Pre-mRNA-splicing factor ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AAA_22 | PF13401 | 103 - 237 | 2.8e-06 | AAA domain |
| WHD_HA2 | PF04408 | 480 - 506 | 2.7e-09 | Helicase associated domain (HA2), winged-helix |
| HA2_C | PF21010 | 507 - 570 | 2.7e-09 | Helicase associated domain (HA2), ratchet-like |
| OB_NTP_bind | PF07717 | 628 - 705 | 1.8e-12 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1722 |
| AccB1I | GGYRCC | 1 cut(s) | 1758 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2035 |
| AccBSI | CCGCTC | 1 cut(s) | 172 |
| AccI | GTMKAC | 1 cut(s) | 1140 |
| AccII | CGCG | 1 cut(s) | 1739 |
| AccIII | TCCGGA | 1 cut(s) | 1633 |
| AciI | CCGC | 6 cut(s) | 172, 215, 1421, 1505, 1602, 1961 |
| AcoI | YGGCCR | 1 cut(s) | 1109 |
| AcsI | RAATTY | 2 cut(s) | 789, 2080 |
| AcuI | CTGAAG | 2 cut(s) | 1437, 1533 |
| AcvI | CACGTG | 1 cut(s) | 829 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AdeI | CACNNNGTG | 1 cut(s) | 1457 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1233, 2035 |
| AflIII | ACRYGT | 1 cut(s) | 828 |
| AgeI | ACCGGT | 1 cut(s) | 139 |
| AgsI | TTSAA | 6 cut(s) | 518, 651, 676, 896, 1034, 1215 |
| AhlI | ACTAGT | 1 cut(s) | 661 |
| AjnI | CCWGG | 3 cut(s) | 437, 816, 850 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 815, 847 |
| Alw21I | GWGCWC | 3 cut(s) | 33, 416, 1568 |
| Alw26I | GTCTC | 4 cut(s) | 21, 130, 1043, 2056 |
| Alw44I | GTGCAC | 1 cut(s) | 412 |
| Ama87I | CYCGRG | 1 cut(s) | 1144 |
| Aor13HI | TCCGGA | 1 cut(s) | 1633 |
| AoxI | GGCC | 2 cut(s) | 630, 1109 |
| ApaLI | GTGCAC | 1 cut(s) | 412 |
| ApeKI | GCWGC | 6 cut(s) | 446, 449, 965, 979, 1825, 1927 |
| ApoI | RAATTY | 2 cut(s) | 789, 2080 |
| AsiGI | ACCGGT | 1 cut(s) | 139 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 68, 157, 646 |
| AspS9I | GGNCC | 7 cut(s) | 197, 631, 823, 1402, 1785, 1813, 2038 |
| AsuHPI | GGTGA | 7 cut(s) | 102, 153, 154, 806, 1487, 1505, 1619 |
| AsuII | TTCGAA | 1 cut(s) | 787 |
| AvaI | CYCGRG | 1 cut(s) | 1144 |
| AvaII | GGWCC | 6 cut(s) | 197, 823, 1402, 1785, 1813, 2038 |
| BaeGI | GKGCMC | 1 cut(s) | 416 |
| BanI | GGYRCC | 1 cut(s) | 1758 |
| BbrPI | CACGTG | 1 cut(s) | 829 |
| Bbv12I | GWGCWC | 3 cut(s) | 33, 416, 1568 |
| BbvI | GCAGC | 6 cut(s) | 433, 436, 977, 991, 1812, 1914 |
| BccI | CCATC | 6 cut(s) | 554, 613, 697, 949, 1180, 1495 |
| BciT130I | CCWGG | 3 cut(s) | 439, 818, 852 |
| BclI | TGATCA | 4 cut(s) | 811, 1171, 1285, 1609 |
