RLG00000014320

Pre-mRNA-splicing factor ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
51293744 .. 51295897
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014320

Sequence Viewer

Length: 2154 bp
ATGTCATCATCTTCGTCTTCTCTGCAAGTTGGTTCGGAGCCCAGCAAGTCAGATCCCGATAAGAAAAGGCGCCGGAGTGAGGCTTGGAGTCAAGAAGACGATGAAGAGATTGTTCCCCCACACCAGAAAGATCAAGTTAAAAGTATAAGAAGTTCGGCTGATGGTGATGATGATGCAGCAGCTGCTAAAGTTGATGATGATGAACAAGTGCAGCAATTCAATTCGGAGCTATTTGAGAAGCTCCAGGAGGATAGAAAAGCACTACCCATTTACATATTTCGTGAACAATTGCTCGACTATGTTGAAGCGAATCAGGTTGTTATTATTTATGGTCCAACTGGGTGTGGAAAAACCACACAGATACCCCAATATCTACACGAGGCCGGATATAGCGAAAAAGGGAAGATTGGGTGCACACAGCCACATGGAGTTGTTGCCATGAGTGCTGCTTCCAGAGTTTCTAAAGAAGTGGGTGTCAAGCTCGGGCATGAGGTAGGGTATTCCATTCCTTCTGAGGATTGCACATCTGAAAAGACTGTTTTGAGATATATGACAGATGCAATGTTGTTGCATGAAGTCTATGGTGAACCAGATTTGATAAGCTATAGTGTGTTGGTGGTGGATGGGGCCGATGAGAGAACCCTCTCAACTGATATCCTACTTGGATTGTTAAAGGATATTCTTCGATTTAGAACCAAACTTAAGATAGTCATCTCCATCGGAACTACTGATCATGCTGATAAGTTACGTGGTTATTTCAATAAAGCTCCCATTCTCAAAATCCTACTAACAAGGCGGATGAGTTATGGTCACACCAAAATTGAATACATGAACGCACCAATAGTAGATTACTTGGATGTAGCAATAGGCACTGCACTTCAAATCCATGCGACAGAACCAACCGGGGGAGATATTTTGGTCTTACTCACCGATTATGAAGAGATCGAAACAGCAGAAGAACAATTGAAGCTAAAAGCTGCTGGCTTGGCTGAAGAGCTGATTATCTGCCCCGTACATGAAAACCTGCCTGCCGAGCTTCAAGCAAAAGTTTTTGAGCCCACACCTCAAGGAGCCAGGAAGGTTTTCCTTGCCACAGTGGCTATCAATGGGGCCAAATATGTCATTGACCCTGGGTTTTGCAAGAGGAAGTGTTATAATCCAAGAACTGGTATAGAGTTAATGCAAGTCGCTCACATCTCAAAGGCAACTGCATTACAAAGGATGGTGGTAAGTGAAAGGGGAAGTCAAACGGCCCCTGCCAAGTGCTTCTGTTTATATACTGATCGTAATTATCACAAAGATTTTGATAAAATCACAGTGCCAGAAGTACAATGGACTAACCTTGCAAATGCTGTTCTTAGGCTTCTGCATCTTGGGGTTAATTTATCACAGTTTGAGTTTATTGACCCTCCACCTGCTGAAGCATTGACAAAAGCCTTACAAGTGTTATTTATACTAGGTGCTGTAAATACTGAGGGTGAGCTTTCTAGGGTTGGTGCACAGATGGCGGAAATCCCTTTGGATCATATGCTGTCTAGGGCGGTAGTTGCTTCAATTGACTACAAATGCTCAGCTGAGGTGATTTCTATTGTTGCCATGCTTTCCACCGGTAGTGATTCAGTCTTCTATCGACCACAGGACAAACATACAGATGCCGACAATGCGCGATTGCATTTTCATTCTGGGAATGTGGGGGATCACATTGCATTGCTTAGAGTTTACAATGCATGGAAAGAGGCAAATTTCTCAACACAGTGGTGTCACGAAAACTACATACGAGCTAGAAGCATGAGGAGAGCAAGACATATTCGGGATAAGCTTGAGCAGCTCTTGGAGAAGGTCGGCATAGAGCTCACCTCAAATCTAGTTGATTTGGAGCCTATAGAGAAGGCTATTACCACCGGTTTCTTACCTCATTCTGCAAAGCAGCAAATGAATGGATCTTATAGAACAGTCAAAGAGCCAGATTCACCAACTATCCGTATACATCCCAACTCGGGGATGGCACAAGTGCTCCCGACGTGGGTTGTGTATCATGATTTGGTGCCCACAACCGGAGAATATATGAGACAAGTAACAGAGATCAAGCCGGAATGGTTGGTTGAAATAGCTCCGCATTATTACCGGCTGGAGTATGTACTGGATGTGGTTTAA

