Pre-mRNA-splicing factor ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HA2_C | PF21010 | 380 - 440 | 7.5e-09 | Helicase associated domain (HA2), ratchet-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 849 |
| AarI | CACCTGC | 1 cut(s) | 1033 |
| Acc36I | ACCTGC | 2 cut(s) | 726, 1033 |
| AccB1I | GGYRCC | 1 cut(s) | 72 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 860 |
| AccII | CGCG | 1 cut(s) | 1276 |
| AciI | CCGC | 2 cut(s) | 1118, 1151 |
| AclWI | GGATC | 2 cut(s) | 1140, 1314 |
| AcuI | CTGAAG | 1 cut(s) | 1050 |
| AfaI | GTAC | 3 cut(s) | 708, 939, 1172 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 82, 599, 860 |
| AflII | CTTAAG | 2 cut(s) | 539, 968 |
| AgeI | ACCGGT | 1 cut(s) | 1217 |
| AgsI | TTSAA | 6 cut(s) | 143, 382, 641, 661, 734, 1164 |
| AjnI | CCWGG | 3 cut(s) | 767, 823, 918 |
| AleI | CACNNNNGTG | 1 cut(s) | 78 |
| AluBI | AGCT | 7 cut(s) | 319, 441, 664, 674, 691, 973, 1184 |
| AluI | AGCT | 7 cut(s) | 319, 441, 664, 674, 691, 973, 1184 |
| Alw21I | GWGCWC | 1 cut(s) | 254 |
| Alw44I | GTGCAC | 1 cut(s) | 250 |
| AlwI | GGATC | 2 cut(s) | 1140, 1314 |
| Ama87I | CYCGRG | 1 cut(s) | 320 |
| AoxI | GGCC | 4 cut(s) | 219, 465, 765, 804 |
| ApaLI | GTGCAC | 1 cut(s) | 250 |
| ApeKI | GCWGC | 2 cut(s) | 284, 671 |
| AsiGI | ACCGGT | 1 cut(s) | 1217 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 776 |
| AspLEI | GCGC | 1 cut(s) | 1276 |
| AspS9I | GGNCC | 4 cut(s) | 170, 465, 765, 804 |
| AsuC2I | CCSGG | 1 cut(s) | 598 |
| AsuHPI | GGTGA | 5 cut(s) | 434, 613, 1100, 1201, 1235 |
| AvaI | CYCGRG | 1 cut(s) | 320 |
| AvaII | GGWCC | 1 cut(s) | 170 |
| BaeGI | GKGCMC | 1 cut(s) | 254 |
| BanI | GGYRCC | 1 cut(s) | 72 |
| BanII | GRGCYC | 1 cut(s) | 753 |
| BauI | CACGAG | 2 cut(s) | 215, 1050 |
| BbsI | GAAGAC | 3 cut(s) | 9, 105, 1225 |
| Bbv12I | GWGCWC | 1 cut(s) | 254 |
| BbvCI | CCTCAGC | 1 cut(s) | 1185 |
| BbvI | GCAGC | 2 cut(s) | 271, 683 |
| BccI | CCATC | 2 cut(s) | 455, 1108 |
| BciT130I | CCWGG | 3 cut(s) | 769, 825, 920 |
| BclI | TGATCA | 1 cut(s) | 568 |
| BcnI | CCSGG | 1 cut(s) | 598 |
| BfaI | CTAG | 3 cut(s) | 42, 1067, 1146 |
| BfmI | CTRYAG | 1 cut(s) | 442 |
| BfrI | CTTAAG | 2 cut(s) | 539, 968 |
| BfuAI | ACCTGC | 2 cut(s) | 726, 1033 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 727, 791 |
| BisI | GCNGC | 2 cut(s) | 285, 672 |
| BlpI | GCTNAGC | 1 cut(s) | 1180 |
| BlsI | GCNGC | 2 cut(s) | 286, 673 |
| Bme1390I | CCNGG | 4 cut(s) | 598, 769, 825, 920 |
| Bme18I | GGWCC | 1 cut(s) | 170 |
| BmeT110I | CYCGRG | 1 cut(s) | 320 |
| BmgT120I | GGNCC | 4 cut(s) | 170, 465, 765, 804 |