| BcoDI | GTCTC | 4 cut(s) | 21, 130, 1043, 2056 |
| BcuI | ACTAGT | 1 cut(s) | 661 |
| BfaI | CTAG | 7 cut(s) | 453, 482, 662, 693, 773, 1298, 1367 |
| BfmI | CTRYAG | 3 cut(s) | 607, 1928, 1984 |
| BisI | GCNGC | 7 cut(s) | 447, 450, 966, 980, 1826, 1928, 1961 |
| BlsI | GCNGC | 7 cut(s) | 448, 451, 967, 981, 1827, 1929, 1962 |
| Bme1390I | CCNGG | 3 cut(s) | 439, 818, 852 |
| Bme18I | GGWCC | 6 cut(s) | 197, 823, 1402, 1785, 1813, 2038 |
| BmeT110I | CYCGRG | 1 cut(s) | 1144 |
| BmgT120I | GGNCC | 7 cut(s) | 197, 631, 823, 1402, 1785, 1813, 2038 |
| BmiI | GGNNCC | 5 cut(s) | 219, 912, 1404, 1760, 1814 |
| BmrFI | CCNGG | 3 cut(s) | 439, 818, 852 |
| BmrI | ACTGGG | 1 cut(s) | 1747 |
| BmsI | GCATC | 6 cut(s) | 583, 1229, 1372, 1442, 1510, 1642 |
| BmuI | ACTGGG | 1 cut(s) | 1747 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1841, 1873 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1232 |
| Bpu14I | TTCGAA | 1 cut(s) | 787 |
| BpuEI | CTTGAG | 3 cut(s) | 447, 1697, 1841 |
| BsaAI | YACGTR | 1 cut(s) | 829 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 2 cut(s) | 130, 1043 |
| BsaWI | WCCGGW | 2 cut(s) | 139, 1633 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1233, 2035 |
| Bse118I | RCCGGY | 2 cut(s) | 139, 1604 |
| Bse1I | ACTGG | 4 cut(s) | 343, 1753, 1949, 2001 |
| Bse3DI | GCAATG | 3 cut(s) | 1288, 1530, 1701 |
| BseAI | TCCGGA | 1 cut(s) | 1633 |
| BseBI | CCWGG | 3 cut(s) | 439, 818, 852 |
| BseGI | GGATG | 4 cut(s) | 877, 1506, 1525, 1630 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1233, 2035 |
| BseMI | GCAATG | 3 cut(s) | 1288, 1530, 1701 |
| BseMII | CTCAG | 3 cut(s) | 785, 1476, 1761 |
| BseNI | ACTGG | 4 cut(s) | 343, 1753, 1949, 2001 |
| BseSI | GKGCMC | 1 cut(s) | 416 |
| BseXI | GCAGC | 6 cut(s) | 433, 436, 977, 991, 1812, 1914 |
| BseYI | CCCAGC | 1 cut(s) | 1121 |
| Bsh1236I | CGCG | 1 cut(s) | 1739 |
| Bsh1285I | CGRYCG | 1 cut(s) | 176 |
| BshFI | GGCC | 2 cut(s) | 632, 1111 |
| BshNI | GGYRCC | 1 cut(s) | 1758 |
| BshTI | ACCGGT | 1 cut(s) | 139 |
| BsiEI | CGRYCG | 1 cut(s) | 176 |
| BsiHKAI | GWGCWC | 3 cut(s) | 33, 416, 1568 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1144 |
| BsiSI | CCGG | 4 cut(s) | 42, 140, 1605, 1634 |
| BslFI | GGGAC | 1 cut(s) | 1826 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1233, 2035 |
| BsmAI | GTCTC | 4 cut(s) | 21, 130, 1043, 2056 |
| BsmBI | CGTCTC | 1 cut(s) | 21 |
| BsmFI | GGGAC | 1 cut(s) | 1826 |
| BsmI | GAATGC | 2 cut(s) | 1674, 2010 |
