
BsrDI GCAATG 2 cut(s) 369, 532
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 4 cut(s) 69, 147, 681, 852
BssSI CACGAG 1 cut(s) 688
Bst2BI CACGAG 1 cut(s) 688
Bst2UI CCWGG 3 cut(s) 233, 335, 506
Bst4CI ACNGT 3 cut(s) 52, 631, 856
Bst6I CTCTTC 1 cut(s) 619
BstAPI GCANNNNNTGC 2 cut(s) 251, 326
BstC8I GCNNGC 4 cut(s) 318, 460, 987, 1098
BstDEI CTNAG 2 cut(s) 400, 771
BstDSI CCRYGG 1 cut(s) 852
BstF5I GGATG 3 cut(s) 220, 820, 886
BstFNI CGCG 1 cut(s) 186
BstHHI GCGC 2 cut(s) 340, 742
BstMAI GTCTC 2 cut(s) 616, 689
BstMCI CGRYCG 2 cut(s) 184, 1062
BstMWI GCNNNNNNNGC 9 cut(s) 233, 242, 251, 313, 326, 335, 368, 389, 890
BstNI CCWGG 3 cut(s) 233, 335, 506
BstNSI RCATGY 2 cut(s) 979, 1096
BstSCI CCNGG 5 cut(s) 132, 231, 333, 504, 680
BstSFI CTRYAG 2 cut(s) 761, 833
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 332, 847
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 3 cut(s) 166, 345, 790
BstXI CCANNNNNNTGG 1 cut(s) 419
BstYI RGATCY 3 cut(s) 166, 345, 790
Bsu15I ATCGAT 1 cut(s) 6
BsuRI GGCC 3 cut(s) 219, 383, 531
BsuTUI ATCGAT 1 cut(s) 6
BtgI CCRYGG 1 cut(s) 852
BtsCI GGATG 3 cut(s) 220, 820, 886
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 4 cut(s) 63, 252, 360, 627
BveI ACCTGC 1 cut(s) 754
Cac8I GCNNGC 4 cut(s) 318, 460, 987, 1098
CfoI GCGC 2 cut(s) 340, 742
Cfr13I GGNCC 1 cut(s) 817
ClaI ATCGAT 1 cut(s) 6
CseI GACGC 1 cut(s) 955
CsiI ACCWGGT 1 cut(s) 504
Csp6I GTAC 2 cut(s) 115, 1054
CviAII CATG 4 cut(s) 413, 908, 976, 1093
CviQI GTAC 2 cut(s) 115, 1054
DdeI CTNAG 2 cut(s) 400, 771
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
Eco24I GRGCYC 1 cut(s) 848
Eco31I GGTCTC 1 cut(s) 689
Eco47I GGWCC 1 cut(s) 817
Eco57I CTGAAG 1 cut(s) 558
EcoRII CCWGG 3 cut(s) 231, 333, 504
EcoT38I GRGCYC 1 cut(s) 848
FaeI CATG 4 cut(s) 416, 911, 979, 1096
FalI AAGNNNNNCTT 4 cut(s) 578, 610, 728, 760
FaqI GGGAC 6 cut(s) 38, 166, 698, 746, 830, 947
FatI CATG 4 cut(s) 412, 907, 975, 1092
FbaI TGATCA 1 cut(s) 564
Fnu4HI GCNGC 3 cut(s) 321, 592, 836
FokI GGATG 3 cut(s) 227, 807, 893
FriOI GRGCYC 1 cut(s) 848
Fsp4HI GCNGC 3 cut(s) 321, 592, 836
GlaI GCGC 2 cut(s) 339, 741
GluI GCNGC 3 cut(s) 321, 592, 836
HaeIII GGCC 3 cut(s) 219, 383, 531
HapII CCGG 5 cut(s) 134, 212, 266, 387, 681
HgaI GACGC 1 cut(s) 955
HhaI GCGC 2 cut(s) 340, 742
Hin1II CATG 4 cut(s) 416, 911, 979, 1096
Hin6I GCGC 2 cut(s) 338, 740
HinP1I GCGC 2 cut(s) 338, 740
HinfI GANTC 8 cut(s) 108, 121, 468, 660, 781, 826, 1044, 1076
HpaII CCGG 5 cut(s) 134, 212, 266, 387, 681
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 2 cut(s) 601, 1054
Hpy188I TCNGA 9 cut(s) 25, 197, 403, 489, 501, 786, 825, 924, 1043
Hpy188III TCNNGA 6 cut(s) 127, 266, 598, 670, 943, 1063
Hpy8I GTNNAC 2 cut(s) 601, 1054
Hpy99I CGWCG 2 cut(s) 1016, 1019
HpyAV CCTTC 4 cut(s) 217, 235, 340, 484
HpyCH4III ACNGT 3 cut(s) 52, 631, 856
HpyCH4IV ACGT 1 cut(s) 1011
HpyCH4V TGCA 9 cut(s) 254, 362, 525, 545, 717, 763, 835, 918, 979
