Rorug05G0421000

Pre-mRNA-splicing factor ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
58512040 .. 58515627
3588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0421000.1

Sequence Viewer

Length: 1152 bp
ATGCAGAGTAGCATAGCAGCAGCAGAAACAGTTGGTCACAACGAAGACCTCCTCAAACAGCTTCTCCTGCGCTTACCAGCTAAATCACTCATCCGCTTCAAATGCGTCTCTAAGCTTTGGCTCTCTCTCATATCCAGCCCCAAATTCTGCGACTCCCACACCCTCCGAAACCCAATCCTTAAATTCCCCTCCGCCTTCTTCTTGAGCAGAACCGCCACAACAGACCCCCAATTCATCTCCCTCCTTCCAAACACCAATCCAAACCCATCCAAGCCTCTCAATTTCATCCCGGACCCACAAGGCCTCCAGATTCTTCAGTCCTGCAATGGCTTGCTCTTGTGTTGTTCCTCCACAGATAAATTCACAATCCCCAGCAAATTCTATGTTGTCAATCCCACAACTAGCCGATTCTCGGAAATTGCTCTTCCGCCTCCCTCTCCTACTAAACCCGAACCCGCAAGGCTCTTGAGTGTTGCTTTGGCTTTTGATCCTTCCAAATCGCTTCATTATAATGTGGTTTGCGTTTCGGGCTCCGGTACCGTTCCTTCATTGCATCTGGAGATTGAGATTGAGATATATTCGTCTCATACTCGAACCTGGAGGGCCGGTGAGTCTACTCATATGTGGTTTCCATCAATTGGTAAGTTCCTACCCGGTGTATACTGCAATGGGAGGATTCATTGGCTCAGCACGTTTTGTTGGTTGGTTCACTATGACATAGATGAAGGGCATTATGGAGTGGTGGATGAGCTGGGTGCTCCCGGTTTTTCGGTGGAGAAGGAATGCATGTGTTTTGGGGAGTCTGGTGGCCGTTTGCATCTTATTGAAATGTATGGGAGTGGTCTAAACAAGCTTCGTGTGCTGGAGATGGGGAAGGACTACTCTGGCTGGTTTGTCAAGTACCGGGTTGATCTTAATCTCATCACTCCCGCCTTTCCTTATACTCCTGCTGCATCCTGTCGTCCATTTTTCTTTCTTGATGCAGAGGAAAACGAGGAACAGAATCCAGTTCTTGTGCTGCGCATGGGTTATAAGTTCATCTCCTATGACATCAGGGATAAGAGCTGTAAGACACTCTGTGATTTGTTCATACCTTCGCTGGTTGGATGGAGAGATGCCTATCAATATATGGAGACTTTGGCTTGTGTGTAA

Protein Analysis

383

Amino Acids

43.03

Weight (kDa)

6.78

Isoelectric Point (pI)

