Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001872

Physical Location & Seq

Genomic Coordinates Forward (+)

3547418 .. 3548284

Gene Structure 867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCTGTGATTGCCCTTAAGTGCCCAGATATTGAAGTAGCTGTTGTTGACATTTCTGTGTCTAGGATCAATGCCTGGAACAGTGATACGCTCCCCATATATGAGCCAGGCCTTGATGATGTGGTGAAGCAGCGCAGAGGAAAGAACCTCTTCTTCAGCACTGATGTTGAAAAACACGTTATGGAGGCAGACATTGTCTTTGTTTCCGTTAACACGCCCACCAAAACCCAGGGTCTTGGAGCTGGCAAAGCCGCTGATCTTACCTACTGGGAGAGTGCTGCTCGTATGATTGCAGATGTATCAAAGTCTGACAAAATTGTGGTTGAGAAGTCAACTGTCCCAGTCAAAACAGCTGAGGCCATTGAAAAGATTCTGACCCACAACAGCAAAGGCATCAACTTCCAAATTCTTTCAAATCCTGAGTTCCTTGCTGAGGGAACTGCAATCGAGGACCTTTTTAGCCCAGATCGTGTCCTCATTGGAGGTCGGGAAACCCCAGCAGGCCAAAAGGCAATCCAAGCACTCAAGTCAGTTTATGCCCATTGGGTCCCTGAAGAAAGAATCATCTGCTCTAATCTGTGGTCTGCTGAGCTTTCAAAGCTTGCTGCCAATGCCTTCTTGGCACAGAGGATATCTTCTGTTAATGCCATATCTGCACTCTGTGAGGCAACTGGTGCAAATGTCCAAGAAGTGGCGCATGCTGTTGGCAAGGACACAAGAATTGGGCCCAAGTTTTTAAATGCCAGTGTTGGTTTTGGTGGGTCTTGCTTCCAGAAGGATATTTTGAACTTGGTATATATCTGCGAGTGTAATGGCCTTCCTGAGGTTGCAAATTACTGGAAACAAGTCATTAAGATCGATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003979 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006022 GO:0006023 GO:0006024 GO:0006065 GO:0006082 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009225 GO:0009226 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019752 GO:0030203 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046398 GO:0046483 GO:0055086 GO:0055114 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

289

Amino Acids

31.27

Weight (kDa)

5.63

Isoelectric Point (pI)

