Rorug06G0449400

UDP-glucose 6-dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
57931743 .. 57936507
4765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0449400.1

Sequence Viewer

Length: 1224 bp
ATGCAACAGCAGCAACAAGAAGCCATAATGCAGCAAGCGCTTCTTCAACAGCAGCAACAGCACATGTACCATCCTGGTGTTCTTGCAGCTGCTATGTCTCAGATGGAGCCTATCCCAAGTGGAAATCTGCCTCCGGGCTTTGACCCGTCTACGTGCCACAGTGTCTATGTCGGAAATATTCATGTTAATGTCACCGAGAAGCTTCTTGCCGAAGTTTTCCAGAGCGTTGGTCCTCTTGCAGGATGCAAACTCATCAGAAAGGATAAGTCGTCATATGGATTTGTTGACTACCTTGATCGGACTTCTGCAGCCCTTGCAATAATGAGTTTGCATGGACGCCAACTTTACGGCCTTGCACTTAAGGTGAATTGGGCGTATGCCAATAGCCAGAGGGAAGACACTTCAGGGCACTACAATATATTTGTTGGTGATCTTAGTCCAGAGATTACAGATGCAACTTTATTTGCTTGCTTCTCGGTCTATCCTAGTTGTTCTGACGCAAGGGTCATGTGGGATCACAAAACTGGCCGCTCAAAAGGATATGGCTTTGTTTCTTTCCGTAACCAGCAGGATGCTCAGAGTGCTATCAATGATTTATCCGGTAAATGGCTTGGAAACAGGCAAATAAGATGCAACTGGGCAACTAAAAGTGCTAGTTCCAGTGAAGAGAAGCAGAGTAATGACACACAAAATGCAGTTGTACTGACAAATGAATCTTCAGATGGAGGTCAGGAGAACTCCAATGAAGAGGCCCCAGAAAATAATCAAGCATATACGACTGTCTATGTTGGCAACCTTCCCCATGAGATCACTCAAGCTGAACTTCATAGTCAGTTTCATGCTCTTGGGGCTGGGGTTATTGAGGAAGTGCGTGTGCAGAGGGATAAAGGTTTTGGATTTGTGAGATACAACACTCATGAAGAAGCTGCCATGGCCATCCAAATGGGTAATGGCAGGATAATTCGTGGAAAGTCCATGAAGTGCTCATGGGGTAGCAAGCCGACTCCACCTGGGTTACCTTCGAATCCTCTACCACCCCCTGCTCAACCCTATCAGATCCTTCCAAATGCTGCTATGAACCAAGGCTATTCTCCAGCCGAGTTGTTGGCTTATCGGCGTCAACTTGCCTTAAGTCAGGCTGCCATGAGCTCTGGTGGAACCCAACCTATGTATGAGGGATATCCCAACACTTCGTCAGGTCACCAGCTCATGTATTATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

407

Amino Acids

44.75

Weight (kDa)