| BsnI | GGCC | 2 cut(s) | 632, 1111 |
| Bso31I | GGTCTC | 2 cut(s) | 130, 1043 |
| BsoBI | CYCGRG | 1 cut(s) | 1144 |
| Bsp119I | TTCGAA | 1 cut(s) | 787 |
| Bsp1286I | GDGCHC | 3 cut(s) | 33, 416, 1568 |
| Bsp13I | TCCGGA | 1 cut(s) | 1633 |
| Bsp143I | GATC | 8 cut(s) | 811, 943, 1171, 1285, 1552, 1609, 1696, 1988 |
| BspACI | CCGC | 6 cut(s) | 172, 215, 1421, 1505, 1602, 1961 |
| BspANI | GGCC | 2 cut(s) | 632, 1111 |
| BspCNI | CTCAG | 3 cut(s) | 786, 1477, 1760 |
| BspEI | TCCGGA | 1 cut(s) | 1633 |
| BspFNI | CGCG | 1 cut(s) | 1739 |
| BspHI | TCATGA | 1 cut(s) | 1612 |
| BspLI | GGNNCC | 5 cut(s) | 219, 912, 1404, 1760, 1814 |
| BspMAI | CTGCAG | 1 cut(s) | 1932 |
| BspT104I | TTCGAA | 1 cut(s) | 787 |
| BspT107I | GGYRCC | 1 cut(s) | 1758 |
| BspTNI | GGTCTC | 2 cut(s) | 130, 1043 |
| BsrBI | CCGCTC | 1 cut(s) | 172 |
| BsrDI | GCAATG | 3 cut(s) | 1288, 1530, 1701 |
| BsrFI | RCCGGY | 2 cut(s) | 139, 1604 |
| BsrI | ACTGG | 4 cut(s) | 343, 1753, 1949, 2001 |
| BssAI | RCCGGY | 2 cut(s) | 139, 1604 |
| BssMI | GATC | 8 cut(s) | 811, 943, 1171, 1285, 1552, 1609, 1696, 1988 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| Bst2UI | CCWGG | 3 cut(s) | 439, 818, 852 |
| Bst4CI | ACNGT | 2 cut(s) | 69, 541 |
| Bst6I | CTCTTC | 2 cut(s) | 945, 1362 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1457 |
| BstBAI | YACGTR | 1 cut(s) | 829 |
| BstBI | TTCGAA | 1 cut(s) | 787 |
| BstC8I | GCNNGC | 2 cut(s) | 191, 1023 |
| BstDEI | CTNAG | 5 cut(s) | 794, 1232, 1485, 1533, 1747 |
| BstF5I | GGATG | 4 cut(s) | 877, 1506, 1525, 1630 |
| BstFNI | CGCG | 1 cut(s) | 1739 |
| BstKTI | GATC | 8 cut(s) | 814, 946, 1174, 1288, 1555, 1612, 1699, 1991 |
| BstMAI | GTCTC | 4 cut(s) | 21, 130, 1043, 2056 |
| BstMBI | GATC | 8 cut(s) | 811, 943, 1171, 1285, 1552, 1609, 1696, 1988 |
| BstMCI | CGRYCG | 1 cut(s) | 176 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 443, 988, 1027, 1457, 1544, 1661, 1919 |
| BstNI | CCWGG | 3 cut(s) | 439, 818, 852 |
| BstNSI | RCATGY | 1 cut(s) | 1021 |
| BstSCI | CCNGG | 3 cut(s) | 437, 816, 850 |
| BstSFI | CTRYAG | 3 cut(s) | 607, 1928, 1984 |
| BstSLI | GKGCMC | 1 cut(s) | 416 |
| BstUI | CGCG | 1 cut(s) | 1739 |
| BstV1I | GCAGC | 6 cut(s) | 433, 436, 977, 991, 1812, 1914 |
| BsuRI | GGCC | 2 cut(s) | 632, 1111 |
| BtsCI | GGATG | 4 cut(s) | 877, 1506, 1525, 1630 |
| BtsIMutI | CAGTG | 3 cut(s) | 939, 1413, 1760 |
| Cac8I | GCNNGC | 2 cut(s) | 191, 1023 |
| CciI | TCATGA | 1 cut(s) | 1612 |