56.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 50 9.7e-07 F-box domain
b-prop_At3g26010-like PF24750 104 - 313 4.8e-07 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 105 - 230 6.5e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 510, 1032
Acc16I TGCGCA 1 cut(s) 1022
Acc65I GGTACC 1 cut(s) 536
AccB1I GGYRCC 1 cut(s) 536
AccB7I CCANNNNNTGG 1 cut(s) 638
AccI GTMKAC 2 cut(s) 614, 660
AciI CCGC 6 cut(s) 94, 192, 213, 428, 456, 930
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 808
AcsI RAATTY 4 cut(s) 143, 182, 359, 377
AcuI CTGAAG 1 cut(s) 299
AdeI CACNNNGTG 1 cut(s) 1079
AfaI GTAC 2 cut(s) 538, 902
AfiI CCNNNNNNNGG 2 cut(s) 412, 638
AgsI TTSAA 2 cut(s) 100, 827
AjnI CCWGG 1 cut(s) 596
AluBI AGCT 6 cut(s) 61, 80, 115, 751, 853, 1065
AluI AGCT 6 cut(s) 61, 80, 115, 751, 853, 1065
Alw21I GWGCWC 1 cut(s) 760
Alw26I GTCTC 3 cut(s) 112, 588, 1127
AlwI GGATC 1 cut(s) 482
AoxI GGCC 3 cut(s) 301, 603, 808
ApeKI GCWGC 4 cut(s) 17, 20, 950, 1018
ApoI RAATTY 4 cut(s) 143, 182, 359, 377
Asp718I GGTACC 1 cut(s) 536
AspLEI GCGC 2 cut(s) 72, 1023
AspS9I GGNCC 2 cut(s) 292, 603
AsuC2I CCSGG 4 cut(s) 290, 654, 762, 905
AsuHPI GGTGA 1 cut(s) 620
AvaII GGWCC 1 cut(s) 292
BanI GGYRCC 1 cut(s) 536
BanII GRGCYC 1 cut(s) 533
BarI GAAGNNNNNNTAC 2 cut(s) 529, 561
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 760
BbvI GCAGC 4 cut(s) 29, 32, 937, 1005
BccI CCATC 4 cut(s) 274, 640, 862, 1101
BceAI ACGGC 1 cut(s) 795
BciT130I CCWGG 1 cut(s) 598
BcnI CCSGG 4 cut(s) 290, 654, 762, 905
BcoDI GTCTC 3 cut(s) 112, 588, 1127
BfaI CTAG 1 cut(s) 402
BisI GCNGC 4 cut(s) 18, 21, 951, 1019
BlpI GCTNAGC 1 cut(s) 686
BlsI GCNGC 4 cut(s) 19, 22, 952, 1020
Bme1390I CCNGG 5 cut(s) 290, 598, 654, 762, 905
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 2 cut(s) 292, 603
BmiI GGNNCC 3 cut(s) 294, 532, 538
BmrFI CCNGG 5 cut(s) 290, 598, 654, 762, 905
BmsI GCATC 5 cut(s) 562, 826, 962, 970, 1105
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 4 cut(s) 290, 578, 619, 884
Bpu1102I GCTNAGC 1 cut(s) 686
BpuEI CTTGAG 2 cut(s) 223, 487
BpuMI CCSGG 4 cut(s) 290, 654, 762, 905
BsaBI GATNNNNATC 2 cut(s) 915, 1119
BsaWI WCCGGW 1 cut(s) 533
BsaXI ACNNNNNCTCC 6 cut(s) 48, 78, 288, 318, 592, 622
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 638
Bse118I RCCGGY 1 cut(s) 605
Bse1I ACTGG 1 cut(s) 1007
Bse3DI GCAATG 3 cut(s) 331, 548, 673
Bse8I GATNNNNATC 2 cut(s) 915, 1119
BseBI CCWGG 1 cut(s) 598
BseGI GGATG 6 cut(s) 90, 266, 285, 751, 953, 1112
BseJI GATNNNNATC 2 cut(s) 915, 1119
BseLI CCNNNNNNNGG 2 cut(s) 412, 638
BseMI GCAATG 3 cut(s) 331, 548, 673
BseMII CTCAG 1 cut(s) 700
BseNI ACTGG 1 cut(s) 1007
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 4 cut(s) 29, 32, 937, 1005
BseYI CCCAGC 2 cut(s) 371, 751
BshFI GGCC 3 cut(s) 303, 605, 810
BshNI GGYRCC 1 cut(s) 536
BsiHKAI GWGCWC 1 cut(s) 760
BsiSI CCGG 6 cut(s) 290, 534, 606, 654, 762, 904
BslI CCNNNNNNNGG 2 cut(s) 412, 638
BsmAI GTCTC 3 cut(s) 112, 588, 1127
BsmBI CGTCTC 2 cut(s) 112, 588
BsmI GAATGC 1 cut(s) 788
BsnI GGCC 3 cut(s) 303, 605, 810
Bsp1286I GDGCHC 2 cut(s) 533, 760
Bsp143I GATC 2 cut(s) 487, 910