25.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPG_MGDP_dh_N	PF03721	2 - 170	3e-55	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDPG_MGDP_dh	PF00984	194 - 286	8.8e-32	UDP-glucose/GDP-mannose dehydrogenase family, central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26570
fragaria_vesca	FvH4_4g30330 FvH4_4g30330 FvH4_4g30330 FvH4_4g30330 FvH4_5g14230 FvH4_5g14230 FvH4_5g14230 FvH4_5g14230
malus_domestica	MD06G1200200.v1.1 MD13G1064400.v1.1 MD14G1209700.v1.1 MD16G1062900.v1.1
prunus_persica	Prupe.1G284300_v2.0.a1 Prupe.5G202800_v2.0.a1
pyrus_communis	pycom06g17680 pycom13g05690 pycom14g17320 pycom16g05500
rosa_chinensis	RchiOBHm_Chr4g0438621 RchiOBHm_Chr7g0182711
rosa_laevigata	RLG00000005108 RLG00000006346
rosa_multiflora	Rmu_co8409269.1_g000001 Rmu_sc0000014.1_g000040 Rmu_sc0006646.1_g000010
rosa_roxburghii	Rroxscaffold_3G00271060 Rroxscaffold_5G00379610
rosa_rugosa	Rorug04G0311900 Rorug06G0449100 Rorug06G0449100 Rorug06G0449200 Rorug06G0449300 Rorug06G0449300 Rorug06G0449400
rosa_samantha	Rh4AG362300 Rh4BG373700 Rh4CG387600 Rh4DG368400 Rh7AG053100 Rh7BG052700 Rh7CG054200 Rh7DG052500
rosa_wichuraiana	Rw0G006700 Rw0G016650 Rw7G004320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	691
AciI	CCGC	1 cut(s)	252
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	405
AcuI	CTGAAG	2 cut(s)	139, 573
AdeI	CACNNNGTG	1 cut(s)	662
AfiI	CCNNNNNNNGG	3 cut(s)	433, 691, 823
AflII	CTTAAG	1 cut(s)	17
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	6 cut(s)	35, 170, 365, 414, 597, 787
AjnI	CCWGG	3 cut(s)	74, 106, 228
AluBI	AGCT	5 cut(s)	41, 242, 353, 592, 601
AluI	AGCT	5 cut(s)	41, 242, 353, 592, 601
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	5 cut(s)	109, 357, 502, 725, 814
ApaI	GGGCCC	1 cut(s)	729
ApeKI	GCWGC	3 cut(s)	130, 278, 605
ApoI	RAATTY	1 cut(s)	405
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
Asp700I	GAANNNNTTC	2 cut(s)	149, 369
AspLEI	GCGC	2 cut(s)	135, 697
AspS9I	GGNCC	4 cut(s)	451, 547, 725, 726
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	2 cut(s)	451, 547
AxyI	CCTNAGG	1 cut(s)	822
BaeGI	GKGCMC	2 cut(s)	26, 729
BanII	GRGCYC	1 cut(s)	729
BbvCI	CCTCAGC	2 cut(s)	354, 432
BbvI	GCAGC	3 cut(s)	142, 265, 592
BciT130I	CCWGG	3 cut(s)	76, 108, 230
BfaI	CTAG	2 cut(s)	63, 865
BfrI	CTTAAG	1 cut(s)	17
BglI	GCCNNNNNGGC	1 cut(s)	620
BisI	GCNGC	4 cut(s)	131, 252, 279, 606
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	4 cut(s)	132, 253, 280, 607
Bme1390I	CCNGG	3 cut(s)	76, 108, 230
Bme18I	GGWCC	2 cut(s)	451, 547
BmgT120I	GGNCC	4 cut(s)	451, 547, 725, 726
BmiI	GGNNCC	3 cut(s)	548, 549, 727
BmrFI	CCNGG	3 cut(s)	76, 108, 230
BmrI	ACTGGG	2 cut(s)	277, 335
BmsI	GCATC	1 cut(s)	402
BmuI	ACTGGG	2 cut(s)	277, 335
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
Bpu10I	CCTNAGC	2 cut(s)	354, 432
Bpu1102I	GCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	509
Bsa29I	ATCGAT	1 cut(s)	858
BsaJI	CCNNGG	2 cut(s)	228, 229
Bsc4I	CCNNNNNNNGG	3 cut(s)	433, 691, 823
Bse1I	ACTGG	5 cut(s)	272, 341, 676, 744, 842
Bse21I	CCTNAGG	1 cut(s)	822
BseBI	CCWGG	3 cut(s)	76, 108, 230
BseCI	ATCGAT	1 cut(s)	858
BseDI	CCNNGG	2 cut(s)	228, 229
BseLI	CCNNNNNNNGG	3 cut(s)	433, 691, 823
BseMII	CTCAG	5 cut(s)	345, 411, 423, 579, 813
BseNI	ACTGG	5 cut(s)	272, 341, 676, 744, 842
BseSI	GKGCMC	2 cut(s)	26, 729