| Cfr10I | RCCGGY | 2 cut(s) | 139, 1604 |
| Cfr13I | GGNCC | 7 cut(s) | 197, 631, 823, 1402, 1785, 1813, 2038 |
| CseI | GACGC | 1 cut(s) | 1745 |
| CspAI | ACCGGT | 1 cut(s) | 139 |
| DdeI | CTNAG | 5 cut(s) | 794, 1232, 1485, 1533, 1747 |
| DpnI | GATC | 8 cut(s) | 813, 945, 1173, 1287, 1554, 1611, 1698, 1990 |
| DpnII | GATC | 8 cut(s) | 811, 943, 1171, 1285, 1552, 1609, 1696, 1988 |
| DraIII | CACNNNGTG | 1 cut(s) | 1457 |
| EaeI | YGGCCR | 1 cut(s) | 1109 |
| Eam1104I | CTCTTC | 2 cut(s) | 945, 1362 |
| EarI | CTCTTC | 2 cut(s) | 945, 1362 |
| EciI | GGCGGA | 3 cut(s) | 230, 1520, 1591 |
| Eco31I | GGTCTC | 2 cut(s) | 130, 1043 |
| Eco47I | GGWCC | 6 cut(s) | 197, 823, 1402, 1785, 1813, 2038 |
| Eco57I | CTGAAG | 2 cut(s) | 1437, 1533 |
| Eco72I | CACGTG | 1 cut(s) | 829 |
| Eco88I | CYCGRG | 1 cut(s) | 1144 |
| EcoRI | GAATTC | 1 cut(s) | 789 |
| EcoRII | CCWGG | 3 cut(s) | 437, 816, 850 |
| EcoT22I | ATGCAT | 1 cut(s) | 1674 |
| Esp3I | CGTCTC | 1 cut(s) | 21 |
| FaqI | GGGAC | 1 cut(s) | 1826 |
| FauNDI | CATATG | 1 cut(s) | 166 |
| FbaI | TGATCA | 4 cut(s) | 811, 1171, 1285, 1609 |
| FblI | GTMKAC | 1 cut(s) | 1140 |
| Fnu4HI | GCNGC | 7 cut(s) | 447, 450, 966, 980, 1826, 1928, 1961 |
| FokI | GGATG | 4 cut(s) | 884, 1513, 1532, 1617 |
| Fsp4HI | GCNGC | 7 cut(s) | 447, 450, 966, 980, 1826, 1928, 1961 |
| FspBI | CTAG | 7 cut(s) | 453, 482, 662, 693, 773, 1298, 1367 |
| GluI | GCNGC | 7 cut(s) | 447, 450, 966, 980, 1826, 1928, 1961 |
| GsaI | CCCAGC | 1 cut(s) | 1125 |
| HaeIII | GGCC | 2 cut(s) | 632, 1111 |
| HapII | CCGG | 4 cut(s) | 42, 140, 1605, 1634 |
| HgaI | GACGC | 1 cut(s) | 1745 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| HincII | GTYRAC | 1 cut(s) | 1141 |
| HindII | GTYRAC | 1 cut(s) | 1141 |
| HindIII | AAGCTT | 1 cut(s) | 187 |
| HpaII | CCGG | 4 cut(s) | 42, 140, 1605, 1634 |
| HphI | GGTGA | 7 cut(s) | 102, 153, 154, 806, 1487, 1505, 1619 |
| Hpy166II | GTNNAC | 5 cut(s) | 414, 625, 755, 1141, 1496 |
| Hpy188I | TCNGA | 7 cut(s) | 52, 532, 795, 1268, 1552, 2013, 2086 |
| Hpy8I | GTNNAC | 5 cut(s) | 414, 625, 755, 1141, 1496 |
| Hpy99I | CGWCG | 3 cut(s) | 10, 13, 16 |
| HpyAV | CCTTC | 5 cut(s) | 396, 670, 1015, 1066, 1831 |
| HpyCH4III | ACNGT | 2 cut(s) | 69, 541 |
| HpyCH4IV | ACGT | 2 cut(s) | 828, 1327 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 443, 988, 1027, 1457, 1544, 1661, 1919 |
| HpyF3I | CTNAG | 5 cut(s) | 794, 1232, 1485, 1533, 1747 |
