Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8409269.1

Orthogroup ID

OG0001872

Physical Location & Seq

Genomic Coordinates Reverse (-)

216 .. 1328

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8409269.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

aggatgatagcagatgtgtccaagtccaacaagattgtggtggagaagtcgacggttccagtgaagactgcggaagcaattgagaagattttgactcataacagcaaggggatcgagtaccagattctgtccaacccggagtttcttgccgaggggacagcaattgaggatctattcaaacccgaccgagttctgataggagggagggaaaccgctggaggacagaaggcagtccaggcattgaaagaagtatatgctaattgggtacctgaggacagaatcatcacaaccaatctgtggtcagctgagctttcgaagctcgctgccaatgccttcttggcgcagaggatctcctctgttaatgctatgtcagcactgtgtgaggctactggagcagatgtctcacaggttgctcatgccgtggggaaagactccagaattggacccaagtttcttaatgctagtgttggttttggagggtcttgtttccagaaggacattctcaacttggtgtatatctgtgagtgcaatggactacctgaagtagcaaactactggaaacaagtgatcaaggtgaatgactaccagaagaatcgatttgttaaccgagttgtgtcttccatgttcaacacagtttcaggcaagaagattgccattcttgggtttgcattcaagaaggacacaggtgacacaagggagacacctgccattgatgtttgcaagggtctgctgggagataaggcacagttgagcatatatgacctgcaggtaactgaggagcagatccagagggatctgtcgatgaacaaatttgattgggaccatccgattcatctgcagccagctagctcgattgaaatgaagcaagtcagtgttgtgtgtgatgcttatgaggcaaccaaaggagctcatgggatctgcattcttactgagtgggatgagttcaagactctcgattacaagaagatttacgacaacatgcagaagcctgcgtttgtgtttgatggaaggaatgttgttaatgtcggagagctgaggaagattggattcattgtctactcaattggaaagcctttggactcatggctcaaggacatgcctgcagtggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100

Pfam Domains

Protein Families

UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

370

Amino Acids

40.94

Weight (kDa)