| BmiI | GGNNCC | 4 cut(s) | 74, 466, 766, 805 |
| BmrFI | CCNGG | 4 cut(s) | 598, 769, 825, 920 |
| BmrI | ACTGGG | 2 cut(s) | 186, 870 |
| BmsI | GCATC | 3 cut(s) | 924, 988, 1252 |
| BmuI | ACTGGG | 2 cut(s) | 186, 870 |
| BpiI | GAAGAC | 3 cut(s) | 9, 105, 1225 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1185 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1180 |
| BpuEI | CTTGAG | 1 cut(s) | 744 |
| BpuMI | CCSGG | 1 cut(s) | 598 |
| BsaBI | GATNNNNATC | 1 cut(s) | 548 |
| BsaJI | CCNNGG | 3 cut(s) | 597, 823, 824 |
| BsaWI | WCCGGW | 3 cut(s) | 75, 557, 1217 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 82, 599, 860 |
| Bse118I | RCCGGY | 1 cut(s) | 1217 |
| Bse1I | ACTGG | 2 cut(s) | 181, 865 |
| Bse3DI | GCAATG | 2 cut(s) | 1311, 1316 |
| Bse8I | GATNNNNATC | 1 cut(s) | 548 |
| BseBI | CCWGG | 3 cut(s) | 769, 825, 920 |
| BseDI | CCNNGG | 3 cut(s) | 597, 823, 824 |
| BseGI | GGATG | 2 cut(s) | 466, 915 |
| BseJI | GATNNNNATC | 1 cut(s) | 548 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 82, 599, 860 |
| BseMI | GCAATG | 2 cut(s) | 1311, 1316 |
| BseMII | CTCAG | 4 cut(s) | 342, 1074, 1176, 1194 |
| BseNI | ACTGG | 2 cut(s) | 181, 865 |
| BseSI | GKGCMC | 1 cut(s) | 254 |
| BseXI | GCAGC | 2 cut(s) | 271, 683 |
| BseYI | CCCAGC | 1 cut(s) | 725 |
| Bsh1236I | CGCG | 1 cut(s) | 1276 |
| BshFI | GGCC | 4 cut(s) | 221, 467, 767, 806 |
| BshNI | GGYRCC | 1 cut(s) | 72 |
| BshTI | ACCGGT | 1 cut(s) | 1217 |
| BsiHKAI | GWGCWC | 1 cut(s) | 254 |
| BsiHKCI | CYCGRG | 1 cut(s) | 320 |
| BsiSI | CCGG | 5 cut(s) | 76, 222, 558, 597, 1218 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 82, 599, 860 |
| BsnI | GGCC | 4 cut(s) | 221, 467, 767, 806 |
| BsoBI | CYCGRG | 1 cut(s) | 320 |
| Bsp1286I | GDGCHC | 2 cut(s) | 254, 753 |
| Bsp143I | GATC | 5 cut(s) | 133, 568, 625, 1132, 1306 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1180 |
| BspACI | CCGC | 2 cut(s) | 1118, 1151 |
| BspANI | GGCC | 4 cut(s) | 221, 467, 767, 806 |
| BspCNI | CTCAG | 4 cut(s) | 343, 1075, 1177, 1193 |
| BspFNI | CGCG | 1 cut(s) | 1276 |
| BspHI | TCATGA | 1 cut(s) | 628 |
| BspLI | GGNNCC | 4 cut(s) | 74, 466, 766, 805 |
| BspMI | ACCTGC | 2 cut(s) | 726, 1033 |
| BspPI | GGATC | 2 cut(s) | 1140, 1314 |
| BspT107I | GGYRCC | 1 cut(s) | 72 |
| BspTI | CTTAAG | 2 cut(s) | 539, 968 |
| BsrDI | GCAATG | 2 cut(s) | 1311, 1316 |
| BsrFI | RCCGGY | 1 cut(s) | 1217 |
| BsrI | ACTGG | 2 cut(s) | 181, 865 |
| BssAI | RCCGGY | 1 cut(s) | 1217 |
| BssECI | CCNNGG | 3 cut(s) | 597, 823, 824 |
| BssMI | GATC | 5 cut(s) | 133, 568, 625, 1132, 1306 |