Protein Analysis

718

Amino Acids

80.19

Weight (kDa)

5.65

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_22 PF13401 104 - 243 5e-06 AAA domain
HA2_C PF21010 510 - 570 2.4e-08 Helicase associated domain (HA2), ratchet-like
OB_NTP_bind PF07717 628 - 707 5e-19 Oligonucleotide/oligosaccharide-binding (OB)-fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1155
AarI CACCTGC 1 cut(s) 1423
Acc36I ACCTGC 2 cut(s) 1032, 1423
AccB1I GGYRCC 2 cut(s) 69, 2044
AccB7I CCANNNNNTGG 1 cut(s) 1166
AccI GTMKAC 1 cut(s) 1984
AccII CGCG 1 cut(s) 1666
AciI CCGC 4 cut(s) 796, 1508, 1541, 2114
AclWI GGATC 4 cut(s) 47, 1530, 1704, 1948
AcsI RAATTY 1 cut(s) 1741
AcuI CTGAAG 2 cut(s) 1011, 1440
AcyI GRCGYC 1 cut(s) 70
AfaI GTAC 3 cut(s) 1014, 1329, 2139
AfiI CCNNNNNNNGG 7 cut(s) 79, 905, 1166, 1997, 1998, 2023, 2054
AflII CTTAAG 1 cut(s) 701
AgeI ACCGGT 2 cut(s) 1607, 1901
AgsI TTSAA 9 cut(s) 220, 305, 760, 824, 881, 967, 1040, 1554, 2105
AjiI CACGTC 1 cut(s) 2022
AjnI CCWGG 3 cut(s) 243, 1073, 1129
AleI CACNNNNGTG 1 cut(s) 1756
Alw21I GWGCWC 4 cut(s) 416, 1501, 1854, 2016
Alw26I GTCTC 1 cut(s) 2062
Alw44I GTGCAC 2 cut(s) 412, 1497
AlwI GGATC 4 cut(s) 47, 1530, 1704, 1948
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 2 cut(s) 482, 1996
AoxI GGCC 4 cut(s) 381, 627, 1110, 1251
ApaLI GTGCAC 2 cut(s) 412, 1497
ApeKI GCWGC 8 cut(s) 176, 179, 182, 211, 446, 977, 1825, 1927
ApoI RAATTY 1 cut(s) 1741
AsiGI ACCGGT 2 cut(s) 1607, 1901
Asp700I GAANNNNTTC 1 cut(s) 1082
AspLEI GCGC 2 cut(s) 72, 1666
AspS9I GGNCC 4 cut(s) 332, 627, 1110, 1252
AsuC2I CCSGG 1 cut(s) 904
AsuHPI GGTGA 7 cut(s) 176, 596, 919, 1490, 1591, 1846, 1962
AvaI CYCGRG 2 cut(s) 482, 1996
AvaII GGWCC 1 cut(s) 332
BaeGI GKGCMC 3 cut(s) 416, 1501, 2049
BanI GGYRCC 2 cut(s) 69, 2044
BanII GRGCYC 3 cut(s) 42, 1059, 1854
BauI CACGAG 1 cut(s) 377
BbsI GAAGAC 3 cut(s) 9, 102, 1615
Bbv12I GWGCWC 4 cut(s) 416, 1501, 1854, 2016
BbvCI CCTCAGC 1 cut(s) 1575
BbvI GCAGC 8 cut(s) 169, 188, 191, 223, 433, 964, 1837, 1939
BccI CCATC 6 cut(s) 155, 617, 725, 1216, 1498, 1996
BceAI ACGGC 1 cut(s) 1266
BciT130I CCWGG 3 cut(s) 245, 1075, 1131
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 1 cut(s) 904
BcoDI GTCTC 1 cut(s) 2062
BfaI CTAG 5 cut(s) 1457, 1488, 1536, 1782, 1865
BfmI CTRYAG 2 cut(s) 604, 1881
BfoI RGCGCY 1 cut(s) 73
BfrI CTTAAG 1 cut(s) 701
