Rorug06G0449100

Pre-mRNA-splicing factor ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
57910450 .. 57914459
4010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0449100.1

Sequence Viewer

Length: 975 bp
ATGGATAAACTAACTGCTGCAGAAGCTGCTAGTCCTTCTTTGAGTTTATTTGCTGCATTGTCATATGGGGCTGCTTCCATGGCTATGGTTTTCATCAATAAAGCTGTTCTTATGGAGTACTCCCATTCAATGACACTTCTCACTATGCAGCAATTGGCCACTGCTTTGCTTATACATTTTGGTCGAAGAATGGGATACACGAGATCCAGAGAACTAGAAATGAGCACTGCCAGGAAACTTCTCCCCGTGTCACTTTTCTATAATGCTAACGTCGCATTTGCTTTGGCCAGTCTGAAGGGAGTCAATATTCCCATGTACATTGCAATCAAAAGACTCACACCGCTTGCTGTGCTTATCGCTGGATTCTTCTCAGGAAAGGGGAAACCCTCAATACAGGTGATCCTTTCAGTGATATTGACTGCTGGAGGGGTTGTCATAGCAGCACTAGGAGACTTTTCATTTGATCTTTTTGGATATAGCTTGGCCCTCACTTCAGTTTTTTTCCAGACCATGTACCTTGTGCTAGTGGAAAAGTCTGGTGCAGAGGATGGGCTATCATCAGTTGAGATCATGTTCTATAACAGCTTTCTGTCTCTTCCATTTTTGCTATTTCTCATTATAGCTACCGGAGAATTTCCAAATTCTTTCTCATTACTACTTGTAAAGAGCAAATCCATACATTTTTTGGTGATCCTTATTCTTTCATTTGTTATGGGCATTGCTCTCAACTTCACCATGTTCTTATGTACCATAGTCAACTCTGCTCTGACAACGACCATAGTTGGAGTCCTAAAAGGGGTTGGGTCCACGACCCTTGGTTTTGTCTTGCTGGGTGGTGTGCAAGTACATGGTTTAAATGTGACTGGACTAGTTATCAACACAGCTGGTGGAGTTTGGTATTCATATGCCAAATATCAGCAAAGGAAGAGCAAGGCCCCAAAACGGGTACTACAGAAAGCAAGTGCTCGGGTTTGA

Protein Analysis

324

Amino Acids

34.9

Weight (kDa)

