Pre-mRNA-splicing factor ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DEAD | PF00270 | 363 - 514 | 2.5e-07 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 562 - 688 | 5.3e-12 | Helicase conserved C-terminal domain |
| WHD_HA2 | PF04408 | 750 - 778 | 4.6e-11 | Helicase associated domain (HA2), winged-helix |
| HA2_C | PF21010 | 779 - 840 | 8.9e-10 | Helicase associated domain (HA2), ratchet-like |
| OB_NTP_bind | PF07717 | 898 - 975 | 7.4e-23 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2236 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2456 |
| Acc36I | ACCTGC | 2 cut(s) | 2033, 2236 |
| AccBSI | CCGCTC | 1 cut(s) | 2635 |
| AccI | GTMKAC | 2 cut(s) | 693, 2311 |
| AccII | CGCG | 2 cut(s) | 1234, 1239 |
| AciI | CCGC | 5 cut(s) | 1232, 1234, 1244, 2635, 2918 |
| AclWI | GGATC | 7 cut(s) | 837, 1937, 2195, 2213, 2226, 2330, 2343 |
| AcoI | YGGCCR | 2 cut(s) | 120, 1138 |
| AcsI | RAATTY | 3 cut(s) | 394, 1550, 2482 |
| AcuI | CTGAAG | 4 cut(s) | 41, 366, 2253, 2349 |
| AcvI | CACGTG | 1 cut(s) | 1684 |
| AcyI | GRCGYC | 3 cut(s) | 176, 761, 2024 |
| AfaI | GTAC | 5 cut(s) | 1079, 1196, 1358, 1669, 2394 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1152, 1985, 2801, 2802, 2935 |
| AgeI | ACCGGT | 1 cut(s) | 1145 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1773 |
| AjiI | CACGTC | 1 cut(s) | 27 |
| AjnI | CCWGG | 6 cut(s) | 1050, 1262, 1591, 1696, 1948, 2065 |
| AleI | CACNNNNGTG | 1 cut(s) | 2566 |
| Alw21I | GWGCWC | 4 cut(s) | 805, 1226, 2384, 2664 |
| Alw26I | GTCTC | 4 cut(s) | 37, 529, 1507, 2540 |
| Alw44I | GTGCAC | 2 cut(s) | 801, 1222 |
| AlwI | GGATC | 7 cut(s) | 837, 1937, 2195, 2213, 2226, 2330, 2343 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1180, 1640 |
| Ama87I | CYCGRG | 1 cut(s) | 2970 |
| AoxI | GGCC | 4 cut(s) | 120, 1138, 1842, 2062 |
| ApaLI | GTGCAC | 2 cut(s) | 801, 1222 |
| ApeKI | GCWGC | 7 cut(s) | 416, 766, 1259, 1655, 1837, 2200, 2405 |
| ApoI | RAATTY | 3 cut(s) | 394, 1550, 2482 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2539, 2571 |
| AsiGI | ACCGGT | 1 cut(s) | 1145 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 502 |
| AspA2I | CCTAGG | 1 cut(s) | 248 |
| AspLEI | GCGC | 2 cut(s) | 1089, 1239 |
| AspS9I | GGNCC | 3 cut(s) | 156, 2063, 2848 |
| AsuC2I | CCSGG | 1 cut(s) | 1495 |
| AsuHPI | GGTGA | 7 cut(s) | 337, 824, 899, 1492, 2303, 2656, 2845 |
| AvaI | CYCGRG | 1 cut(s) | 2970 |
| AvaII | GGWCC | 2 cut(s) | 156, 2848 |
| AvrII | CCTAGG | 1 cut(s) | 248 |
| AxyI | CCTNAGG | 1 cut(s) | 1866 |
| BaeGI | GKGCMC | 3 cut(s) | 805, 1226, 2278 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1160, 1193 |
| BalI | TGGCCA | 1 cut(s) | 1140 |
| BamHI | GGATCC | 2 cut(s) | 2218, 2335 |
| BanII | GRGCYC | 1 cut(s) | 2664 |
| BauI | CACGAG | 1 cut(s) | 1442 |
| BbrPI | CACGTG | 1 cut(s) | 1684 |
| BbsI | GAAGAC | 3 cut(s) | 29, 1349, 1609 |