BseXI	GCAGC	3 cut(s)	142, 265, 592
BseYI	CCCAGC	1 cut(s)	496
BsgI	GTGCAG	1 cut(s)	639
BshFI	GGCC	5 cut(s)	111, 359, 504, 727, 816
BshVI	ATCGAT	1 cut(s)	858
BslFI	GGGAC	2 cut(s)	323, 533
BslI	CCNNNNNNNGG	3 cut(s)	433, 691, 823
BsmFI	GGGAC	2 cut(s)	323, 533
BsnI	GGCC	5 cut(s)	111, 359, 504, 727, 816
Bsp120I	GGGCCC	1 cut(s)	725
Bsp1286I	GDGCHC	2 cut(s)	26, 729
Bsp143I	GATC	5 cut(s)	66, 256, 466, 855, 859
Bsp1720I	GCTNAGC	1 cut(s)	588
BspACI	CCGC	1 cut(s)	252
BspANI	GGCC	5 cut(s)	111, 359, 504, 727, 816
BspCNI	CTCAG	5 cut(s)	346, 412, 424, 580, 814
BspDI	ATCGAT	1 cut(s)	858
BspLI	GGNNCC	3 cut(s)	548, 549, 727
BspPI	GGATC	1 cut(s)	74
BspTI	CTTAAG	1 cut(s)	17
BsrI	ACTGG	5 cut(s)	272, 341, 676, 744, 842
BssECI	CCNNGG	2 cut(s)	228, 229
BssMI	GATC	5 cut(s)	66, 256, 466, 855, 859
Bst2UI	CCWGG	3 cut(s)	76, 108, 230
Bst4CI	ACNGT	2 cut(s)	83, 337
Bst6I	CTCTTC	1 cut(s)	155
BstAFI	CTTAAG	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstC8I	GCNNGC	4 cut(s)	244, 502, 603, 699
BstDEI	CTNAG	5 cut(s)	354, 420, 432, 588, 822
BstENI	CCTNNNNNAGG	2 cut(s)	431, 821
BstHHI	GCGC	2 cut(s)	135, 697
BstKTI	GATC	5 cut(s)	69, 259, 469, 858, 862
BstMBI	GATC	5 cut(s)	66, 256, 466, 855, 859
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 248, 518, 598, 611, 620, 653, 674
BstNI	CCWGG	3 cut(s)	76, 108, 230
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	3 cut(s)	74, 106, 228
BstSLI	GKGCMC	2 cut(s)	26, 729
BstV1I	GCAGC	3 cut(s)	142, 265, 592
BstXI	CCANNNNNNTGG	1 cut(s)	236
Bsu15I	ATCGAT	1 cut(s)	858
Bsu36I	CCTNAGG	1 cut(s)	822
BsuRI	GGCC	5 cut(s)	111, 359, 504, 727, 816
BsuTUI	ATCGAT	1 cut(s)	858
BtsIMutI	CAGTG	3 cut(s)	88, 159, 751
Cac8I	GCNNGC	4 cut(s)	244, 502, 603, 699
CfoI	GCGC	2 cut(s)	135, 697
Cfr13I	GGNCC	4 cut(s)	451, 547, 725, 726
ClaI	ATCGAT	1 cut(s)	858
CviAII	CATG	1 cut(s)	698
DdeI	CTNAG	5 cut(s)	354, 420, 432, 588, 822
DpnI	GATC	5 cut(s)	68, 258, 468, 857, 861
DpnII	GATC	5 cut(s)	66, 256, 466, 855, 859
DraI	TTTAAA	1 cut(s)	738
DraIII	CACNNNGTG	1 cut(s)	662
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco147I	AGGCCT	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	729
Eco32I	GATATC	1 cut(s)	633
Eco47I	GGWCC	2 cut(s)	451, 547
Eco57I	CTGAAG	2 cut(s)	139, 573
Eco81I	CCTNAGG	1 cut(s)	822
EcoNI	CCTNNNNNAGG	2 cut(s)	431, 821
EcoO109I	RGGNCCY	2 cut(s)	451, 547
EcoRII	CCWGG	3 cut(s)	74, 106, 228
EcoRV	GATATC	1 cut(s)	633
EcoT38I	GRGCYC	1 cut(s)	729
FaeI	CATG	1 cut(s)	701
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	2 cut(s)	323, 533
FatI	CATG	1 cut(s)	697
Fnu4HI	GCNGC	4 cut(s)	131, 252, 279, 606
FriOI	GRGCYC	1 cut(s)	729
Fsp4HI	GCNGC	4 cut(s)	131, 252, 279, 606
FspBI	CTAG	2 cut(s)	63, 865
GlaI	GCGC	2 cut(s)	134, 696
GluI	GCNGC	4 cut(s)	131, 252, 279, 606
GsaI	CCCAGC	1 cut(s)	500
HaeIII	GGCC	5 cut(s)	111, 359, 504, 727, 816
HhaI	GCGC	2 cut(s)	135, 697
Hin1II	CATG	1 cut(s)	701
Hin6I	GCGC	2 cut(s)	133, 695
HinP1I	GCGC	2 cut(s)	133, 695
HincII	GTYRAC	3 cut(s)	49, 211, 333
HindII	GTYRAC	3 cut(s)	49, 211, 333
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	2 cut(s)	370, 561
HpaI	GTTAAC	1 cut(s)	211
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	3 cut(s)	49, 211, 333
Hpy188I	TCNGA	2 cut(s)	310, 375
Hpy188III	TCNNGA	4 cut(s)	419, 488, 772, 821
Hpy8I	GTNNAC	3 cut(s)	49, 211, 333