6.61

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26570
fragaria_vesca	FvH4_4g30330 FvH4_4g30330 FvH4_4g30330 FvH4_4g30330 FvH4_5g14230 FvH4_5g14230 FvH4_5g14230 FvH4_5g14230
malus_domestica	MD06G1200200.v1.1 MD13G1064400.v1.1 MD14G1209700.v1.1 MD16G1062900.v1.1
prunus_persica	Prupe.1G284300_v2.0.a1 Prupe.5G202800_v2.0.a1
pyrus_communis	pycom06g17680 pycom13g05690 pycom14g17320 pycom16g05500
rosa_chinensis	RchiOBHm_Chr4g0438621 RchiOBHm_Chr7g0182711
rosa_laevigata	RLG00000005108 RLG00000006346
rosa_multiflora	Rmu_co8409269.1_g000001 Rmu_sc0000014.1_g000040 Rmu_sc0006646.1_g000010
rosa_roxburghii	Rroxscaffold_3G00271060 Rroxscaffold_5G00379610
rosa_rugosa	Rorug04G0311900 Rorug06G0449100 Rorug06G0449100 Rorug06G0449200 Rorug06G0449300 Rorug06G0449300 Rorug06G0449400
rosa_samantha	Rh4AG362300 Rh4BG373700 Rh4CG387600 Rh4DG368400 Rh7AG053100 Rh7BG052700 Rh7CG054200 Rh7DG052500
rosa_wichuraiana	Rw0G006700 Rw0G016650 Rw7G004320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	712
Acc36I	ACCTGC	3 cut(s)	712, 757, 771
Acc65I	GGTACC	1 cut(s)	265
AccB1I	GGYRCC	1 cut(s)	265
AccB7I	CCANNNNNTGG	1 cut(s)	297
AccI	GTMKAC	2 cut(s)	50, 1056
AciI	CCGC	2 cut(s)	71, 213
AclWI	GGATC	6 cut(s)	119, 177, 356, 778, 801, 923
AcsI	RAATTY	1 cut(s)	809
AcuI	CTGAAG	1 cut(s)	561
AdeI	CACNNNGTG	1 cut(s)	380
AfaI	GTAC	2 cut(s)	119, 267
AfiI	CCNNNNNNNGG	2 cut(s)	297, 660
AgsI	TTSAA	6 cut(s)	178, 244, 628, 673, 857, 946
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	7 cut(s)	305, 310, 319, 845, 849, 908, 1033
AluI	AGCT	7 cut(s)	305, 310, 319, 845, 849, 908, 1033
Alw21I	GWGCWC	1 cut(s)	910
Alw26I	GTCTC	2 cut(s)	406, 692
AlwI	GGATC	6 cut(s)	119, 177, 356, 778, 801, 923
AlwNI	CAGNNNCTG	1 cut(s)	127
ApeKI	GCWGC	2 cut(s)	323, 838
ApoI	RAATTY	1 cut(s)	809
Asp718I	GGTACC	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	443, 820
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	586, 698
AsuII	TTCGAA	1 cut(s)	314
AsuNHI	GCTAGC	1 cut(s)	845
AvaII	GGWCC	2 cut(s)	443, 820
AxyI	CCTNAGG	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	910
BbsI	GAAGAC	2 cut(s)	71, 609
Bbv12I	GWGCWC	1 cut(s)	910
BbvCI	CCTCAGC	1 cut(s)	1034
BbvI	GCAGC	2 cut(s)	310, 850
BccI	CCATC	2 cut(s)	831, 998
BceAI	ACGGC	1 cut(s)	404
BcgI	CGANNNNNNTGC	4 cut(s)	94, 128, 817, 851
BciT130I	CCWGG	1 cut(s)	236
BclI	TGATCA	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	406, 692
BfaI	CTAG	2 cut(s)	462, 846
BfmI	CTRYAG	3 cut(s)	764, 836, 1101
BfuAI	ACCTGC	3 cut(s)	712, 757, 771
BglI	GCCNNNNNGGC	1 cut(s)	338
BisI	GCNGC	2 cut(s)	324, 839
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	2 cut(s)	325, 840
Bme1390I	CCNGG	2 cut(s)	137, 236
Bme18I	GGWCC	2 cut(s)	443, 820
BmgT120I	GGNCC	2 cut(s)	443, 820
BmiI	GGNNCC	4 cut(s)	57, 267, 445, 821
BmrFI	CCNGG	2 cut(s)	137, 236
BmsI	GCATC	1 cut(s)	874
BmtI	GCTAGC	1 cut(s)	849
BpiI	GAAGAC	2 cut(s)	71, 609