6.18

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 55 - 120 3e-11 RNA recognition motif
RRM_1 PF00076 140 - 210 1.7e-18 RNA recognition motif
RRM_1 PF00076 261 - 326 4.4e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 503
AccBSI CCGCTC 1 cut(s) 531
AccI GTMKAC 1 cut(s) 149
AciI CCGC 1 cut(s) 529
AclWI GGATC 2 cut(s) 522, 1051
AcoI YGGCCR 2 cut(s) 526, 933
AcuI CTGAAG 2 cut(s) 387, 702
AcyI GRCGYC 2 cut(s) 337, 1117
AfaI GTAC 2 cut(s) 68, 702
AfeI AGCGCT 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 239, 606
AflII CTTAAG 2 cut(s) 359, 1129
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 2 cut(s) 73, 1009
AluBI AGCT 6 cut(s) 89, 202, 818, 926, 1149, 1207
AluI AGCT 6 cut(s) 89, 202, 818, 926, 1149, 1207
Alw21I GWGCWC 2 cut(s) 986, 1151
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 2 cut(s) 522, 1051
Aor51HI AGCGCT 1 cut(s) 39
AoxI GGCC 4 cut(s) 349, 526, 750, 933
ApeKI GCWGC 9 cut(s) 10, 31, 52, 86, 89, 308, 926, 1070, 1139
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 230, 751
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 4 cut(s) 184, 376, 440, 1193
AsuII TTCGAA 1 cut(s) 1022
AvaII GGWCC 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 411
BalI TGGCCA 1 cut(s) 935
BanII GRGCYC 1 cut(s) 1151
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 2 cut(s) 986, 1151
BbvI GCAGC 9 cut(s) 22, 43, 64, 76, 98, 320, 913, 1057, 1126
BccI CCATC 4 cut(s) 78, 97, 716, 944
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 2 cut(s) 75, 1011
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 2 cut(s) 486, 654
BfmI CTRYAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 41
BfrI CTTAAG 2 cut(s) 359, 1129
Bme1390I CCNGG 3 cut(s) 75, 135, 1011
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 230, 751
BmiI GGNNCC 3 cut(s) 108, 753, 1159
BmrFI CCNGG 3 cut(s) 75, 135, 1011
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 4 cut(s) 233, 442, 562, 620
BmuI ACTGGG 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 402
BpmI CTGGAG 1 cut(s) 1077
Bpu14I TTCGAA 1 cut(s) 1022
BpuEI CTTGAG 1 cut(s) 798
BpuMI CCSGG 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 153
BsaHI GRCGYC 2 cut(s) 337, 1117
BsaJI CCNNGG 3 cut(s) 930, 1010, 1081
BsaWI WCCGGW 1 cut(s) 599
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 606
Bse1I ACTGG 3 cut(s) 529, 641, 660
BseBI CCWGG 2 cut(s) 75, 1011
BseDI CCNNGG 3 cut(s) 930, 1010, 1081
BseGI GGATG 4 cut(s) 70, 248, 577, 936
BseLI CCNNNNNNNGG 2 cut(s) 239, 606
BseMII CTCAG 2 cut(s) 113, 590
BseNI ACTGG 3 cut(s) 529, 641, 660
BseSI GKGCMC 1 cut(s) 411
BseXI GCAGC 9 cut(s) 22, 43, 64, 76, 98, 320, 913, 1057, 1126
BseYI CCCAGC 1 cut(s) 851
BsgI GTGCAG 1 cut(s) 896
BshFI GGCC 4 cut(s) 351, 528, 752, 935
BsiHKAI GWGCWC 2 cut(s) 986, 1151
BsiSI CCGG 2 cut(s) 134, 600
BslI CCNNNNNNNGG 2 cut(s) 239, 606
BsmAI GTCTC 1 cut(s) 102
BsnI GGCC 4 cut(s) 351, 528, 752, 935
Bsp119I TTCGAA 1 cut(s) 1022
Bsp1286I GDGCHC 3 cut(s) 411, 986, 1151
Bsp143I GATC 5 cut(s) 295, 430, 514, 807, 1056
Bsp19I CCATGG 1 cut(s) 930
BspACI CCGC 1 cut(s) 529
BspANI GGCC 4 cut(s) 351, 528, 752, 935
BspCNI CTCAG 2 cut(s) 112, 589
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 3 cut(s) 108, 753, 1159
BspMAI CTGCAG 1 cut(s) 310
BspPI GGATC 2 cut(s) 522, 1051
BspT104I TTCGAA 1 cut(s) 1022
BspTI CTTAAG 2 cut(s) 359, 1129
BsrBI CCGCTC 1 cut(s) 531
BsrI ACTGG 3 cut(s) 529, 641, 660
BssECI CCNNGG 3 cut(s) 930, 1010, 1081
BssMI GATC 5 cut(s) 295, 430, 514, 807, 1056
BssNI GRCGYC 2 cut(s) 337, 1117
BssT1I CCWWGG 2 cut(s) 930, 1081