Bsp1720I GCTNAGC 1 cut(s) 686
BspACI CCGC 6 cut(s) 94, 192, 213, 428, 456, 930
BspANI GGCC 3 cut(s) 303, 605, 810
BspCNI CTCAG 1 cut(s) 699
BspLI GGNNCC 3 cut(s) 294, 532, 538
BspPI GGATC 1 cut(s) 482
BspQI GCTCTTC 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 536
BsrDI GCAATG 3 cut(s) 331, 548, 673
BsrFI RCCGGY 1 cut(s) 605
BsrI ACTGG 1 cut(s) 1007
BssAI RCCGGY 1 cut(s) 605
BssMI GATC 2 cut(s) 487, 910
BssNAI GTATAC 1 cut(s) 661
Bst1107I GTATAC 1 cut(s) 661
Bst2UI CCWGG 1 cut(s) 598
Bst4CI ACNGT 2 cut(s) 31, 541
Bst6I CTCTTC 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 332
BstDEI CTNAG 2 cut(s) 111, 686
BstF5I GGATG 6 cut(s) 90, 266, 285, 751, 953, 1112
BstHHI GCGC 2 cut(s) 72, 1023
BstKTI GATC 2 cut(s) 490, 913
BstMAI GTCTC 3 cut(s) 112, 588, 1127
BstMBI GATC 2 cut(s) 487, 910
BstMWI GCNNNNNNNGC 4 cut(s) 67, 102, 528, 859
BstNI CCWGG 1 cut(s) 598
BstNSI RCATGY 1 cut(s) 790
BstSCI CCNGG 5 cut(s) 288, 596, 652, 760, 903
BstV1I GCAGC 4 cut(s) 29, 32, 937, 1005
BstV2I GAAGAC 1 cut(s) 51
BstZ17I GTATAC 1 cut(s) 661
BsuRI GGCC 3 cut(s) 303, 605, 810
BtsCI GGATG 6 cut(s) 90, 266, 285, 751, 953, 1112
Cac8I GCNNGC 1 cut(s) 332
CfoI GCGC 2 cut(s) 72, 1023
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 2 cut(s) 292, 603
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 537, 901
CviAII CATG 2 cut(s) 787, 1024
CviQI GTAC 2 cut(s) 537, 901
DdeI CTNAG 2 cut(s) 111, 686
DpnI GATC 2 cut(s) 489, 912
DpnII GATC 2 cut(s) 487, 910
DraIII CACNNNGTG 1 cut(s) 1079
EaeI YGGCCR 1 cut(s) 808
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
EciI GGCGGA 2 cut(s) 181, 417
Eco147I AGGCCT 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 533
Eco47I GGWCC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 596
EcoT22I ATGCAT 1 cut(s) 788
EcoT38I GRGCYC 1 cut(s) 533
Esp3I CGTCTC 2 cut(s) 112, 588
FaeI CATG 2 cut(s) 790, 1027
FatI CATG 2 cut(s) 786, 1023
FauI CCCGC 2 cut(s) 463, 937
FauNDI CATATG 1 cut(s) 621
FblI GTMKAC 2 cut(s) 614, 660
Fnu4HI GCNGC 4 cut(s) 18, 21, 951, 1019
FokI GGATG 6 cut(s) 77, 253, 272, 758, 940, 1119
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 4 cut(s) 18, 21, 951, 1019
FspBI CTAG 1 cut(s) 402
FspI TGCGCA 1 cut(s) 1022
GlaI GCGC 2 cut(s) 71, 1022
GluI GCNGC 4 cut(s) 18, 21, 951, 1019
GsaI CCCAGC 2 cut(s) 375, 755
GsuI CTGGAG 4 cut(s) 290, 578, 619, 884
HaeIII GGCC 3 cut(s) 303, 605, 810
HapII CCGG 6 cut(s) 290, 534, 606, 654, 762, 904
HgaI GACGC 1 cut(s) 94
HhaI GCGC 2 cut(s) 72, 1023
Hin1II CATG 2 cut(s) 790, 1027
Hin6I GCGC 2 cut(s) 70, 1021
HinP1I GCGC 2 cut(s) 70, 1021
HindIII AAGCTT 2 cut(s) 113, 851
HinfI GANTC 7 cut(s) 152, 310, 408, 611, 676, 800, 1003
HpaII CCGG 6 cut(s) 290, 534, 606, 654, 762, 904
HphI GGTGA 1 cut(s) 620
Hpy166II GTNNAC 3 cut(s) 615, 661, 709
Hpy188I TCNGA 2 cut(s) 167, 415
Hpy188III TCNNGA 5 cut(s) 202, 307, 466, 557, 977
Hpy8I GTNNAC 3 cut(s) 615, 661, 709
HpyAV CCTTC 8 cut(s) 205, 254, 501, 555, 719, 772, 868, 1104
HpyCH4III ACNGT 2 cut(s) 31, 541
HpyCH4IV ACGT 1 cut(s) 692
HpyCH4V TGCA 8 cut(s) 4, 324, 553, 666, 786, 817, 953, 983
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 102, 528, 859