BpmI	CTGGAG	3 cut(s)	237, 411, 418
Bpu10I	CCTNAGC	1 cut(s)	1034
Bpu1102I	GCTNAGC	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	1073
BpuMI	CCSGG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	595
BsaJI	CCNNGG	2 cut(s)	150, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 660
Bse1I	ACTGG	3 cut(s)	59, 394, 560
Bse21I	CCTNAGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	595
BseDI	CCNNGG	2 cut(s)	150, 420
BseGI	GGATG	3 cut(s)	9, 823, 943
BseLI	CCNNNNNNNGG	2 cut(s)	297, 660
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	5 cut(s)	261, 297, 765, 921, 1025
BseNI	ACTGG	3 cut(s)	59, 394, 560
BseRI	GAGGAG	2 cut(s)	343, 791
BseXI	GCAGC	2 cut(s)	310, 850
BseYI	CCCAGC	1 cut(s)	730
Bsh1285I	CGRYCG	1 cut(s)	187
BshNI	GGYRCC	1 cut(s)	265
BshVI	ATCGAT	1 cut(s)	595
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	910
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	2 cut(s)	169, 833
BslI	CCNNNNNNNGG	2 cut(s)	297, 660
BsmAI	GTCTC	2 cut(s)	406, 692
BsmFI	GGGAC	2 cut(s)	169, 833
BsmI	GAATGC	2 cut(s)	668, 921
Bsp119I	TTCGAA	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	910
Bsp143I	GATC	7 cut(s)	111, 169, 348, 567, 783, 793, 915
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	2 cut(s)	71, 213
BspCNI	CTCAG	5 cut(s)	262, 298, 766, 922, 1026
BspDI	ATCGAT	1 cut(s)	595
BspLI	GGNNCC	4 cut(s)	57, 267, 445, 821
BspMAI	CTGCAG	3 cut(s)	768, 840, 1105
BspMI	ACCTGC	3 cut(s)	712, 757, 771
BspOI	GCTAGC	1 cut(s)	849
BspPI	GGATC	6 cut(s)	119, 177, 356, 778, 801, 923
BspT104I	TTCGAA	1 cut(s)	314
BspT107I	GGYRCC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	535
BsrI	ACTGG	3 cut(s)	59, 394, 560
BssECI	CCNNGG	2 cut(s)	150, 420
BssMI	GATC	7 cut(s)	111, 169, 348, 567, 783, 793, 915
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	4 cut(s)	55, 378, 634, 747
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	5 cut(s)	321, 843, 847, 990, 1101
BstDEI	CTNAG	5 cut(s)	270, 306, 774, 930, 1034
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	3 cut(s)	9, 823, 943
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	7 cut(s)	114, 172, 351, 570, 786, 796, 918
BstMAI	GTCTC	2 cut(s)	406, 692
BstMBI	GATC	7 cut(s)	111, 169, 348, 567, 783, 793, 915
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	7 cut(s)	236, 316, 329, 338, 371, 392, 893
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	2 cut(s)	982, 1099
BstSCI	CCNGG	2 cut(s)	135, 234
BstSFI	CTRYAG	3 cut(s)	764, 836, 1101
BstV1I	GCAGC	2 cut(s)	310, 850
BstV2I	GAAGAC	2 cut(s)	71, 609
BstX2I	RGATCY	5 cut(s)	169, 348, 783, 793, 915
BstYI	RGATCY	5 cut(s)	169, 348, 783, 793, 915
Bsu15I	ATCGAT	1 cut(s)	595
Bsu36I	CCTNAGG	1 cut(s)	270
BsuTUI	ATCGAT	1 cut(s)	595
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	3 cut(s)	9, 823, 943
BtsI	GCAGTG	1 cut(s)	1110
BtsIMutI	CAGTG	4 cut(s)	66, 374, 877, 1110