| HpySE526I | ACGT | 2 cut(s) | 828, 1327 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Kpn2I | TCCGGA | 1 cut(s) | 1633 |
| Ksp22I | TGATCA | 4 cut(s) | 811, 1171, 1285, 1609 |
| Kzo9I | GATC | 8 cut(s) | 811, 943, 1171, 1285, 1552, 1609, 1696, 1988 |
| LmnI | GCTCC | 2 cut(s) | 217, 2110 |
| Lsp1109I | GCAGC | 6 cut(s) | 433, 436, 977, 991, 1812, 1914 |
| LweI | GCATC | 6 cut(s) | 583, 1229, 1372, 1442, 1510, 1642 |
| MaeI | CTAG | 7 cut(s) | 453, 482, 662, 693, 773, 1298, 1367 |
| MaeII | ACGT | 2 cut(s) | 828, 1327 |
| MaeIII | GTNAC | 1 cut(s) | 2068 |
| MalI | GATC | 8 cut(s) | 813, 945, 1173, 1287, 1554, 1611, 1698, 1990 |
| MbiI | CCGCTC | 1 cut(s) | 172 |
| MboI | GATC | 8 cut(s) | 811, 943, 1171, 1285, 1552, 1609, 1696, 1988 |
| MboII | GAAGA | 5 cut(s) | 194, 530, 962, 1349, 1900 |
| MfeI | CAATTG | 1 cut(s) | 974 |
| MhlI | GDGCHC | 3 cut(s) | 33, 416, 1568 |
| MlyI | GAGTC | 4 cut(s) | 47, 85, 1136, 1199 |
| MmeI | TCCRAC | 2 cut(s) | 646, 2016 |
| Mph1103I | ATGCAT | 1 cut(s) | 1674 |
| MroI | TCCGGA | 1 cut(s) | 1633 |
| MroXI | GAANNNNTTC | 3 cut(s) | 68, 157, 646 |
| MseI | TTAA | 8 cut(s) | 705, 858, 1161, 1196, 1202, 1374, 1463, 2116 |
| MspI | CCGG | 4 cut(s) | 42, 140, 1605, 1634 |
| MspR9I | CCNGG | 3 cut(s) | 439, 818, 852 |
| MunI | CAATTG | 1 cut(s) | 974 |
| Mva1269I | GAATGC | 2 cut(s) | 1674, 2010 |
| MvaI | CCWGG | 3 cut(s) | 439, 818, 852 |
| MvnI | CGCG | 1 cut(s) | 1739 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 443, 988, 1027, 1457, 1544, 1661, 1919 |
| NdeI | CATATG | 1 cut(s) | 166 |
| NdeII | GATC | 8 cut(s) | 811, 943, 1171, 1285, 1552, 1609, 1696, 1988 |
| NlaIV | GGNNCC | 5 cut(s) | 219, 912, 1404, 1760, 1814 |
| NmeAIII | GCCGAG | 1 cut(s) | 1051 |
| NsiI | ATGCAT | 1 cut(s) | 1674 |
| NspI | RCATGY | 1 cut(s) | 1021 |
| NspV | TTCGAA | 1 cut(s) | 787 |
| PagI | TCATGA | 1 cut(s) | 1612 |
| PctI | GAATGC | 2 cut(s) | 1674, 2010 |
| PdmI | GAANNNNTTC | 3 cut(s) | 68, 157, 646 |
| PfeI | GAWTC | 6 cut(s) | 53, 158, 267, 764, 1616, 1969 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2035 |
| PinAI | ACCGGT | 1 cut(s) | 139 |
| PkrI | GCNGC | 7 cut(s) | 448, 451, 967, 981, 1827, 1929, 1962 |
| PleI | GAGTC | 4 cut(s) | 46, 84, 1136, 1198 |
| PmaCI | CACGTG | 1 cut(s) | 829 |
| PmlI | CACGTG | 1 cut(s) | 829 |
| PpsI | GAGTC | 4 cut(s) | 46, 84, 1136, 1198 |
| Ppu21I | YACGTR | 1 cut(s) | 829 |
| PsiI | TTATAA | 1 cut(s) | 1722 |
| Psp6I | CCWGG | 3 cut(s) | 437, 816, 850 |
