Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001872

Physical Location & Seq

Genomic Coordinates Forward (+)

48774890 .. 48775362

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0311900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAGTGATAATACGGAAAGCTCCCGCCGTGCTCTGTGGGCTGTTCTTGAACGGCGCTTCTTTTCCATCCCTTCTTTCAAGATTTACGGCGCCGTTGCTGGCCTCTACGACTATGGCTCGCCCGGCTGCAAACTCAAGAAGAATGTCCTTTCACTTTGGCATCAGCACTTTGTTCATGAAGAGAACATGTGGGAGATTGACTGCCCTTGCCTCACGCCAGAGGCTGTTTTGAAGGCATCTGGCCATGTAGATAAGTTCACTGATCTCATGGTTAAGGATGAGAAGAAAGGGACTTGCTACCGGGCTGATCACTTGCTCAAGGATTTCTGCAATAAGAAGCTTGAAGAGGACCGTCACATTAGTTCAGAGATGGAATGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003979 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006022 GO:0006023 GO:0006024 GO:0006065 GO:0006082 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009225 GO:0009226 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019752 GO:0030203 GO:0034641 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046398 GO:0046483 GO:0055086 GO:0055114 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

127

Amino Acids

14.77

Weight (kDa)

6.29

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26570
fragaria_vesca	FvH4_4g30330 FvH4_4g30330 FvH4_4g30330 FvH4_4g30330 FvH4_5g14230 FvH4_5g14230 FvH4_5g14230 FvH4_5g14230
malus_domestica	MD06G1200200.v1.1 MD13G1064400.v1.1 MD14G1209700.v1.1 MD16G1062900.v1.1
prunus_persica	Prupe.1G284300_v2.0.a1 Prupe.5G202800_v2.0.a1
pyrus_communis	pycom06g17680 pycom13g05690 pycom14g17320 pycom16g05500
rosa_chinensis	RchiOBHm_Chr4g0438621 RchiOBHm_Chr7g0182711
rosa_laevigata	RLG00000005108 RLG00000006346
rosa_multiflora	Rmu_co8409269.1_g000001 Rmu_sc0000014.1_g000040 Rmu_sc0006646.1_g000010
rosa_roxburghii	Rroxscaffold_3G00271060 Rroxscaffold_5G00379610
rosa_rugosa	Rorug04G0311900 Rorug06G0449100 Rorug06G0449100 Rorug06G0449200 Rorug06G0449300 Rorug06G0449300 Rorug06G0449400
rosa_samantha	Rh4AG362300 Rh4BG373700 Rh4CG387600 Rh4DG368400 Rh7AG053100 Rh7BG052700 Rh7CG054200 Rh7DG052500
rosa_wichuraiana	Rw0G006700 Rw0G016650 Rw7G004320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	241
AcyI	GRCGYC	1 cut(s)	90
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	4 cut(s)	50, 79, 232, 344
AluBI	AGCT	3 cut(s)	21, 340, 381
AluI	AGCT	3 cut(s)	21, 340, 381
Alw21I	GWGCWC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	100, 241
ApeKI	GCWGC	1 cut(s)	126
AspLEI	GCGC	2 cut(s)	57, 92
AspS9I	GGNCC	1 cut(s)	349
AsuC2I	CCSGG	2 cut(s)	123, 302
AvaII	GGWCC	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	243
BanI	GGYRCC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	2 cut(s)	74, 364
BceAI	ACGGC	4 cut(s)	12, 68, 77, 103
BclI	TGATCA	1 cut(s)	307
BcnI	CCSGG	2 cut(s)	123, 302
BfoI	RGCGCY	2 cut(s)	58, 93
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	123, 302
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	2 cut(s)	123, 302
BmsI	GCATC	2 cut(s)	169, 245
BpuEI	CTTGAG	2 cut(s)	119, 302
BpuMI	CCSGG	2 cut(s)	123, 302
BsaHI	GRCGYC	1 cut(s)	90
BseGI	GGATG	2 cut(s)	66, 283
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	2 cut(s)	102, 243
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	2 cut(s)	123, 301
BslFI	GGGAC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	102, 243
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	262, 307
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	102, 243
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	89
BssMI	GATC	2 cut(s)	262, 307
BssNI	GRCGYC	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	2 cut(s)	174, 339
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	100, 119