BveI	ACCTGC	3 cut(s)	712, 757, 771
Cac8I	GCNNGC	5 cut(s)	321, 843, 847, 990, 1101
CaiI	CAGNNNCTG	1 cut(s)	127
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	2 cut(s)	443, 820
ClaI	ATCGAT	1 cut(s)	595
Csp6I	GTAC	2 cut(s)	118, 266
CviAII	CATG	6 cut(s)	416, 622, 911, 979, 1083, 1096
CviQI	GTAC	2 cut(s)	118, 266
DdeI	CTNAG	5 cut(s)	270, 306, 774, 930, 1034
DpnI	GATC	7 cut(s)	113, 171, 350, 569, 785, 795, 917
DpnII	GATC	7 cut(s)	111, 169, 348, 567, 783, 793, 915
DraIII	CACNNNGTG	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	908
Eco24I	GRGCYC	1 cut(s)	910
Eco47I	GGWCC	2 cut(s)	443, 820
Eco53kI	GAGCTC	1 cut(s)	908
Eco57I	CTGAAG	1 cut(s)	561
Eco81I	CCTNAGG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	908
EcoRII	CCWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	910
FaeI	CATG	6 cut(s)	419, 625, 914, 982, 1086, 1099
FaqI	GGGAC	2 cut(s)	169, 833
FatI	CATG	6 cut(s)	415, 621, 910, 978, 1082, 1095
FbaI	TGATCA	1 cut(s)	567
FblI	GTMKAC	2 cut(s)	50, 1056
Fnu4HI	GCNGC	2 cut(s)	324, 839
FokI	GGATG	3 cut(s)	16, 810, 950
FriOI	GRGCYC	1 cut(s)	910
Fsp4HI	GCNGC	2 cut(s)	324, 839
FspBI	CTAG	2 cut(s)	462, 846
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	324, 839
GsaI	CCCAGC	1 cut(s)	734
GsuI	CTGGAG	3 cut(s)	237, 411, 418
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	6 cut(s)	419, 625, 914, 982, 1086, 1099
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HincII	GTYRAC	2 cut(s)	51, 604
HindII	GTYRAC	2 cut(s)	51, 604
HinfI	GANTC	9 cut(s)	94, 124, 279, 431, 592, 829, 949, 1047, 1079
HpaI	GTTAAC	1 cut(s)	604
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	2 cut(s)	586, 698
Hpy166II	GTNNAC	3 cut(s)	51, 604, 1057
Hpy188I	TCNGA	3 cut(s)	195, 828, 1028
Hpy188III	TCNNGA	6 cut(s)	435, 490, 673, 787, 946, 953
Hpy8I	GTNNAC	3 cut(s)	51, 604, 1057
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	5 cut(s)	220, 343, 487, 670, 1002
HpyCH4III	ACNGT	4 cut(s)	55, 378, 634, 747
HpyCH4V	TGCA	8 cut(s)	528, 668, 720, 766, 838, 921, 982, 1103
HpyF10VI	GCNNNNNNNGC	7 cut(s)	236, 316, 329, 338, 371, 392, 893
HpyF3I	CTNAG	5 cut(s)	270, 306, 774, 930, 1034
Hsp92II	CATG	6 cut(s)	419, 625, 914, 982, 1086, 1099
HspAI	GCGC	1 cut(s)	341
KpnI	GGTACC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	567
KspAI	GTTAAC	1 cut(s)	604
Kzo9I	GATC	7 cut(s)	111, 169, 348, 567, 783, 793, 915
LmnI	GCTCC	3 cut(s)	392, 778, 905
Lsp1109I	GCAGC	2 cut(s)	310, 850
LweI	GCATC	1 cut(s)	874
MaeI	CTAG	2 cut(s)	462, 846
MaeIII	GTNAC	2 cut(s)	686, 769
MalI	GATC	7 cut(s)	113, 171, 350, 569, 785, 795, 917
MboI	GATC	7 cut(s)	111, 169, 348, 567, 783, 793, 915
MboII	GAAGA	7 cut(s)	76, 97, 601, 609, 658, 976, 1051
MfeI	CAATTG	3 cut(s)	78, 162, 1062
MflI	RGATCY	5 cut(s)	169, 348, 783, 793, 915
MhlI	GDGCHC	1 cut(s)	910
MluCI	AATT	6 cut(s)	78, 162, 259, 438, 809, 1062
MlyI	GAGTC	4 cut(s)	88, 425, 943, 1073