| PspCI | CACGTG | 1 cut(s) | 829 |
| PspFI | CCCAGC | 1 cut(s) | 1121 |
| PspGI | CCWGG | 3 cut(s) | 437, 816, 850 |
| PspN4I | GGNNCC | 5 cut(s) | 219, 912, 1404, 1760, 1814 |
| PspPI | GGNCC | 7 cut(s) | 197, 631, 823, 1402, 1785, 1813, 2038 |
| PstI | CTGCAG | 1 cut(s) | 1932 |
| SalI | GTCGAC | 1 cut(s) | 1139 |
| SaqAI | TTAA | 8 cut(s) | 705, 858, 1161, 1196, 1202, 1374, 1463, 2116 |
| SatI | GCNGC | 7 cut(s) | 447, 450, 966, 980, 1826, 1928, 1961 |
| Sau3AI | GATC | 8 cut(s) | 811, 943, 1171, 1285, 1552, 1609, 1696, 1988 |
| Sau96I | GGNCC | 7 cut(s) | 197, 631, 823, 1402, 1785, 1813, 2038 |
| SchI | GAGTC | 4 cut(s) | 47, 85, 1136, 1199 |
| ScrFI | CCNGG | 3 cut(s) | 439, 818, 852 |
| SduI | GDGCHC | 3 cut(s) | 33, 416, 1568 |
| SfaNI | GCATC | 6 cut(s) | 583, 1229, 1372, 1442, 1510, 1642 |
| SfcI | CTRYAG | 3 cut(s) | 607, 1928, 1984 |
| SfuI | TTCGAA | 1 cut(s) | 787 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1604 |
| SinI | GGWCC | 6 cut(s) | 197, 823, 1402, 1785, 1813, 2038 |
| SmlI | CTYRAG | 3 cut(s) | 462, 1712, 1820 |
| SmoI | CTYRAG | 3 cut(s) | 462, 1712, 1820 |
| SpeI | ACTAGT | 1 cut(s) | 661 |
| SsiI | CCGC | 6 cut(s) | 172, 215, 1421, 1505, 1602, 1961 |
| SspMI | CTAG | 7 cut(s) | 453, 482, 662, 693, 773, 1298, 1367 |
| StyD4I | CCNGG | 3 cut(s) | 437, 816, 850 |
| TaaI | ACNGT | 2 cut(s) | 69, 541 |
| TaiI | ACGT | 2 cut(s) | 831, 1330 |
| TaqI | TCGA | 6 cut(s) | 780, 787, 839, 946, 1140, 2043 |
| TaqII | GACCGA | 1 cut(s) | 185 |
| TauI | GCSGC | 1 cut(s) | 1963 |
| TfiI | GAWTC | 6 cut(s) | 53, 158, 267, 764, 1616, 1969 |
| Tru1I | TTAA | 8 cut(s) | 705, 858, 1161, 1196, 1202, 1374, 1463, 2116 |
| Tru9I | TTAA | 8 cut(s) | 705, 858, 1161, 1196, 1202, 1374, 1463, 2116 |
| TscAI | CASTG | 3 cut(s) | 946, 1420, 1760 |
| TseI | GCWGC | 6 cut(s) | 446, 449, 965, 979, 1825, 1927 |
| TspDTI | ATGAA | 8 cut(s) | 138, 872, 1026, 1290, 1616, 1740, 1779, 1805 |
| TspGWI | ACGGA | 3 cut(s) | 1513, 1609, 2087 |
| TspRI | CASTG | 3 cut(s) | 946, 1420, 1760 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2035 |
| VneI | GTGCAC | 1 cut(s) | 412 |
| VpaK11BI | GGWCC | 6 cut(s) | 197, 823, 1402, 1785, 1813, 2038 |
| XapI | RAATTY | 2 cut(s) | 789, 2080 |
| XbaI | TCTAGA | 2 cut(s) | 692, 1297 |
| XceI | RCATGY | 1 cut(s) | 1021 |
| XmiI | GTMKAC | 1 cut(s) | 1140 |
| XmnI | GAANNNNTTC | 3 cut(s) | 68, 157, 646 |
| XspI | CTAG | 7 cut(s) | 453, 482, 662, 693, 773, 1298, 1367 |
| Zsp2I | ATGCAT | 1 cut(s) | 1674 |