BstF5I	GGATG	2 cut(s)	66, 283
BstH2I	RGCGCY	2 cut(s)	58, 93
BstHHI	GCGC	2 cut(s)	57, 92
BstKTI	GATC	2 cut(s)	265, 310
BstMBI	GATC	2 cut(s)	262, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 123
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	2 cut(s)	121, 300
BstV1I	GCAGC	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	102, 243
BtsCI	GGATG	2 cut(s)	66, 283
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	100, 119
CaiI	CAGNNNCTG	1 cut(s)	224
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	2 cut(s)	57, 92
Cfr13I	GGNCC	1 cut(s)	349
CviAII	CATG	4 cut(s)	176, 187, 245, 268
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	2 cut(s)	264, 309
DpnII	GATC	2 cut(s)	262, 307
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	174, 339
EarI	CTCTTC	2 cut(s)	174, 339
Eco47I	GGWCC	1 cut(s)	349
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
FaeI	CATG	4 cut(s)	179, 190, 248, 271
FaiI	YATR	5 cut(s)	114, 177, 188, 246, 269
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	4 cut(s)	175, 186, 244, 267
FauI	CCCGC	1 cut(s)	32
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	127
FokI	GGATG	2 cut(s)	53, 290
Fsp4HI	GCNGC	1 cut(s)	127
GlaI	GCGC	2 cut(s)	56, 91
GluI	GCNGC	1 cut(s)	127
HaeII	RGCGCY	2 cut(s)	58, 93
HaeIII	GGCC	2 cut(s)	102, 243
HapII	CCGG	2 cut(s)	123, 301
HhaI	GCGC	2 cut(s)	57, 92
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	4 cut(s)	179, 190, 248, 271
Hin6I	GCGC	2 cut(s)	55, 90
HinP1I	GCGC	2 cut(s)	55, 90
HindIII	AAGCTT	1 cut(s)	338
HpaII	CCGG	2 cut(s)	123, 301
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	4 cut(s)	47, 79, 136, 176
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	2 cut(s)	81, 226
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	2 cut(s)	129, 330
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 123
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	179, 190, 248, 271
HspAI	GCGC	2 cut(s)	55, 90
KasI	GGCGCC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	262, 307
LmnI	GCTCC	2 cut(s)	26, 378
LpnPI	CCDG	5 cut(s)	84, 136, 225, 231, 314
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	2 cut(s)	169, 245
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	2 cut(s)	264, 309
MboI	GATC	2 cut(s)	262, 307
MboII	GAAGA	4 cut(s)	151, 191, 295, 356
MhlI	GDGCHC	1 cut(s)	34
MlsI	TGGCCA	1 cut(s)	243
MluNI	TGGCCA	1 cut(s)	243
Mly113I	GGCGCC	1 cut(s)	90
MnlI	CCTC	4 cut(s)	113, 214, 221, 340
Mox20I	TGGCCA	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	243
MspI	CCGG	2 cut(s)	123, 301
MspR9I	CCNGG	2 cut(s)	123, 302
MwoI	GCNNNNNNNGC	2 cut(s)	38, 123
NarI	GGCGCC	1 cut(s)	90
NciI	CCSGG	2 cut(s)	123, 302
NdeII	GATC	2 cut(s)	262, 307
NlaIII	CATG	4 cut(s)	179, 190, 248, 271
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	353
NspI	RCATGY	1 cut(s)	190
PagI	TCATGA	1 cut(s)	175
PciI	ACATGT	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	128
PluTI	GGCGCC	1 cut(s)	93
PscI	ACATGT	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	262, 307
Sau96I	GGNCC	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	123, 302
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	3 cut(s)	23, 342, 383
SfaNI	GCATC	2 cut(s)	169, 245
SfoI	GGCGCC	1 cut(s)	91
SinI	GGWCC	1 cut(s)	349
SmlI	CTYRAG	2 cut(s)	134, 317
SmoI	CTYRAG	2 cut(s)	134, 317
SsiI	CCGC	1 cut(s)	25
SspDI	GGCGCC	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	121, 300
TaaI	ACNGT	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	1 cut(s)	126
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	164, 192
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	349
XceI	RCATGY	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.