HpyF10VI GCNNNNNNNGC 9 cut(s) 233, 242, 251, 313, 326, 335, 368, 389, 890
HpyF3I CTNAG 2 cut(s) 400, 771
HpySE526I ACGT 1 cut(s) 1011
Hsp92II CATG 4 cut(s) 416, 911, 979, 1096
HspAI GCGC 2 cut(s) 338, 740
Kpn2I TCCGGA 1 cut(s) 265
Ksp22I TGATCA 1 cut(s) 564
LmnI GCTCC 2 cut(s) 389, 775
Lsp1109I GCAGC 2 cut(s) 332, 847
LweI GCATC 2 cut(s) 871, 921
MabI ACCWGGT 1 cut(s) 504
MaeII ACGT 1 cut(s) 1011
MaeIII GTNAC 1 cut(s) 766
MboII GAAGA 3 cut(s) 281, 606, 973
MfeI CAATTG 1 cut(s) 159
MflI RGATCY 3 cut(s) 166, 345, 790
MhlI GDGCHC 2 cut(s) 848, 907
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 3 cut(s) 159, 256, 435
MluNI TGGCCA 1 cut(s) 219
MmeI TCCRAC 3 cut(s) 48, 445, 1053
Mox20I TGGCCA 1 cut(s) 219
MroI TCCGGA 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 329
MscI TGGCCA 1 cut(s) 219
Msp20I TGGCCA 1 cut(s) 219
MspI CCGG 5 cut(s) 134, 212, 266, 387, 681
MspR9I CCNGG 5 cut(s) 134, 233, 335, 506, 682
MunI CAATTG 1 cut(s) 159
Mva1269I GAATGC 4 cut(s) 331, 364, 665, 918
MvaI CCWGG 3 cut(s) 233, 335, 506
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 9 cut(s) 233, 242, 251, 313, 326, 335, 368, 389, 890
NciI CCSGG 2 cut(s) 134, 682
NlaIII CATG 4 cut(s) 416, 911, 979, 1096
NlaIV GGNNCC 2 cut(s) 264, 818
NmeAIII GCCGAG 3 cut(s) 94, 172, 328
NspI RCATGY 2 cut(s) 979, 1096
PcsI WCGNNNNNNNCGW 1 cut(s) 1047
PctI GAATGC 4 cut(s) 331, 364, 665, 918
PdmI GAANNNNTTC 1 cut(s) 329
PfeI GAWTC 8 cut(s) 108, 121, 468, 660, 781, 826, 1044, 1076
PflMI CCANNNNNTGG 1 cut(s) 294
PkrI GCNGC 3 cut(s) 322, 593, 837
Ple19I CGATCG 1 cut(s) 1062
Psp6I CCWGG 3 cut(s) 231, 333, 504
PspGI CCWGG 3 cut(s) 231, 333, 504
PspN4I GGNNCC 2 cut(s) 264, 818
PspPI GGNCC 1 cut(s) 817
PstI CTGCAG 2 cut(s) 765, 837
PsuI RGATCY 3 cut(s) 166, 345, 790
PvuI CGATCG 1 cut(s) 1062
RsaI GTAC 2 cut(s) 116, 1055
RsaNI GTAC 2 cut(s) 115, 1054
SatI GCNGC 3 cut(s) 321, 592, 836
Sau96I GGNCC 1 cut(s) 817
ScrFI CCNGG 5 cut(s) 134, 233, 335, 506, 682
SduI GDGCHC 2 cut(s) 848, 907
SetI ASST 7 cut(s) 309, 318, 373, 507, 573, 768, 1014
SexAI ACCWGGT 1 cut(s) 504
SfaNI GCATC 2 cut(s) 871, 921
SfcI CTRYAG 2 cut(s) 761, 833
SinI GGWCC 1 cut(s) 817
SmlI CTYRAG 2 cut(s) 745, 1085
SmoI CTYRAG 2 cut(s) 745, 1085
Sse9I AATT 3 cut(s) 159, 256, 435
SsiI CCGC 3 cut(s) 66, 184, 592
StyD4I CCNGG 5 cut(s) 132, 231, 333, 504, 680
TaaI ACNGT 3 cut(s) 52, 631, 856
TaiI ACGT 1 cut(s) 1014
TaqI TCGA 9 cut(s) 6, 128, 443, 617, 797, 951, 999, 1017, 1058
TaqII GACCGA 1 cut(s) 941
TasI AATT 3 cut(s) 159, 256, 435
TatI WGTACW 1 cut(s) 1053
TauI GCSGC 1 cut(s) 594
TfiI GAWTC 8 cut(s) 108, 121, 468, 660, 781, 826, 1044, 1076
TscAI CASTG 4 cut(s) 63, 252, 360, 634
TseI GCWGC 2 cut(s) 320, 835
TspDTI ATGAA 3 cut(s) 815, 818, 1036
TspRI CASTG 4 cut(s) 63, 252, 360, 634
Van91I CCANNNNNTGG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 817
XceI RCATGY 2 cut(s) 979, 1096
XmnI GAANNNNTTC 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.