BfuAI ACCTGC 2 cut(s) 1032, 1423
BglI GCCNNNNNGGC 1 cut(s) 1097
BisI GCNGC 8 cut(s) 177, 180, 183, 212, 447, 978, 1826, 1928
BlpI GCTNAGC 1 cut(s) 1570
BlsI GCNGC 8 cut(s) 178, 181, 184, 213, 448, 979, 1827, 1929
Bme1390I CCNGG 4 cut(s) 245, 904, 1075, 1131
Bme18I GGWCC 1 cut(s) 332
BmeT110I CYCGRG 2 cut(s) 482, 1996
BmgBI CACGTC 1 cut(s) 2022
BmgT120I GGNCC 4 cut(s) 332, 627, 1110, 1252
BmiI GGNNCC 8 cut(s) 39, 71, 628, 1072, 1111, 1254, 1878, 2046
BmrFI CCNGG 4 cut(s) 245, 904, 1075, 1131
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 4 cut(s) 163, 547, 1378, 1642
BmuI ACTGGG 1 cut(s) 348
BpiI GAAGAC 3 cut(s) 9, 102, 1615
BplI GAGNNNNNCTC 2 cut(s) 1841, 1873
BpmI CTGGAG 2 cut(s) 227, 2150
Bpu10I CCTNAGC 1 cut(s) 1575
Bpu1102I GCTNAGC 1 cut(s) 1570
BpuEI CTTGAG 2 cut(s) 1050, 1841
BpuMI CCSGG 1 cut(s) 904
BsaAI YACGTR 1 cut(s) 749
BsaBI GATNNNNATC 1 cut(s) 710
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 3 cut(s) 903, 1129, 1130
BsaWI WCCGGW 3 cut(s) 1607, 1901, 2054
BsaXI ACNNNNNCTCC 2 cut(s) 1998, 2028
Bsc4I CCNNNNNNNGG 7 cut(s) 79, 905, 1166, 1997, 1998, 2023, 2054
Bse118I RCCGGY 3 cut(s) 1607, 1901, 2124
Bse1I ACTGG 3 cut(s) 343, 1171, 2145
Bse3DI GCAATG 3 cut(s) 567, 1701, 1706
Bse8I GATNNNNATC 1 cut(s) 710
BseBI CCWGG 3 cut(s) 245, 1075, 1131
BseDI CCNNGG 3 cut(s) 903, 1129, 1130
BseGI GGATG 7 cut(s) 628, 804, 862, 1227, 1987, 2007, 2149
BseJI GATNNNNATC 1 cut(s) 710
BseLI CCNNNNNNNGG 7 cut(s) 79, 905, 1166, 1997, 1998, 2023, 2054
BseMI GCAATG 3 cut(s) 567, 1701, 1706
BseMII CTCAG 4 cut(s) 504, 1464, 1566, 1584
BseNI ACTGG 3 cut(s) 343, 1171, 2145
BseRI GAGGAG 1 cut(s) 1807
BseSI GKGCMC 3 cut(s) 416, 1501, 2049
BseXI GCAGC 8 cut(s) 169, 188, 191, 223, 433, 964, 1837, 1939
BseYI CCCAGC 1 cut(s) 41
BsgI GTGCAG 2 cut(s) 230, 858
Bsh1236I CGCG 1 cut(s) 1666
BshFI GGCC 4 cut(s) 383, 629, 1112, 1253
BshNI GGYRCC 2 cut(s) 69, 2044
BshTI ACCGGT 2 cut(s) 1607, 1901
BsiHKAI GWGCWC 4 cut(s) 416, 1501, 1854, 2016
BsiHKCI CYCGRG 2 cut(s) 482, 1996
BsiSI CCGG 8 cut(s) 73, 384, 903, 1608, 1902, 2055, 2090, 2125
BslI CCNNNNNNNGG 7 cut(s) 79, 905, 1166, 1997, 1998, 2023, 2054
BsmAI GTCTC 1 cut(s) 2062
BsnI GGCC 4 cut(s) 383, 629, 1112, 1253
BsoBI CYCGRG 2 cut(s) 482, 1996
Bsp1286I GDGCHC 7 cut(s) 42, 416, 1059, 1501, 1854, 2016, 2049
Bsp143I GATC 9 cut(s) 52, 130, 730, 942, 1282, 1522, 1696, 1940, 2082