| BssSI | CACGAG | 2 cut(s) | 215, 1050 |
| Bst2BI | CACGAG | 2 cut(s) | 215, 1050 |
| Bst2UI | CCWGG | 3 cut(s) | 769, 825, 920 |
| Bst4CI | ACNGT | 3 cut(s) | 376, 790, 1002 |
| Bst6I | CTCTTC | 1 cut(s) | 627 |
| BstAFI | CTTAAG | 2 cut(s) | 539, 968 |
| BstC8I | GCNNGC | 2 cut(s) | 676, 723 |
| BstDEI | CTNAG | 5 cut(s) | 351, 1083, 1180, 1185, 1322 |
| BstF5I | GGATG | 2 cut(s) | 466, 915 |
| BstFNI | CGCG | 1 cut(s) | 1276 |
| BstHHI | GCGC | 1 cut(s) | 1276 |
| BstKTI | GATC | 5 cut(s) | 136, 571, 628, 1135, 1309 |
| BstMBI | GATC | 5 cut(s) | 133, 568, 625, 1132, 1306 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 281, 680, 727, 791, 1115, 1157, 1271 |
| BstNI | CCWGG | 3 cut(s) | 769, 825, 920 |
| BstSCI | CCNGG | 4 cut(s) | 596, 767, 823, 918 |
| BstSFI | CTRYAG | 1 cut(s) | 442 |
| BstSLI | GKGCMC | 1 cut(s) | 254 |
| BstUI | CGCG | 1 cut(s) | 1276 |
| BstV1I | GCAGC | 2 cut(s) | 271, 683 |
| BstV2I | GAAGAC | 3 cut(s) | 9, 105, 1225 |
| BsuRI | GGCC | 4 cut(s) | 221, 467, 767, 806 |
| BtsCI | GGATG | 2 cut(s) | 466, 915 |
| BtsIMutI | CAGTG | 1 cut(s) | 795 |
| BveI | ACCTGC | 2 cut(s) | 726, 1033 |
| Cac8I | GCNNGC | 2 cut(s) | 676, 723 |
| CciI | TCATGA | 1 cut(s) | 628 |
| CfoI | GCGC | 1 cut(s) | 1276 |
| Cfr10I | RCCGGY | 1 cut(s) | 1217 |
| Cfr13I | GGNCC | 4 cut(s) | 170, 465, 765, 804 |
| Csp6I | GTAC | 3 cut(s) | 707, 938, 1171 |
| CspAI | ACCGGT | 1 cut(s) | 1217 |
| CviAII | CATG | 8 cut(s) | 263, 326, 410, 572, 629, 710, 1207, 1338 |
| CviQI | GTAC | 3 cut(s) | 707, 938, 1171 |
| DdeI | CTNAG | 5 cut(s) | 351, 1083, 1180, 1185, 1322 |
| DpnI | GATC | 5 cut(s) | 135, 570, 627, 1134, 1308 |
| DpnII | GATC | 5 cut(s) | 133, 568, 625, 1132, 1306 |
| Eam1104I | CTCTTC | 1 cut(s) | 627 |
| EarI | CTCTTC | 1 cut(s) | 627 |
| EciI | GGCGGA | 1 cut(s) | 1133 |
| Eco24I | GRGCYC | 1 cut(s) | 753 |
| Eco32I | GATATC | 1 cut(s) | 493 |
| Eco47I | GGWCC | 1 cut(s) | 170 |
| Eco57I | CTGAAG | 1 cut(s) | 1050 |
| Eco88I | CYCGRG | 1 cut(s) | 320 |
| EcoRII | CCWGG | 3 cut(s) | 767, 823, 918 |
| EcoRV | GATATC | 1 cut(s) | 493 |
| EcoT22I | ATGCAT | 1 cut(s) | 1339 |
| EcoT38I | GRGCYC | 1 cut(s) | 753 |
| FaeI | CATG | 8 cut(s) | 266, 329, 413, 575, 632, 713, 1210, 1341 |
| FatI | CATG | 8 cut(s) | 262, 325, 409, 571, 628, 709, 1206, 1337 |
| FauNDI | CATATG | 1 cut(s) | 1137 |
| FbaI | TGATCA | 1 cut(s) | 568 |
| Fnu4HI | GCNGC | 2 cut(s) | 285, 672 |
| FokI | GGATG | 2 cut(s) | 473, 902 |
| FriOI | GRGCYC | 1 cut(s) | 753 |
| Fsp4HI | GCNGC | 2 cut(s) | 285, 672 |
| FspBI | CTAG | 3 cut(s) | 42, 1067, 1146 |