HpyF3I CTNAG 2 cut(s) 111, 686
HpySE526I ACGT 1 cut(s) 692
Hsp92II CATG 2 cut(s) 790, 1027
HspAI GCGC 2 cut(s) 70, 1021
KpnI GGTACC 1 cut(s) 540
Kzo9I GATC 2 cut(s) 487, 910
LguI GCTCTTC 1 cut(s) 429
LmnI GCTCC 2 cut(s) 536, 763
Lsp1109I GCAGC 4 cut(s) 29, 32, 937, 1005
LweI GCATC 5 cut(s) 562, 826, 962, 970, 1105
MaeI CTAG 1 cut(s) 402
MaeII ACGT 1 cut(s) 692
MaeIII GTNAC 1 cut(s) 35
MalI GATC 2 cut(s) 489, 912
MboI GATC 2 cut(s) 487, 910
MboII GAAGA 4 cut(s) 56, 190, 305, 416
MfeI CAATTG 1 cut(s) 636
MhlI GDGCHC 2 cut(s) 533, 760
MluCI AATT 8 cut(s) 143, 182, 230, 280, 359, 377, 417, 636
MlyI GAGTC 3 cut(s) 146, 620, 809
MmeI TCCRAC 1 cut(s) 1084
Mph1103I ATGCAT 1 cut(s) 788
MseI TTAA 2 cut(s) 180, 915
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 6 cut(s) 290, 534, 606, 654, 762, 904
MspR9I CCNGG 5 cut(s) 290, 598, 654, 762, 905
MunI CAATTG 1 cut(s) 636
Mva1269I GAATGC 1 cut(s) 788
MvaI CCWGG 1 cut(s) 598
MwoI GCNNNNNNNGC 4 cut(s) 67, 102, 528, 859
NciI CCSGG 4 cut(s) 290, 654, 762, 905
NdeI CATATG 1 cut(s) 621
NdeII GATC 2 cut(s) 487, 910
NlaIII CATG 2 cut(s) 790, 1027
NlaIV GGNNCC 3 cut(s) 294, 532, 538
NmuCI GTSAC 1 cut(s) 35
NsbI TGCGCA 1 cut(s) 1022
NsiI ATGCAT 1 cut(s) 788
NspI RCATGY 1 cut(s) 790
PceI AGGCCT 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 429
PctI GAATGC 1 cut(s) 788
PfeI GAWTC 4 cut(s) 310, 408, 676, 1003
PflMI CCANNNNNTGG 1 cut(s) 638
PfoI TCCNGGA 1 cut(s) 288
PkrI GCNGC 4 cut(s) 19, 22, 952, 1020
PleI GAGTC 3 cut(s) 146, 619, 808
PpsI GAGTC 3 cut(s) 146, 619, 808
PsiI TTATAA 2 cut(s) 510, 1032
Psp6I CCWGG 1 cut(s) 596
PspFI CCCAGC 2 cut(s) 371, 751
PspGI CCWGG 1 cut(s) 596
PspN4I GGNNCC 3 cut(s) 294, 532, 538
PspPI GGNCC 2 cut(s) 292, 603
RsaI GTAC 2 cut(s) 538, 902
RsaNI GTAC 2 cut(s) 537, 901
RseI CAYNNNNRTG 1 cut(s) 510
SapI GCTCTTC 1 cut(s) 429
SaqAI TTAA 2 cut(s) 180, 915
SatI GCNGC 4 cut(s) 18, 21, 951, 1019
Sau3AI GATC 2 cut(s) 487, 910
Sau96I GGNCC 2 cut(s) 292, 603
SchI GAGTC 3 cut(s) 146, 620, 809
ScrFI CCNGG 5 cut(s) 290, 598, 654, 762, 905
SduI GDGCHC 2 cut(s) 533, 760
SfaNI GCATC 5 cut(s) 562, 826, 962, 970, 1105
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 510
SmlI CTYRAG 2 cut(s) 202, 466
SmoI CTYRAG 2 cut(s) 202, 466
Sse9I AATT 8 cut(s) 143, 182, 230, 280, 359, 377, 417, 636
SseBI AGGCCT 1 cut(s) 303
SsiI CCGC 6 cut(s) 94, 192, 213, 428, 456, 930
SspMI CTAG 1 cut(s) 402
StuI AGGCCT 1 cut(s) 303
StyD4I CCNGG 5 cut(s) 288, 596, 652, 760, 903
TaaI ACNGT 2 cut(s) 31, 541
TaiI ACGT 1 cut(s) 695
TaqI TCGA 1 cut(s) 592
TasI AATT 8 cut(s) 143, 182, 230, 280, 359, 377, 417, 636
TfiI GAWTC 4 cut(s) 310, 408, 676, 1003
Tru1I TTAA 2 cut(s) 180, 915
Tru9I TTAA 2 cut(s) 180, 915
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 4 cut(s) 17, 20, 950, 1018
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 8 cut(s) 223, 274, 494, 537, 668, 738, 1027, 1078
Van91I CCANNNNNTGG 1 cut(s) 638
VpaK11BI GGWCC 1 cut(s) 292
XapI RAATTY 4 cut(s) 143, 182, 359, 377
XceI RCATGY 1 cut(s) 790
XmiI GTMKAC 2 cut(s) 614, 660
XspI CTAG 1 cut(s) 402
Zsp2I ATGCAT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.