Bsp1720I GCTNAGC 1 cut(s) 1570
BspACI CCGC 4 cut(s) 796, 1508, 1541, 2114
BspANI GGCC 4 cut(s) 383, 629, 1112, 1253
BspCNI CTCAG 4 cut(s) 505, 1465, 1567, 1583
BspFNI CGCG 1 cut(s) 1666
BspHI TCATGA 1 cut(s) 2035
BspLI GGNNCC 8 cut(s) 39, 71, 628, 1072, 1111, 1254, 1878, 2046
BspMI ACCTGC 2 cut(s) 1032, 1423
BspPI GGATC 4 cut(s) 47, 1530, 1704, 1948
BspQI GCTCTTC 1 cut(s) 987
BspT107I GGYRCC 2 cut(s) 69, 2044
BspTI CTTAAG 1 cut(s) 701
BsrDI GCAATG 3 cut(s) 567, 1701, 1706
BsrFI RCCGGY 3 cut(s) 1607, 1901, 2124
BsrI ACTGG 3 cut(s) 343, 1171, 2145
BssAI RCCGGY 3 cut(s) 1607, 1901, 2124
BssECI CCNNGG 3 cut(s) 903, 1129, 1130
BssMI GATC 9 cut(s) 52, 130, 730, 942, 1282, 1522, 1696, 1940, 2082
BssNAI GTATAC 1 cut(s) 1985
BssNI GRCGYC 1 cut(s) 70
BssSI CACGAG 1 cut(s) 377
Bst1107I GTATAC 1 cut(s) 1985
Bst2BI CACGAG 1 cut(s) 377
Bst2UI CCWGG 3 cut(s) 245, 1075, 1131
Bst4CI ACNGT 6 cut(s) 538, 1096, 1318, 1392, 1755, 1954
Bst6I CTCTTC 3 cut(s) 99, 933, 987
BstACI GRCGYC 1 cut(s) 70
BstAFI CTTAAG 1 cut(s) 701
BstAPI GCANNNNNTGC 1 cut(s) 182
BstBAI YACGTR 1 cut(s) 749
BstC8I GCNNGC 2 cut(s) 982, 1029
BstDEI CTNAG 6 cut(s) 513, 1358, 1473, 1570, 1575, 1712
BstF5I GGATG 7 cut(s) 628, 804, 862, 1227, 1987, 2007, 2149
BstFNI CGCG 1 cut(s) 1666
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 2 cut(s) 72, 1666
BstKTI GATC 9 cut(s) 55, 133, 733, 945, 1285, 1525, 1699, 1943, 2085
BstMAI GTCTC 1 cut(s) 2062
BstMBI GATC 9 cut(s) 52, 130, 730, 942, 1282, 1522, 1696, 1940, 2082
BstMWI GCNNNNNNNGC 9 cut(s) 182, 443, 986, 1033, 1097, 1505, 1547, 1661, 1825
BstNI CCWGG 3 cut(s) 245, 1075, 1131
BstSCI CCNGG 4 cut(s) 243, 902, 1073, 1129
BstSFI CTRYAG 2 cut(s) 604, 1881
BstSLI GKGCMC 3 cut(s) 416, 1501, 2049
BstUI CGCG 1 cut(s) 1666
BstV1I GCAGC 8 cut(s) 169, 188, 191, 223, 433, 964, 1837, 1939
BstV2I GAAGAC 3 cut(s) 9, 102, 1615
BstX2I RGATCY 2 cut(s) 52, 1940
BstYI RGATCY 2 cut(s) 52, 1940
BstZ17I GTATAC 1 cut(s) 1985
BsuRI GGCC 4 cut(s) 383, 629, 1112, 1253
BtrI CACGTC 1 cut(s) 2022
BtsCI GGATG 7 cut(s) 628, 804, 862, 1227, 1987, 2007, 2149
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 4 cut(s) 870, 1101, 1323, 1760
BveI ACCTGC 2 cut(s) 1032, 1423
Cac8I GCNNGC 2 cut(s) 982, 1029
CaiI CAGNNNCTG 1 cut(s) 182
CciI TCATGA 1 cut(s) 2035
CfoI GCGC 2 cut(s) 72, 1666
Cfr10I RCCGGY 3 cut(s) 1607, 1901, 2124