| GlaI | GCGC | 1 cut(s) | 1275 |
| GluI | GCNGC | 2 cut(s) | 285, 672 |
| GsaI | CCCAGC | 1 cut(s) | 729 |
| HaeIII | GGCC | 4 cut(s) | 221, 467, 767, 806 |
| HapII | CCGG | 5 cut(s) | 76, 222, 558, 597, 1218 |
| HhaI | GCGC | 1 cut(s) | 1276 |
| Hin1II | CATG | 8 cut(s) | 266, 329, 413, 575, 632, 713, 1210, 1341 |
| Hin6I | GCGC | 1 cut(s) | 1274 |
| HinP1I | GCGC | 1 cut(s) | 1274 |
| HindIII | AAGCTT | 1 cut(s) | 971 |
| HinfI | GANTC | 3 cut(s) | 91, 148, 1226 |
| HpaII | CCGG | 5 cut(s) | 76, 222, 558, 597, 1218 |
| HphI | GGTGA | 5 cut(s) | 434, 613, 1100, 1201, 1235 |
| Hpy166II | GTNNAC | 4 cut(s) | 252, 425, 590, 1330 |
| Hpy188I | TCNGA | 5 cut(s) | 24, 37, 52, 352, 367 |
| Hpy188III | TCNNGA | 4 cut(s) | 95, 291, 629, 1050 |
| Hpy8I | GTNNAC | 4 cut(s) | 252, 425, 590, 1330 |
| HpyAV | CCTTC | 3 cut(s) | 101, 357, 766 |
| HpyCH4III | ACNGT | 3 cut(s) | 376, 790, 1002 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 281, 680, 727, 791, 1115, 1157, 1271 |
| HpyF3I | CTNAG | 5 cut(s) | 351, 1083, 1180, 1185, 1322 |
| Hsp92II | CATG | 8 cut(s) | 266, 329, 413, 575, 632, 713, 1210, 1341 |
| HspAI | GCGC | 1 cut(s) | 1274 |
| Ksp22I | TGATCA | 1 cut(s) | 568 |
| Kzo9I | GATC | 5 cut(s) | 133, 568, 625, 1132, 1306 |
| Lsp1109I | GCAGC | 2 cut(s) | 271, 683 |
| LweI | GCATC | 3 cut(s) | 924, 988, 1252 |
| MaeI | CTAG | 3 cut(s) | 42, 1067, 1146 |
| MalI | GATC | 5 cut(s) | 135, 570, 627, 1134, 1308 |
| MboI | GATC | 5 cut(s) | 133, 568, 625, 1132, 1306 |
| MboII | GAAGA | 9 cut(s) | 3, 9, 110, 253, 512, 644, 662, 665, 1225 |
| MfeI | CAATTG | 1 cut(s) | 1164 |
| MhlI | GDGCHC | 2 cut(s) | 254, 753 |
| MluCI | AATT | 4 cut(s) | 111, 656, 991, 1164 |
| MlyI | GAGTC | 1 cut(s) | 100 |
| MmeI | TCCRAC | 1 cut(s) | 197 |
| Mph1103I | ATGCAT | 1 cut(s) | 1339 |
| MroXI | GAANNNNTTC | 1 cut(s) | 776 |
| MseI | TTAA | 7 cut(s) | 485, 509, 540, 584, 872, 969, 990 |
| MslI | CAYNNNNRTG | 2 cut(s) | 78, 1260 |
| MspA1I | CMGCKG | 2 cut(s) | 674, 1184 |
| MspCI | CTTAAG | 2 cut(s) | 539, 968 |
| MspI | CCGG | 5 cut(s) | 76, 222, 558, 597, 1218 |
| MspR9I | CCNGG | 4 cut(s) | 598, 769, 825, 920 |
| MunI | CAATTG | 1 cut(s) | 1164 |
| MvaI | CCWGG | 3 cut(s) | 769, 825, 920 |
| MvnI | CGCG | 1 cut(s) | 1276 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 281, 680, 727, 791, 1115, 1157, 1271 |
| NciI | CCSGG | 1 cut(s) | 598 |
| NdeI | CATATG | 1 cut(s) | 1137 |
| NdeII | GATC | 5 cut(s) | 133, 568, 625, 1132, 1306 |
| NlaIII | CATG | 8 cut(s) | 266, 329, 413, 575, 632, 713, 1210, 1341 |
| NlaIV | GGNNCC | 4 cut(s) | 74, 466, 766, 805 |