Bst2UI CCWGG 2 cut(s) 75, 1011
Bst4CI ACNGT 2 cut(s) 161, 781
Bst6I CTCTTC 2 cut(s) 660, 741
BstACI GRCGYC 2 cut(s) 337, 1117
BstAFI CTTAAG 2 cut(s) 359, 1129
BstAPI GCANNNNNTGC 1 cut(s) 314
BstBAI YACGTR 1 cut(s) 153
BstBI TTCGAA 1 cut(s) 1022
BstC8I GCNNGC 3 cut(s) 36, 469, 998
BstDEI CTNAG 3 cut(s) 99, 434, 576
BstDSI CCRYGG 1 cut(s) 930
BstEII GGTNACC 2 cut(s) 1014, 1199
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 4 cut(s) 70, 248, 577, 936
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 5 cut(s) 298, 433, 517, 810, 1059
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 5 cut(s) 295, 430, 514, 807, 1056
BstMWI GCNNNNNNNGC 7 cut(s) 10, 37, 58, 314, 581, 848, 932
BstNI CCWGG 2 cut(s) 75, 1011
BstNSI RCATGY 1 cut(s) 67
BstPI GGTNACC 2 cut(s) 1014, 1199
BstSCI CCNGG 3 cut(s) 73, 133, 1009
BstSFI CTRYAG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 411
BstV1I GCAGC 9 cut(s) 22, 43, 64, 76, 98, 320, 913, 1057, 1126
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 1056
BstXI CCANNNNNNTGG 2 cut(s) 227, 943
BstYI RGATCY 1 cut(s) 1056
BsuRI GGCC 4 cut(s) 351, 528, 752, 935
BtgI CCRYGG 1 cut(s) 930
BtsCI GGATG 4 cut(s) 70, 248, 577, 936
BtsIMutI CAGTG 2 cut(s) 166, 667
Cac8I GCNNGC 3 cut(s) 36, 469, 998
CciI TCATGA 1 cut(s) 916
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 230, 751
CseI GACGC 3 cut(s) 345, 506, 1106
Csp6I GTAC 2 cut(s) 67, 701
CviQI GTAC 2 cut(s) 67, 701
DdeI CTNAG 3 cut(s) 99, 434, 576
DpnI GATC 5 cut(s) 297, 432, 516, 809, 1058
DpnII GATC 5 cut(s) 295, 430, 514, 807, 1056
DrdI GACNNNNNNGTC 1 cut(s) 503
DseDI GACNNNNNNGTC 1 cut(s) 503
EaeI YGGCCR 2 cut(s) 526, 933
Eam1104I CTCTTC 2 cut(s) 660, 741
EarI CTCTTC 2 cut(s) 660, 741
Ecl136II GAGCTC 1 cut(s) 1149
Eco130I CCWWGG 2 cut(s) 930, 1081
Eco24I GRGCYC 1 cut(s) 1151
Eco32I GATATC 1 cut(s) 1181
Eco47I GGWCC 1 cut(s) 230
Eco47III AGCGCT 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 1149
Eco57I CTGAAG 2 cut(s) 387, 702
Eco91I GGTNACC 2 cut(s) 1014, 1199
EcoICRI GAGCTC 1 cut(s) 1149
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 751
EcoO65I GGTNACC 2 cut(s) 1014, 1199
EcoRII CCWGG 2 cut(s) 73, 1009
EcoRV GATATC 1 cut(s) 1181
EcoT14I CCWWGG 2 cut(s) 930, 1081
EcoT38I GRGCYC 1 cut(s) 1151
ErhI CCWWGG 2 cut(s) 930, 1081
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 807, 839
FauNDI CATATG 1 cut(s) 274
FblI GTMKAC 1 cut(s) 149
FokI GGATG 4 cut(s) 57, 255, 584, 923
FriOI GRGCYC 1 cut(s) 1151
FspBI CTAG 2 cut(s) 486, 654
GlaI GCGC 1 cut(s) 39
GsaI CCCAGC 1 cut(s) 855
GsuI CTGGAG 1 cut(s) 1077
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 4 cut(s) 351, 528, 752, 935
HapII CCGG 2 cut(s) 134, 600
HgaI GACGC 3 cut(s) 345, 506, 1106
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 2 cut(s) 337, 1117
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HincII GTYRAC 2 cut(s) 286, 1121
HindII GTYRAC 2 cut(s) 286, 1121
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 3 cut(s) 713, 1003, 1024
HpaII CCGG 2 cut(s) 134, 600
HphI GGTGA 4 cut(s) 184, 376, 440, 1193
Hpy166II GTNNAC 3 cut(s) 150, 286, 1121
Hpy188I TCNGA 8 cut(s) 102, 173, 257, 300, 496, 579, 721, 1056
Hpy188III TCNNGA 4 cut(s) 220, 440, 731, 917
Hpy8I GTNNAC 3 cut(s) 150, 286, 1121
HpyAV CCTTC 3 cut(s) 806, 1029, 1070
HpyCH4III ACNGT 2 cut(s) 161, 781
HpyCH4IV ACGT 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 37, 58, 314, 581, 848, 932
HpyF3I CTNAG 3 cut(s) 99, 434, 576
HpySE526I ACGT 1 cut(s) 152
Hsp92I GRCGYC 2 cut(s) 337, 1117