9.84

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 24 - 301 1.5e-15 Triose-phosphate Transporter family
UAA PF08449 33 - 266 2.5e-09 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 341
AclWI GGATC 3 cut(s) 198, 394, 685
AcoI YGGCCR 2 cut(s) 156, 285
AcsI RAATTY 2 cut(s) 632, 640
AcuI CTGAAG 2 cut(s) 314, 477
AfaI GTAC 6 cut(s) 119, 317, 515, 748, 846, 948
AfiI CCNNNNNNNGG 3 cut(s) 796, 942, 943
AgsI TTSAA 1 cut(s) 129
AhlI ACTAGT 1 cut(s) 868
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 6 cut(s) 26, 104, 480, 585, 623, 884
AluI AGCT 6 cut(s) 26, 104, 480, 585, 623, 884
Alw21I GWGCWC 2 cut(s) 227, 967
Alw26I GTCTC 2 cut(s) 444, 597
AlwI GGATC 3 cut(s) 198, 394, 685
AlwNI CAGNNNCTG 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 966
AoxI GGCC 4 cut(s) 156, 285, 483, 933
ApeKI GCWGC 6 cut(s) 17, 26, 53, 71, 148, 440
ApoI RAATTY 2 cut(s) 632, 640
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
AspS9I GGNCC 3 cut(s) 484, 804, 934
AsuHPI GGTGA 3 cut(s) 409, 700, 724
AvaI CYCGRG 1 cut(s) 966
AvaII GGWCC 1 cut(s) 804
BalI TGGCCA 2 cut(s) 158, 287
BauI CACGAG 1 cut(s) 199
Bbv12I GWGCWC 2 cut(s) 227, 967
BbvI GCAGC 6 cut(s) 4, 13, 40, 58, 160, 452
BccI CCATC 1 cut(s) 542
BciT130I CCWGG 1 cut(s) 232
BciVI GTATCC 1 cut(s) 188
BcoDI GTCTC 2 cut(s) 444, 597
BcuI ACTAGT 1 cut(s) 868
BfaI CTAG 5 cut(s) 30, 215, 446, 524, 869
BfmI CTRYAG 2 cut(s) 18, 950
BfuI GTATCC 1 cut(s) 188
BisI GCNGC 6 cut(s) 18, 27, 54, 72, 149, 441
BlsI GCNGC 6 cut(s) 19, 28, 55, 73, 150, 442
BmcAI AGTACT 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 1 cut(s) 804
BmeT110I CYCGRG 1 cut(s) 966
BmgT120I GGNCC 3 cut(s) 484, 804, 934
BmiI GGNNCC 2 cut(s) 805, 936
BmrFI CCNGG 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 78, 814
BsaWI WCCGGW 1 cut(s) 626
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 3 cut(s) 796, 942, 943
Bse1I ACTGG 2 cut(s) 288, 868
Bse3DI GCAATG 2 cut(s) 318, 717
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 78, 814
BseGI GGATG 1 cut(s) 553
BseLI CCNNNNNNNGG 3 cut(s) 796, 942, 943
BseMI GCAATG 2 cut(s) 318, 717
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 2 cut(s) 288, 868
BseXI GCAGC 6 cut(s) 4, 13, 40, 58, 160, 452
BseYI CCCAGC 1 cut(s) 829
BsgI GTGCAG 1 cut(s) 561
BshFI GGCC 4 cut(s) 158, 287, 485, 935
BsiHKAI GWGCWC 2 cut(s) 227, 967
BsiHKCI CYCGRG 1 cut(s) 966
BsiSI CCGG 1 cut(s) 627
BslI CCNNNNNNNGG 3 cut(s) 796, 942, 943
BsmAI GTCTC 2 cut(s) 444, 597
BsnI GGCC 4 cut(s) 158, 287, 485, 935
BsoBI CYCGRG 1 cut(s) 966
Bsp1286I GDGCHC 2 cut(s) 227, 967
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 5 cut(s) 203, 399, 463, 567, 690
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 1 cut(s) 341
BspANI GGCC 4 cut(s) 158, 287, 485, 935
BspCNI CTCAG 1 cut(s) 383
BspLI GGNNCC 2 cut(s) 805, 936
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 3 cut(s) 198, 394, 685
BspQI GCTCTTC 1 cut(s) 920
BsrDI GCAATG 2 cut(s) 318, 717
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 2 cut(s) 288, 868
BssECI CCNNGG 2 cut(s) 78, 814
BssMI GATC 5 cut(s) 203, 399, 463, 567, 690
BssSI CACGAG 1 cut(s) 199
BssT1I CCWWGG 2 cut(s) 78, 814
Bst2BI CACGAG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 232
Bst6I CTCTTC 2 cut(s) 600, 920
BstAPI GCANNNNNTGC 1 cut(s) 26
BstAUI TGTACA 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 370
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 553
BstKTI GATC 5 cut(s) 206, 402, 466, 570, 693
BstMAI GTCTC 2 cut(s) 444, 597
BstMBI GATC 5 cut(s) 203, 399, 463, 567, 690
BstMWI GCNNNNNNNGC 5 cut(s) 23, 26, 80, 272, 349
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 230
BstSFI CTRYAG 2 cut(s) 18, 950
BstV1I GCAGC 6 cut(s) 4, 13, 40, 58, 160, 452
BstX2I RGATCY 1 cut(s) 203
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 1 cut(s) 203
BsuI GTATCC 1 cut(s) 188
BsuRI GGCC 4 cut(s) 158, 287, 485, 935
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 1 cut(s) 553
BtsI GCAGTG 2 cut(s) 159, 225
BtsIMutI CAGTG 3 cut(s) 159, 225, 414
Cac8I GCNNGC 1 cut(s) 345
CaiI CAGNNNCTG 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 484, 804, 934
Csp6I GTAC 6 cut(s) 118, 316, 514, 747, 845, 947
CspCI CAANNNNNGTGG 2 cut(s) 796, 831
CviAII CATG 6 cut(s) 79, 313, 511, 571, 736, 848
CviQI GTAC 6 cut(s) 118, 316, 514, 747, 845, 947
DdeI CTNAG 1 cut(s) 370
DpnI GATC 5 cut(s) 205, 401, 465, 569, 692
DpnII GATC 5 cut(s) 203, 399, 463, 567, 690
DraI TTTAAA 1 cut(s) 855
EaeI YGGCCR 2 cut(s) 156, 285
Eam1104I CTCTTC 2 cut(s) 600, 920