| Bbv12I | GWGCWC | 4 cut(s) | 805, 1226, 2384, 2664 |
| BbvI | GCAGC | 7 cut(s) | 428, 778, 1246, 1667, 1824, 2187, 2392 |
| BceAI | ACGGC | 1 cut(s) | 189 |
| BciT130I | CCWGG | 6 cut(s) | 1052, 1264, 1593, 1698, 1950, 2067 |
| BclI | TGATCA | 2 cut(s) | 475, 2623 |
| BcnI | CCSGG | 1 cut(s) | 1495 |
| BcoDI | GTCTC | 4 cut(s) | 37, 529, 1507, 2540 |
| BfaI | CTAG | 8 cut(s) | 140, 249, 1527, 1778, 1830, 1875, 2270, 2733 |
| BfmI | CTRYAG | 4 cut(s) | 1414, 1838, 2077, 2676 |
| BfuAI | ACCTGC | 2 cut(s) | 2033, 2236 |
| BlnI | CCTAGG | 1 cut(s) | 248 |
| BlpI | GCTNAGC | 1 cut(s) | 1794 |
| Bme1390I | CCNGG | 7 cut(s) | 1052, 1264, 1495, 1593, 1698, 1950, 2067 |
| Bme18I | GGWCC | 2 cut(s) | 156, 2848 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1773 |
| BmeT110I | CYCGRG | 1 cut(s) | 2970 |
| BmgBI | CACGTC | 1 cut(s) | 27 |
| BmgT120I | GGNCC | 3 cut(s) | 156, 2063, 2848 |
| BmiI | GGNNCC | 2 cut(s) | 2220, 2337 |
| BmrFI | CCNGG | 7 cut(s) | 1052, 1264, 1495, 1593, 1698, 1950, 2067 |
| BmrI | ACTGGG | 1 cut(s) | 2790 |
| BmsI | GCATC | 6 cut(s) | 126, 227, 697, 1531, 1642, 2955 |
| BmuI | ACTGGG | 1 cut(s) | 2790 |
| BoxI | GACNNNNGTC | 1 cut(s) | 29 |
| BpiI | GAAGAC | 3 cut(s) | 29, 1349, 1609 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2651, 2683 |
| BpmI | CTGGAG | 3 cut(s) | 407, 1034, 1719 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1794 |
| BpuEI | CTTGAG | 3 cut(s) | 591, 1257, 2651 |
| BpuMI | CCSGG | 1 cut(s) | 1495 |
| Bsa29I | ATCGAT | 1 cut(s) | 1923 |
| BsaAI | YACGTR | 1 cut(s) | 1684 |
| BsaHI | GRCGYC | 3 cut(s) | 176, 761, 2024 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaWI | WCCGGW | 2 cut(s) | 696, 1145 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 871, 901 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1152, 1985, 2801, 2802, 2935 |
| Bse118I | RCCGGY | 3 cut(s) | 118, 122, 1145 |
| Bse1I | ACTGG | 5 cut(s) | 390, 1726, 2065, 2425, 2796 |
| Bse21I | CCTNAGG | 1 cut(s) | 1866 |
| Bse3DI | GCAATG | 7 cut(s) | 655, 1254, 1488, 1899, 1997, 2503, 2516 |
| BseBI | CCWGG | 6 cut(s) | 1052, 1264, 1593, 1698, 1950, 2067 |
| BseCI | ATCGAT | 1 cut(s) | 1923 |
| BseGI | GGATG | 7 cut(s) | 553, 682, 784, 1210, 1657, 1995, 2944 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1152, 1985, 2801, 2802, 2935 |
| BseMI | GCAATG | 7 cut(s) | 655, 1254, 1488, 1899, 1997, 2503, 2516 |
| BseMII | CTCAG | 8 cut(s) | 1329, 1502, 1536, 1785, 1857, 2082, 2313, 2397 |
| BseNI | ACTGG | 5 cut(s) | 390, 1726, 2065, 2425, 2796 |
| BseRI | GAGGAG | 4 cut(s) | 1070, 1075, 1996, 2402 |
| BseSI | GKGCMC | 3 cut(s) | 805, 1226, 2278 |
| BseX3I | CGGCCG | 1 cut(s) | 120 |
| BseXI | GCAGC | 7 cut(s) | 428, 778, 1246, 1667, 1824, 2187, 2392 |
| BsgI | GTGCAG | 1 cut(s) | 2186 |
| Bsh1236I | CGCG | 2 cut(s) | 1234, 1239 |
| Bsh1285I | CGRYCG | 2 cut(s) | 123, 2358 |