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 5 cut(s) 295, 430, 514, 807, 1056
LmnI GCTCC 1 cut(s) 106
Lsp1109I GCAGC 9 cut(s) 22, 43, 64, 76, 98, 320, 913, 1057, 1126
LweI GCATC 4 cut(s) 233, 442, 562, 620
MaeI CTAG 2 cut(s) 486, 654
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 4 cut(s) 190, 560, 1014, 1199
MalI GATC 5 cut(s) 297, 432, 516, 809, 1058
MbiI CCGCTC 1 cut(s) 531
MboI GATC 5 cut(s) 295, 430, 514, 807, 1056
MboII GAAGA 6 cut(s) 35, 407, 677, 708, 758, 932
MflI RGATCY 1 cut(s) 1056
MhlI GDGCHC 3 cut(s) 411, 986, 1151
MlsI TGGCCA 1 cut(s) 935
MluCI AATT 2 cut(s) 367, 960
MluNI TGGCCA 1 cut(s) 935
MlyI GAGTC 1 cut(s) 997
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 9 cut(s) 141, 243, 384, 719, 742, 856, 873, 1038, 1168
Mox20I TGGCCA 1 cut(s) 935
MscI TGGCCA 1 cut(s) 935
MseI TTAA 3 cut(s) 186, 360, 1130
MslI CAYNNNNRTG 3 cut(s) 75, 186, 941
Msp20I TGGCCA 1 cut(s) 935
MspA1I CMGCKG 1 cut(s) 89
MspCI CTTAAG 2 cut(s) 359, 1129
MspI CCGG 2 cut(s) 134, 600
MspR9I CCNGG 3 cut(s) 75, 135, 1011
MvaI CCWGG 2 cut(s) 75, 1011
MwoI GCNNNNNNNGC 7 cut(s) 10, 37, 58, 314, 581, 848, 932
NciI CCSGG 1 cut(s) 135
NcoI CCATGG 1 cut(s) 930
NdeI CATATG 1 cut(s) 274
NdeII GATC 5 cut(s) 295, 430, 514, 807, 1056
NlaIV GGNNCC 3 cut(s) 108, 753, 1159
NmeAIII GCCGAG 1 cut(s) 1123
NmuCI GTSAC 2 cut(s) 190, 1199
NspI RCATGY 1 cut(s) 67
NspV TTCGAA 1 cut(s) 1022
PagI TCATGA 1 cut(s) 916
PciI ACATGT 1 cut(s) 63
PfeI GAWTC 2 cut(s) 713, 1024
PleI GAGTC 1 cut(s) 997
PpsI GAGTC 1 cut(s) 997
Ppu21I YACGTR 1 cut(s) 153
PscI ACATGT 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 1151
Psp6I CCWGG 2 cut(s) 73, 1009
PspEI GGTNACC 2 cut(s) 1014, 1199
PspFI CCCAGC 1 cut(s) 851
PspGI CCWGG 2 cut(s) 73, 1009
PspN4I GGNNCC 3 cut(s) 108, 753, 1159
PspPI GGNCC 2 cut(s) 230, 751
PstI CTGCAG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 1056
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 2 cut(s) 68, 702
RsaNI GTAC 2 cut(s) 67, 701
RseI CAYNNNNRTG 3 cut(s) 75, 186, 941
SacI GAGCTC 1 cut(s) 1151
SaqAI TTAA 3 cut(s) 186, 360, 1130
Sau3AI GATC 5 cut(s) 295, 430, 514, 807, 1056
Sau96I GGNCC 2 cut(s) 230, 751
SchI GAGTC 1 cut(s) 997
ScrFI CCNGG 3 cut(s) 75, 135, 1011
SduI GDGCHC 3 cut(s) 411, 986, 1151
SfaNI GCATC 4 cut(s) 233, 442, 562, 620
SfcI CTRYAG 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 1022
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 3 cut(s) 75, 186, 941
SmlI CTYRAG 3 cut(s) 359, 813, 1129
SmoI CTYRAG 3 cut(s) 359, 813, 1129
Sse9I AATT 2 cut(s) 367, 960
SsiI CCGC 1 cut(s) 529
SspI AATATT 1 cut(s) 178
SspMI CTAG 2 cut(s) 486, 654
SstI GAGCTC 1 cut(s) 1151
StyD4I CCNGG 3 cut(s) 73, 133, 1009
StyI CCWWGG 2 cut(s) 930, 1081
TaaI ACNGT 2 cut(s) 161, 781
TaiI ACGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 1022
TaqII GACCGA 1 cut(s) 466
TasI AATT 2 cut(s) 367, 960
TatI WGTACW 1 cut(s) 700
TauI GCSGC 1 cut(s) 531
TfiI GAWTC 2 cut(s) 713, 1024
Tru1I TTAA 3 cut(s) 186, 360, 1130
Tru9I TTAA 3 cut(s) 186, 360, 1130
TscAI CASTG 2 cut(s) 166, 667
TseFI GTSAC 2 cut(s) 190, 1199
TseI GCWGC 9 cut(s) 10, 31, 52, 86, 89, 308, 926, 1070, 1139
Tsp45I GTSAC 2 cut(s) 190, 1199
TspDTI ATGAA 8 cut(s) 170, 726, 759, 815, 827, 933, 992, 1091
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 2 cut(s) 166, 667
Vha464I CTTAAG 2 cut(s) 359, 1129
VpaK11BI GGWCC 1 cut(s) 230
XagI CCTNNNNNAGG 1 cut(s) 237
XceI RCATGY 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 947
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 2 cut(s) 486, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.