Cfr13I GGNCC 4 cut(s) 332, 627, 1110, 1252
Csp6I GTAC 3 cut(s) 1013, 1328, 2138
CspAI ACCGGT 2 cut(s) 1607, 1901
CviQI GTAC 3 cut(s) 1013, 1328, 2138
DdeI CTNAG 6 cut(s) 513, 1358, 1473, 1570, 1575, 1712
DinI GGCGCC 1 cut(s) 71
DpnI GATC 9 cut(s) 54, 132, 732, 944, 1284, 1524, 1698, 1942, 2084
DpnII GATC 9 cut(s) 52, 130, 730, 942, 1282, 1522, 1696, 1940, 2082
Eam1104I CTCTTC 3 cut(s) 99, 933, 987
EarI CTCTTC 3 cut(s) 99, 933, 987
EciI GGCGGA 2 cut(s) 811, 1523
Ecl136II GAGCTC 1 cut(s) 1852
Eco24I GRGCYC 3 cut(s) 42, 1059, 1854
Eco32I GATATC 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 332
Eco53kI GAGCTC 1 cut(s) 1852
Eco57I CTGAAG 2 cut(s) 1011, 1440
Eco88I CYCGRG 2 cut(s) 482, 1996
EcoICRI GAGCTC 1 cut(s) 1852
EcoRII CCWGG 3 cut(s) 243, 1073, 1129
EcoRV GATATC 1 cut(s) 655
EcoT22I ATGCAT 1 cut(s) 1729
EcoT38I GRGCYC 3 cut(s) 42, 1059, 1854
EgeI GGCGCC 1 cut(s) 71
EheI GGCGCC 1 cut(s) 71
FauNDI CATATG 1 cut(s) 1527
FbaI TGATCA 1 cut(s) 730
FblI GTMKAC 1 cut(s) 1984
Fnu4HI GCNGC 8 cut(s) 177, 180, 183, 212, 447, 978, 1826, 1928
FokI GGATG 6 cut(s) 635, 811, 869, 1234, 1974, 2014
FriOI GRGCYC 3 cut(s) 42, 1059, 1854
Fsp4HI GCNGC 8 cut(s) 177, 180, 183, 212, 447, 978, 1826, 1928
FspBI CTAG 5 cut(s) 1457, 1488, 1536, 1782, 1865
GlaI GCGC 2 cut(s) 71, 1665
GluI GCNGC 8 cut(s) 177, 180, 183, 212, 447, 978, 1826, 1928
GsaI CCCAGC 1 cut(s) 45
GsuI CTGGAG 2 cut(s) 227, 2150
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 4 cut(s) 383, 629, 1112, 1253
HapII CCGG 8 cut(s) 73, 384, 903, 1608, 1902, 2055, 2090, 2125
HhaI GCGC 2 cut(s) 72, 1666
Hin1I GRCGYC 1 cut(s) 70
Hin6I GCGC 2 cut(s) 70, 1664
HinP1I GCGC 2 cut(s) 70, 1664
HindIII AAGCTT 1 cut(s) 1817
HinfI GANTC 4 cut(s) 88, 310, 1616, 1967
HpaII CCGG 8 cut(s) 73, 384, 903, 1608, 1902, 2055, 2090, 2125
HphI GGTGA 7 cut(s) 176, 596, 919, 1490, 1591, 1846, 1962
Hpy166II GTNNAC 6 cut(s) 284, 414, 587, 1499, 1720, 1985
Hpy188I TCNGA 6 cut(s) 37, 52, 226, 514, 529, 722
Hpy188III TCNNGA 8 cut(s) 56, 92, 281, 453, 1763, 1811, 2017, 2036
Hpy8I GTNNAC 6 cut(s) 284, 414, 587, 1499, 1720, 1985
Hpy99I CGWCG 1 cut(s) 2023
HpyAV CCTTC 4 cut(s) 519, 1072, 1831, 1882
HpyCH4III ACNGT 6 cut(s) 538, 1096, 1318, 1392, 1755, 1954
HpyCH4IV ACGT 2 cut(s) 748, 2021
HpyF10VI GCNNNNNNNGC 9 cut(s) 182, 443, 986, 1033, 1097, 1505, 1547, 1661, 1825
HpyF3I CTNAG 6 cut(s) 513, 1358, 1473, 1570, 1575, 1712