| BshFI | GGCC | 4 cut(s) | 122, 1140, 1844, 2064 |
| BshTI | ACCGGT | 1 cut(s) | 1145 |
| BshVI | ATCGAT | 1 cut(s) | 1923 |
| BsiEI | CGRYCG | 2 cut(s) | 123, 2358 |
| BsiHKAI | GWGCWC | 4 cut(s) | 805, 1226, 2384, 2664 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2970 |
| BsiSI | CCGG | 5 cut(s) | 119, 123, 697, 1146, 1495 |
| BslFI | GGGAC | 3 cut(s) | 1574, 1794, 1795 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1152, 1985, 2801, 2802, 2935 |
| BsmAI | GTCTC | 4 cut(s) | 37, 529, 1507, 2540 |
| BsmFI | GGGAC | 3 cut(s) | 1574, 1794, 1795 |
| BsnI | GGCC | 4 cut(s) | 122, 1140, 1844, 2064 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| BsoBI | CYCGRG | 1 cut(s) | 2970 |
| Bsp1286I | GDGCHC | 5 cut(s) | 805, 1226, 2278, 2384, 2664 |
| Bsp1407I | TGTACA | 1 cut(s) | 1077 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1794 |
| Bsp19I | CCATGG | 1 cut(s) | 1038 |
| BspACI | CCGC | 5 cut(s) | 1232, 1234, 1244, 2635, 2918 |
| BspANI | GGCC | 4 cut(s) | 122, 1140, 1844, 2064 |
| BspCNI | CTCAG | 8 cut(s) | 1330, 1503, 1537, 1786, 1858, 2083, 2314, 2396 |
| BspDI | ATCGAT | 1 cut(s) | 1923 |
| BspFNI | CGCG | 2 cut(s) | 1234, 1239 |
| BspHI | TCATGA | 3 cut(s) | 478, 1603, 2839 |
| BspLI | GGNNCC | 2 cut(s) | 2220, 2337 |
| BspMAI | CTGCAG | 1 cut(s) | 1842 |
| BspMI | ACCTGC | 2 cut(s) | 2033, 2236 |
| BspPI | GGATC | 7 cut(s) | 837, 1937, 2195, 2213, 2226, 2330, 2343 |
| BspQI | GCTCTTC | 1 cut(s) | 2171 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrBI | CCGCTC | 1 cut(s) | 2635 |
| BsrDI | GCAATG | 7 cut(s) | 655, 1254, 1488, 1899, 1997, 2503, 2516 |
| BsrFI | RCCGGY | 3 cut(s) | 118, 122, 1145 |
| BsrGI | TGTACA | 1 cut(s) | 1077 |
| BsrI | ACTGG | 5 cut(s) | 390, 1726, 2065, 2425, 2796 |
| BssAI | RCCGGY | 3 cut(s) | 118, 122, 1145 |
| BssNI | GRCGYC | 3 cut(s) | 176, 761, 2024 |
| BssSI | CACGAG | 1 cut(s) | 1442 |
| BssT1I | CCWWGG | 3 cut(s) | 248, 1038, 2182 |
| Bst2BI | CACGAG | 1 cut(s) | 1442 |
| Bst2UI | CCWGG | 6 cut(s) | 1052, 1264, 1593, 1698, 1950, 2067 |
| Bst4CI | ACNGT | 5 cut(s) | 1176, 1348, 2259, 2764, 2782 |
| Bst6I | CTCTTC | 4 cut(s) | 309, 351, 740, 2171 |
| BstACI | GRCGYC | 3 cut(s) | 176, 761, 2024 |
| BstAUI | TGTACA | 1 cut(s) | 1077 |
| BstBAI | YACGTR | 1 cut(s) | 1684 |
| BstC8I | GCNNGC | 7 cut(s) | 120, 124, 494, 1411, 1842, 2808, 2985 |
| BstDSI | CCRYGG | 3 cut(s) | 756, 1038, 1232 |
| BstF5I | GGATG | 7 cut(s) | 553, 682, 784, 1210, 1657, 1995, 2944 |
| BstFNI | CGCG | 2 cut(s) | 1234, 1239 |
| BstHHI | GCGC | 2 cut(s) | 1089, 1239 |
| BstMAI | GTCTC | 4 cut(s) | 37, 529, 1507, 2540 |
| BstMCI | CGRYCG | 2 cut(s) | 123, 2358 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 182, 1034, 1637, 1834, 2273, 2360, 2471, 2635 |
| BstNI | CCWGG | 6 cut(s) | 1052, 1264, 1593, 1698, 1950, 2067 |
| BstNSI | RCATGY | 2 cut(s) | 809, 1375 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 29 |