MmeI	TCCRAC	3 cut(s)	51, 156, 1006
MseI	TTAA	5 cut(s)	360, 456, 603, 1020, 1111
MspA1I	CMGCKG	2 cut(s)	215, 305
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	137, 236
MunI	CAATTG	3 cut(s)	78, 162, 1062
Mva1269I	GAATGC	2 cut(s)	668, 921
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	7 cut(s)	236, 316, 329, 338, 371, 392, 893
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	7 cut(s)	111, 169, 348, 567, 783, 793, 915
NheI	GCTAGC	1 cut(s)	845
NlaIII	CATG	6 cut(s)	419, 625, 914, 982, 1086, 1099
NlaIV	GGNNCC	4 cut(s)	57, 267, 445, 821
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	686
NspI	RCATGY	2 cut(s)	982, 1099
NspV	TTCGAA	1 cut(s)	314
PaqCI	CACCTGC	1 cut(s)	712
PctI	GAATGC	2 cut(s)	668, 921
PfeI	GAWTC	5 cut(s)	124, 279, 592, 829, 1047
PflMI	CCANNNNNTGG	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	325, 840
PleI	GAGTC	4 cut(s)	88, 425, 943, 1073
PpsI	GAGTC	4 cut(s)	88, 425, 943, 1073
Psp124BI	GAGCTC	1 cut(s)	910
Psp6I	CCWGG	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	4 cut(s)	57, 267, 445, 821
PspPI	GGNCC	2 cut(s)	443, 820
PstI	CTGCAG	3 cut(s)	768, 840, 1105
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	5 cut(s)	169, 348, 783, 793, 915
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	2 cut(s)	119, 267
RsaNI	GTAC	2 cut(s)	118, 266
SacI	GAGCTC	1 cut(s)	910
SalI	GTCGAC	1 cut(s)	49
SaqAI	TTAA	5 cut(s)	360, 456, 603, 1020, 1111
SatI	GCNGC	2 cut(s)	324, 839
Sau3AI	GATC	7 cut(s)	111, 169, 348, 567, 783, 793, 915
Sau96I	GGNCC	2 cut(s)	443, 820
SbfI	CCTGCAGG	1 cut(s)	768
SchI	GAGTC	4 cut(s)	88, 425, 943, 1073
ScrFI	CCNGG	2 cut(s)	137, 236
SdaI	CCTGCAGG	1 cut(s)	768
SduI	GDGCHC	1 cut(s)	910
SfaNI	GCATC	1 cut(s)	874
SfcI	CTRYAG	3 cut(s)	764, 836, 1101
SfuI	TTCGAA	1 cut(s)	314
SinI	GGWCC	2 cut(s)	443, 820
SmlI	CTYRAG	1 cut(s)	1088
SmoI	CTYRAG	1 cut(s)	1088
Sse8387I	CCTGCAGG	1 cut(s)	768
Sse9I	AATT	6 cut(s)	78, 162, 259, 438, 809, 1062
SsiI	CCGC	2 cut(s)	71, 213
SspMI	CTAG	2 cut(s)	462, 846
SstI	GAGCTC	1 cut(s)	910
StyD4I	CCNGG	2 cut(s)	135, 234
TaaI	ACNGT	4 cut(s)	55, 378, 634, 747
TaqI	TCGA	7 cut(s)	50, 114, 314, 595, 800, 851, 954
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	6 cut(s)	78, 162, 259, 438, 809, 1062
TfiI	GAWTC	5 cut(s)	124, 279, 592, 829, 1047
Tru1I	TTAA	5 cut(s)	360, 456, 603, 1020, 1111
Tru9I	TTAA	5 cut(s)	360, 456, 603, 1020, 1111
TscAI	CASTG	4 cut(s)	66, 381, 877, 1110
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	2 cut(s)	323, 838
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	4 cut(s)	818, 821, 875, 1039
TspRI	CASTG	4 cut(s)	66, 381, 877, 1110
Van91I	CCANNNNNTGG	1 cut(s)	297
VpaK11BI	GGWCC	2 cut(s)	443, 820
XapI	RAATTY	1 cut(s)	809
XceI	RCATGY	2 cut(s)	982, 1099
XcmI	CCANNNNNNNNNTGG	2 cut(s)	34, 334
XmiI	GTMKAC	2 cut(s)	50, 1056
XspI	CTAG	2 cut(s)	462, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.