HpySE526I ACGT 2 cut(s) 748, 2021
Hsp92I GRCGYC 1 cut(s) 70
HspAI GCGC 2 cut(s) 70, 1664
KasI GGCGCC 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 9 cut(s) 52, 130, 730, 942, 1282, 1522, 1696, 1940, 2082
LguI GCTCTTC 1 cut(s) 987
LmnI GCTCC 8 cut(s) 37, 226, 246, 772, 1070, 1876, 2019, 2116
Lsp1109I GCAGC 8 cut(s) 169, 188, 191, 223, 433, 964, 1837, 1939
LweI GCATC 4 cut(s) 163, 547, 1378, 1642
MaeI CTAG 5 cut(s) 1457, 1488, 1536, 1782, 1865
MaeII ACGT 2 cut(s) 748, 2021
MaeIII GTNAC 4 cut(s) 744, 809, 1760, 2074
MalI GATC 9 cut(s) 54, 132, 732, 944, 1284, 1524, 1698, 1942, 2084
MboI GATC 9 cut(s) 52, 130, 730, 942, 1282, 1522, 1696, 1940, 2082
MfeI CAATTG 3 cut(s) 287, 962, 1554
MflI RGATCY 2 cut(s) 52, 1940
MhlI GDGCHC 7 cut(s) 42, 416, 1059, 1501, 1854, 2016, 2049
MluCI AATT 9 cut(s) 215, 220, 287, 819, 962, 1288, 1381, 1554, 1741
Mly113I GGCGCC 1 cut(s) 70
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 359
Mph1103I ATGCAT 1 cut(s) 1729
MroXI GAANNNNTTC 1 cut(s) 1082
MseI TTAA 6 cut(s) 138, 671, 702, 1178, 1380, 2152
MslI CAYNNNNRTG 2 cut(s) 1650, 1756
MspA1I CMGCKG 2 cut(s) 182, 1574
MspCI CTTAAG 1 cut(s) 701
MspI CCGG 8 cut(s) 73, 384, 903, 1608, 1902, 2055, 2090, 2125
MspR9I CCNGG 4 cut(s) 245, 904, 1075, 1131
MunI CAATTG 3 cut(s) 287, 962, 1554
MvaI CCWGG 3 cut(s) 245, 1075, 1131
MvnI CGCG 1 cut(s) 1666
MwoI GCNNNNNNNGC 9 cut(s) 182, 443, 986, 1033, 1097, 1505, 1547, 1661, 1825
NarI GGCGCC 1 cut(s) 70
NciI CCSGG 1 cut(s) 904
NdeI CATATG 1 cut(s) 1527
NdeII GATC 9 cut(s) 52, 130, 730, 942, 1282, 1522, 1696, 1940, 2082
NlaIV GGNNCC 8 cut(s) 39, 71, 628, 1072, 1111, 1254, 1878, 2046
NmeAIII GCCGAG 1 cut(s) 1057
NmuCI GTSAC 2 cut(s) 809, 1760
NsiI ATGCAT 1 cut(s) 1729
OliI CACNNNNGTG 1 cut(s) 1756
PagI TCATGA 1 cut(s) 2035
PaqCI CACCTGC 1 cut(s) 1423
PasI CCCWGGG 1 cut(s) 1130
PciSI GCTCTTC 1 cut(s) 987
PdmI GAANNNNTTC 1 cut(s) 1082
PfeI GAWTC 3 cut(s) 310, 1616, 1967
PflMI CCANNNNNTGG 1 cut(s) 1166
PfoI TCCNGGA 1 cut(s) 243
PinAI ACCGGT 2 cut(s) 1607, 1901
PkrI GCNGC 8 cut(s) 178, 181, 184, 213, 448, 979, 1827, 1929
PleI GAGTC 1 cut(s) 96
PluTI GGCGCC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 96
Ppu21I YACGTR 1 cut(s) 749
PsiI TTATAA 1 cut(s) 1155
Psp124BI GAGCTC 1 cut(s) 1854
Psp6I CCWGG 3 cut(s) 243, 1073, 1129
PspFI CCCAGC 1 cut(s) 41