EarI CTCTTC 2 cut(s) 600, 920
Eco130I CCWWGG 2 cut(s) 78, 814
Eco47I GGWCC 1 cut(s) 804
Eco57I CTGAAG 2 cut(s) 314, 477
Eco88I CYCGRG 1 cut(s) 966
EcoO109I RGGNCCY 1 cut(s) 934
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 2 cut(s) 78, 814
ErhI CCWWGG 2 cut(s) 78, 814
FaeI CATG 6 cut(s) 82, 316, 514, 574, 739, 851
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FatI CATG 6 cut(s) 78, 312, 510, 570, 735, 847
FauNDI CATATG 2 cut(s) 64, 904
Fnu4HI GCNGC 6 cut(s) 18, 27, 54, 72, 149, 441
FokI GGATG 1 cut(s) 560
Fsp4HI GCNGC 6 cut(s) 18, 27, 54, 72, 149, 441
FspBI CTAG 5 cut(s) 30, 215, 446, 524, 869
GluI GCNGC 6 cut(s) 18, 27, 54, 72, 149, 441
GsaI CCCAGC 1 cut(s) 833
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 4 cut(s) 158, 287, 485, 935
HapII CCGG 1 cut(s) 627
Hin1II CATG 6 cut(s) 82, 316, 514, 574, 739, 851
HincII GTYRAC 1 cut(s) 757
HindII GTYRAC 1 cut(s) 757
HinfI GANTC 4 cut(s) 300, 333, 363, 786
HpaII CCGG 1 cut(s) 627
HphI GGTGA 3 cut(s) 409, 700, 724
Hpy166II GTNNAC 2 cut(s) 757, 807
Hpy188I TCNGA 2 cut(s) 294, 768
Hpy188III TCNNGA 3 cut(s) 207, 372, 505
Hpy8I GTNNAC 2 cut(s) 757, 807
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 45, 289
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 6 cut(s) 20, 56, 148, 323, 542, 841
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 26, 80, 272, 349
HpyF3I CTNAG 1 cut(s) 370
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 6 cut(s) 82, 316, 514, 574, 739, 851
Kzo9I GATC 5 cut(s) 203, 399, 463, 567, 690
LguI GCTCTTC 1 cut(s) 920
Lsp1109I GCAGC 6 cut(s) 4, 13, 40, 58, 160, 452
MaeI CTAG 5 cut(s) 30, 215, 446, 524, 869
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 249, 859
MalI GATC 5 cut(s) 205, 401, 465, 569, 692
MboI GATC 5 cut(s) 203, 399, 463, 567, 690
MboII GAAGA 4 cut(s) 198, 358, 587, 937
MfeI CAATTG 1 cut(s) 152
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 2 cut(s) 227, 967
MlsI TGGCCA 2 cut(s) 158, 287
MluCI AATT 3 cut(s) 152, 632, 640
MluNI TGGCCA 2 cut(s) 158, 287
MlyI GAGTC 3 cut(s) 309, 327, 795
MmeI TCCRAC 1 cut(s) 763
MnlI CCTC 4 cut(s) 397, 419, 497, 538
Mox20I TGGCCA 2 cut(s) 158, 287
MscI TGGCCA 2 cut(s) 158, 287
MseI TTAA 1 cut(s) 854
MslI CAYNNNNRTG 1 cut(s) 83
Msp20I TGGCCA 2 cut(s) 158, 287
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 1 cut(s) 627
MspR9I CCNGG 1 cut(s) 232
MunI CAATTG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 5 cut(s) 23, 26, 80, 272, 349
NcoI CCATGG 1 cut(s) 78
NdeI CATATG 2 cut(s) 64, 904
NdeII GATC 5 cut(s) 203, 399, 463, 567, 690
NlaIII CATG 6 cut(s) 82, 316, 514, 574, 739, 851
NlaIV GGNNCC 2 cut(s) 805, 936
NmuCI GTSAC 2 cut(s) 249, 859
PciSI GCTCTTC 1 cut(s) 920
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 6 cut(s) 19, 28, 55, 73, 150, 442
PleI GAGTC 3 cut(s) 308, 327, 794
PpsI GAGTC 3 cut(s) 308, 327, 794
Psp6I CCWGG 1 cut(s) 230
PspFI CCCAGC 1 cut(s) 829
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 805, 936
PspPI GGNCC 3 cut(s) 484, 804, 934
PstI CTGCAG 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 6 cut(s) 119, 317, 515, 748, 846, 948
RsaNI GTAC 6 cut(s) 118, 316, 514, 747, 845, 947
RseI CAYNNNNRTG 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 920
SaqAI TTAA 1 cut(s) 854
SatI GCNGC 6 cut(s) 18, 27, 54, 72, 149, 441
Sau3AI GATC 5 cut(s) 203, 399, 463, 567, 690
Sau96I GGNCC 3 cut(s) 484, 804, 934
ScaI AGTACT 1 cut(s) 119
SchI GAGTC 3 cut(s) 309, 327, 795
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 2 cut(s) 227, 967
SetI ASST 9 cut(s) 28, 106, 273, 399, 482, 519, 587, 625, 886
SfcI CTRYAG 2 cut(s) 18, 950
SinI GGWCC 1 cut(s) 804
SmiMI CAYNNNNRTG 1 cut(s) 83
SpeI ACTAGT 1 cut(s) 868
Sse9I AATT 3 cut(s) 152, 632, 640
SsiI CCGC 1 cut(s) 341
SspI AATATT 1 cut(s) 307
SspMI CTAG 5 cut(s) 30, 215, 446, 524, 869
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 2 cut(s) 78, 814
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 184
TasI AATT 3 cut(s) 152, 632, 640
TatI WGTACW 3 cut(s) 117, 315, 844
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 1 cut(s) 854
Tru9I TTAA 1 cut(s) 854
TscAI CASTG 3 cut(s) 166, 232, 414
TseFI GTSAC 2 cut(s) 249, 859
TseI GCWGC 6 cut(s) 17, 26, 53, 71, 148, 440
Tsp45I GTSAC 2 cut(s) 249, 859
TspDTI ATGAA 4 cut(s) 82, 447, 693, 891
TspRI CASTG 3 cut(s) 166, 232, 414
VpaK11BI GGWCC 1 cut(s) 804
XapI RAATTY 2 cut(s) 632, 640
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
XspI CTAG 5 cut(s) 30, 215, 446, 524, 869
ZrmI AGTACT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.