| NsiI | ATGCAT | 1 cut(s) | 1339 |
| OliI | CACNNNNGTG | 1 cut(s) | 78 |
| PagI | TCATGA | 1 cut(s) | 628 |
| PaqCI | CACCTGC | 1 cut(s) | 1033 |
| PasI | CCCWGGG | 1 cut(s) | 824 |
| PdmI | GAANNNNTTC | 1 cut(s) | 776 |
| PfeI | GAWTC | 2 cut(s) | 148, 1226 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 860 |
| PinAI | ACCGGT | 1 cut(s) | 1217 |
| PkrI | GCNGC | 2 cut(s) | 286, 673 |
| PleI | GAGTC | 1 cut(s) | 99 |
| PpsI | GAGTC | 1 cut(s) | 99 |
| PsiI | TTATAA | 1 cut(s) | 849 |
| Psp6I | CCWGG | 3 cut(s) | 767, 823, 918 |
| PspFI | CCCAGC | 1 cut(s) | 725 |
| PspGI | CCWGG | 3 cut(s) | 767, 823, 918 |
| PspN4I | GGNNCC | 4 cut(s) | 74, 466, 766, 805 |
| PspPI | GGNCC | 4 cut(s) | 170, 465, 765, 804 |
| PvuII | CAGCTG | 2 cut(s) | 674, 1184 |
| RsaI | GTAC | 3 cut(s) | 708, 939, 1172 |
| RsaNI | GTAC | 3 cut(s) | 707, 938, 1171 |
| RseI | CAYNNNNRTG | 2 cut(s) | 78, 1260 |
| SaqAI | TTAA | 7 cut(s) | 485, 509, 540, 584, 872, 969, 990 |
| SatI | GCNGC | 2 cut(s) | 285, 672 |
| Sau3AI | GATC | 5 cut(s) | 133, 568, 625, 1132, 1306 |
| Sau96I | GGNCC | 4 cut(s) | 170, 465, 765, 804 |
| SchI | GAGTC | 1 cut(s) | 100 |
| ScrFI | CCNGG | 4 cut(s) | 598, 769, 825, 920 |
| SduI | GDGCHC | 2 cut(s) | 254, 753 |
| SfaNI | GCATC | 3 cut(s) | 924, 988, 1252 |
| SfcI | CTRYAG | 1 cut(s) | 442 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1217 |
| SinI | GGWCC | 1 cut(s) | 170 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 78, 1260 |
| SmlI | CTYRAG | 3 cut(s) | 539, 759, 968 |
| SmoI | CTYRAG | 3 cut(s) | 539, 759, 968 |
| Sse9I | AATT | 4 cut(s) | 111, 656, 991, 1164 |
| SsiI | CCGC | 2 cut(s) | 1118, 1151 |
| SspMI | CTAG | 3 cut(s) | 42, 1067, 1146 |
| StyD4I | CCNGG | 4 cut(s) | 596, 767, 823, 918 |
| TaaI | ACNGT | 3 cut(s) | 376, 790, 1002 |
| TaqI | TCGA | 2 cut(s) | 523, 1240 |
| TasI | AATT | 4 cut(s) | 111, 656, 991, 1164 |
| TatI | WGTACW | 2 cut(s) | 937, 1170 |
| TfiI | GAWTC | 2 cut(s) | 148, 1226 |
| Tru1I | TTAA | 7 cut(s) | 485, 509, 540, 584, 872, 969, 990 |
| Tru9I | TTAA | 7 cut(s) | 485, 509, 540, 584, 872, 969, 990 |
| TscAI | CASTG | 1 cut(s) | 795 |
| TseI | GCWGC | 2 cut(s) | 284, 671 |
| TspDTI | ATGAA | 6 cut(s) | 120, 411, 426, 645, 726, 1277 |
| TspGWI | ACGGA | 1 cut(s) | 958 |
| TspRI | CASTG | 1 cut(s) | 795 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 860 |
| Vha464I | CTTAAG | 2 cut(s) | 539, 968 |
| VneI | GTGCAC | 1 cut(s) | 250 |
| VpaK11BI | GGWCC | 1 cut(s) | 170 |
| XmnI | GAANNNNTTC | 1 cut(s) | 776 |
| XspI | CTAG | 3 cut(s) | 42, 1067, 1146 |
| Zsp2I | ATGCAT | 1 cut(s) | 1339 |