PspGI CCWGG 3 cut(s) 243, 1073, 1129
PspN4I GGNNCC 8 cut(s) 39, 71, 628, 1072, 1111, 1254, 1878, 2046
PspPI GGNCC 4 cut(s) 332, 627, 1110, 1252
PsrI GAACNNNNNNTAC 2 cut(s) 136, 168
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 2 cut(s) 52, 1940
PvuII CAGCTG 2 cut(s) 182, 1574
RsaI GTAC 3 cut(s) 1014, 1329, 2139
RsaNI GTAC 3 cut(s) 1013, 1328, 2138
RseI CAYNNNNRTG 2 cut(s) 1650, 1756
SacI GAGCTC 1 cut(s) 1854
SapI GCTCTTC 1 cut(s) 987
SaqAI TTAA 6 cut(s) 138, 671, 702, 1178, 1380, 2152
SatI GCNGC 8 cut(s) 177, 180, 183, 212, 447, 978, 1826, 1928
Sau3AI GATC 9 cut(s) 52, 130, 730, 942, 1282, 1522, 1696, 1940, 2082
Sau96I GGNCC 4 cut(s) 332, 627, 1110, 1252
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 4 cut(s) 245, 904, 1075, 1131
SduI GDGCHC 7 cut(s) 42, 416, 1059, 1501, 1854, 2016, 2049
SfaNI GCATC 4 cut(s) 163, 547, 1378, 1642
SfcI CTRYAG 2 cut(s) 604, 1881
SfoI GGCGCC 1 cut(s) 71
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 2 cut(s) 1650, 1756
SmlI CTYRAG 3 cut(s) 701, 1065, 1820
SmoI CTYRAG 3 cut(s) 701, 1065, 1820
Sse9I AATT 9 cut(s) 215, 220, 287, 819, 962, 1288, 1381, 1554, 1741
SsiI CCGC 4 cut(s) 796, 1508, 1541, 2114
SspDI GGCGCC 1 cut(s) 69
SspMI CTAG 5 cut(s) 1457, 1488, 1536, 1782, 1865
SstI GAGCTC 1 cut(s) 1854
StyD4I CCNGG 4 cut(s) 243, 902, 1073, 1129
TaaI ACNGT 6 cut(s) 538, 1096, 1318, 1392, 1755, 1954
TaiI ACGT 2 cut(s) 751, 2024
TaqI TCGA 4 cut(s) 294, 685, 945, 1630
TasI AATT 9 cut(s) 215, 220, 287, 819, 962, 1288, 1381, 1554, 1741
TatI WGTACW 2 cut(s) 1327, 2137
TfiI GAWTC 3 cut(s) 310, 1616, 1967
Tru1I TTAA 6 cut(s) 138, 671, 702, 1178, 1380, 2152
Tru9I TTAA 6 cut(s) 138, 671, 702, 1178, 1380, 2152
TscAI CASTG 4 cut(s) 877, 1101, 1323, 1760
TseFI GTSAC 2 cut(s) 809, 1760
TseI GCWGC 8 cut(s) 176, 179, 182, 211, 446, 977, 1825, 1927
Tsp45I GTSAC 2 cut(s) 809, 1760
TspDTI ATGAA 8 cut(s) 117, 216, 588, 845, 951, 1032, 1667, 1949
TspGWI ACGGA 1 cut(s) 1970
TspRI CASTG 4 cut(s) 877, 1101, 1323, 1760
Van91I CCANNNNNTGG 1 cut(s) 1166
Vha464I CTTAAG 1 cut(s) 701
VneI GTGCAC 2 cut(s) 412, 1497
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 1 cut(s) 1741
XcmI CCANNNNNNNNNTGG 2 cut(s) 1329, 1999
XmiI GTMKAC 1 cut(s) 1984
XmnI GAANNNNTTC 1 cut(s) 1082
XspI CTAG 5 cut(s) 1457, 1488, 1536, 1782, 1865
Zsp2I ATGCAT 1 cut(s) 1729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.