| BstSCI | CCNGG | 7 cut(s) | 1050, 1262, 1493, 1591, 1696, 1948, 2065 |
| BstSFI | CTRYAG | 4 cut(s) | 1414, 1838, 2077, 2676 |
| BstSLI | GKGCMC | 3 cut(s) | 805, 1226, 2278 |
| BstUI | CGCG | 2 cut(s) | 1234, 1239 |
| BstV1I | GCAGC | 7 cut(s) | 428, 778, 1246, 1667, 1824, 2187, 2392 |
| BstV2I | GAAGAC | 3 cut(s) | 29, 1349, 1609 |
| BstX2I | RGATCY | 2 cut(s) | 2218, 2335 |
| BstYI | RGATCY | 2 cut(s) | 2218, 2335 |
| BstZI | CGGCCG | 1 cut(s) | 120 |
| Bsu15I | ATCGAT | 1 cut(s) | 1923 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1866 |
| BsuRI | GGCC | 4 cut(s) | 122, 1140, 1844, 2064 |
| BsuTUI | ATCGAT | 1 cut(s) | 1923 |
| BtgI | CCRYGG | 3 cut(s) | 756, 1038, 1232 |
| BtgZI | GCGATG | 2 cut(s) | 76, 300 |
| BtrI | CACGTC | 1 cut(s) | 27 |
| BtsCI | GGATG | 7 cut(s) | 553, 682, 784, 1210, 1657, 1995, 2944 |
| BtsIMutI | CAGTG | 4 cut(s) | 1561, 2237, 2418, 2769 |
| BveI | ACCTGC | 2 cut(s) | 2033, 2236 |
| Cac8I | GCNNGC | 7 cut(s) | 120, 124, 494, 1411, 1842, 2808, 2985 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1180, 1640 |
| CciI | TCATGA | 3 cut(s) | 478, 1603, 2839 |
| CfoI | GCGC | 2 cut(s) | 1089, 1239 |
| Cfr10I | RCCGGY | 3 cut(s) | 118, 122, 1145 |
| Cfr13I | GGNCC | 3 cut(s) | 156, 2063, 2848 |
| Cfr42I | CCGCGG | 1 cut(s) | 1235 |
| ClaI | ATCGAT | 1 cut(s) | 1923 |
| CseI | GACGC | 3 cut(s) | 165, 750, 2013 |
| Csp6I | GTAC | 5 cut(s) | 1078, 1195, 1357, 1668, 2393 |
| CspAI | ACCGGT | 1 cut(s) | 1145 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1882, 1917 |
| CviQI | GTAC | 5 cut(s) | 1078, 1195, 1357, 1668, 2393 |
| DraI | TTTAAA | 2 cut(s) | 399, 2104 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2456 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1773 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2456 |
| EaeI | YGGCCR | 2 cut(s) | 120, 1138 |
| EagI | CGGCCG | 1 cut(s) | 120 |
| Eam1104I | CTCTTC | 4 cut(s) | 309, 351, 740, 2171 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1773 |
| EarI | CTCTTC | 4 cut(s) | 309, 351, 740, 2171 |
| Ecl136II | GAGCTC | 1 cut(s) | 2662 |
| EclXI | CGGCCG | 1 cut(s) | 120 |
| Eco130I | CCWWGG | 3 cut(s) | 248, 1038, 2182 |
| Eco24I | GRGCYC | 1 cut(s) | 2664 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco32I | GATATC | 1 cut(s) | 2617 |
| Eco47I | GGWCC | 2 cut(s) | 156, 2848 |
| Eco52I | CGGCCG | 1 cut(s) | 120 |
| Eco53kI | GAGCTC | 1 cut(s) | 2662 |
| Eco57I | CTGAAG | 4 cut(s) | 41, 366, 2253, 2349 |
| Eco72I | CACGTG | 1 cut(s) | 1684 |
| Eco81I | CCTNAGG | 1 cut(s) | 1866 |
| Eco88I | CYCGRG | 1 cut(s) | 2970 |
| EcoICRI | GAGCTC | 1 cut(s) | 2662 |
| EcoRII | CCWGG | 6 cut(s) | 1050, 1262, 1591, 1696, 1948, 2065 |
| EcoRV | GATATC | 1 cut(s) | 2617 |
| EcoT14I | CCWWGG | 3 cut(s) | 248, 1038, 2182 |
| EcoT38I | GRGCYC | 1 cut(s) | 2664 |