HpyAV	CCTTC	3 cut(s)	625, 769, 827
HpyCH4III	ACNGT	2 cut(s)	83, 337
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	5 cut(s)	293, 443, 656, 677, 830
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 248, 518, 598, 611, 620, 653, 674
HpyF3I	CTNAG	5 cut(s)	354, 420, 432, 588, 822
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	701
HspAI	GCGC	2 cut(s)	133, 695
KflI	GGGWCCC	1 cut(s)	547
KspAI	GTTAAC	1 cut(s)	211
Kzo9I	GATC	5 cut(s)	66, 256, 466, 855, 859
LmnI	GCTCC	2 cut(s)	96, 239
Lsp1109I	GCAGC	3 cut(s)	142, 265, 592
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	2 cut(s)	63, 865
MaeII	ACGT	1 cut(s)	177
MalI	GATC	5 cut(s)	68, 258, 468, 857, 861
MboI	GATC	5 cut(s)	66, 256, 466, 855, 859
MboII	GAAGA	4 cut(s)	142, 145, 566, 627
MhlI	GDGCHC	2 cut(s)	26, 729
MluCI	AATT	4 cut(s)	315, 405, 720, 832
MroXI	GAANNNNTTC	2 cut(s)	149, 369
MseI	TTAA	5 cut(s)	18, 210, 642, 737, 852
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	2 cut(s)	254, 353
MspCI	CTTAAG	1 cut(s)	17
MspR9I	CCNGG	3 cut(s)	76, 108, 230
MvaI	CCWGG	3 cut(s)	76, 108, 230
MwoI	GCNNNNNNNGC	8 cut(s)	11, 248, 518, 598, 611, 620, 653, 674
NdeII	GATC	5 cut(s)	66, 256, 466, 855, 859
NlaIII	CATG	1 cut(s)	701
NlaIV	GGNNCC	3 cut(s)	548, 549, 727
NspI	RCATGY	1 cut(s)	701
PaeI	GCATGC	1 cut(s)	701
PasI	CCCWGGG	1 cut(s)	229
PceI	AGGCCT	1 cut(s)	111
PdmI	GAANNNNTTC	2 cut(s)	149, 369
PfeI	GAWTC	2 cut(s)	370, 561
PflFI	GACNNNGTC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	691
PkrI	GCNGC	4 cut(s)	132, 253, 280, 607
PpuMI	RGGWCCY	2 cut(s)	451, 547
Psp5II	RGGWCCY	2 cut(s)	451, 547
Psp6I	CCWGG	3 cut(s)	74, 106, 228
PspFI	CCCAGC	1 cut(s)	496
PspGI	CCWGG	3 cut(s)	74, 106, 228
PspN4I	GGNNCC	3 cut(s)	548, 549, 727
PspOMI	GGGCCC	1 cut(s)	725
PspPI	GGNCC	4 cut(s)	451, 547, 725, 726
PspPPI	RGGWCCY	2 cut(s)	451, 547
PsyI	GACNNNGTC	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	5 cut(s)	18, 210, 642, 737, 852
SatI	GCNGC	4 cut(s)	131, 252, 279, 606
Sau3AI	GATC	5 cut(s)	66, 256, 466, 855, 859
Sau96I	GGNCC	4 cut(s)	451, 547, 725, 726
ScrFI	CCNGG	3 cut(s)	76, 108, 230
SduI	GDGCHC	2 cut(s)	26, 729
SfaNI	GCATC	1 cut(s)	402
SinI	GGWCC	2 cut(s)	451, 547
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	17, 524
SmoI	CTYRAG	2 cut(s)	17, 524
SphI	GCATGC	1 cut(s)	701
Sse9I	AATT	4 cut(s)	315, 405, 720, 832
SseBI	AGGCCT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	2 cut(s)	63, 865
StuI	AGGCCT	1 cut(s)	111
StyD4I	CCNGG	3 cut(s)	74, 106, 228
TaaI	ACNGT	2 cut(s)	83, 337
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	447, 858
TasI	AATT	4 cut(s)	315, 405, 720, 832
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	2 cut(s)	370, 561
Tru1I	TTAA	5 cut(s)	18, 210, 642, 737, 852
Tru9I	TTAA	5 cut(s)	18, 210, 642, 737, 852
TscAI	CASTG	3 cut(s)	88, 166, 751
TseI	GCWGC	3 cut(s)	130, 278, 605
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	3 cut(s)	88, 166, 751
Tth111I	GACNNNGTC	1 cut(s)	194
Van91I	CCANNNNNTGG	1 cut(s)	691
Vha464I	CTTAAG	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	451, 547
XagI	CCTNNNNNAGG	2 cut(s)	431, 821
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	1 cut(s)	701
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
XmnI	GAANNNNTTC	2 cut(s)	149, 369
XspI	CTAG	2 cut(s)	63, 865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.