| ErhI | CCWWGG | 3 cut(s) | 248, 1038, 2182 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 322, 354, 1872, 1904 |
| FaqI | GGGAC | 3 cut(s) | 1574, 1794, 1795 |
| FauNDI | CATATG | 1 cut(s) | 644 |
| FbaI | TGATCA | 2 cut(s) | 475, 2623 |
| FblI | GTMKAC | 2 cut(s) | 693, 2311 |
| FokI | GGATG | 7 cut(s) | 560, 689, 791, 1217, 1664, 2002, 2951 |
| FriOI | GRGCYC | 1 cut(s) | 2664 |
| FspBI | CTAG | 8 cut(s) | 140, 249, 1527, 1778, 1830, 1875, 2270, 2733 |
| GlaI | GCGC | 2 cut(s) | 1088, 1238 |
| GsuI | CTGGAG | 3 cut(s) | 407, 1034, 1719 |
| HaeIII | GGCC | 4 cut(s) | 122, 1140, 1844, 2064 |
| HapII | CCGG | 5 cut(s) | 119, 123, 697, 1146, 1495 |
| HgaI | GACGC | 3 cut(s) | 165, 750, 2013 |
| HhaI | GCGC | 2 cut(s) | 1089, 1239 |
| Hin1I | GRCGYC | 3 cut(s) | 176, 761, 2024 |
| Hin6I | GCGC | 2 cut(s) | 1087, 1237 |
| HinP1I | GCGC | 2 cut(s) | 1087, 1237 |
| HindIII | AAGCTT | 2 cut(s) | 1289, 1598 |
| HinfI | GANTC | 6 cut(s) | 146, 700, 1515, 1568, 1994, 2948 |
| HpaII | CCGG | 5 cut(s) | 119, 123, 697, 1146, 1495 |
| HphI | GGTGA | 7 cut(s) | 337, 824, 899, 1492, 2303, 2656, 2845 |
| Hpy166II | GTNNAC | 8 cut(s) | 694, 803, 1197, 1224, 1432, 1670, 2312, 2530 |
| Hpy8I | GTNNAC | 8 cut(s) | 694, 803, 1197, 1224, 1432, 1670, 2312, 2530 |
| Hpy99I | CGWCG | 5 cut(s) | 181, 264, 466, 766, 2029 |
| HpyAV | CCTTC | 8 cut(s) | 315, 400, 787, 878, 1477, 2440, 2692, 2972 |
| HpyCH4III | ACNGT | 5 cut(s) | 1176, 1348, 2259, 2764, 2782 |
| HpyCH4IV | ACGT | 2 cut(s) | 26, 1683 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 182, 1034, 1637, 1834, 2273, 2360, 2471, 2635 |
| HpySE526I | ACGT | 2 cut(s) | 26, 1683 |
| Hsp92I | GRCGYC | 3 cut(s) | 176, 761, 2024 |
| HspAI | GCGC | 2 cut(s) | 1087, 1237 |
| KroI | GCCGGC | 2 cut(s) | 118, 122 |
| KroNI | GCCGGC | 2 cut(s) | 120, 124 |
| Ksp22I | TGATCA | 2 cut(s) | 475, 2623 |
| KspI | CCGCGG | 1 cut(s) | 1235 |
| LguI | GCTCTTC | 1 cut(s) | 2171 |
| LmnI | GCTCC | 6 cut(s) | 379, 1053, 1579, 2595, 2750, 2920 |
| Lsp1109I | GCAGC | 7 cut(s) | 428, 778, 1246, 1667, 1824, 2187, 2392 |
| LweI | GCATC | 6 cut(s) | 126, 227, 697, 1531, 1642, 2955 |
| MaeI | CTAG | 8 cut(s) | 140, 249, 1527, 1778, 1830, 1875, 2270, 2733 |
| MaeII | ACGT | 2 cut(s) | 26, 1683 |
| MaeIII | GTNAC | 6 cut(s) | 97, 1307, 1684, 2005, 2570, 2714 |
| MbiI | CCGCTC | 1 cut(s) | 2635 |
| MfeI | CAATTG | 1 cut(s) | 1659 |
| MflI | RGATCY | 2 cut(s) | 2218, 2335 |
| MhlI | GDGCHC | 5 cut(s) | 805, 1226, 2278, 2384, 2664 |
| MlsI | TGGCCA | 1 cut(s) | 1140 |
| MluNI | TGGCCA | 1 cut(s) | 1140 |
| MlyI | GAGTC | 2 cut(s) | 1509, 2003 |
| MmeI | TCCRAC | 1 cut(s) | 60 |
| Mox20I | TGGCCA | 1 cut(s) | 1140 |
| MroNI | GCCGGC | 2 cut(s) | 118, 122 |
| MroXI | GAANNNNTTC | 1 cut(s) | 502 |
| MscI | TGGCCA | 1 cut(s) | 1140 |
| MseI | TTAA | 4 cut(s) | 398, 735, 957, 2103 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2566 |
| Msp20I | TGGCCA | 1 cut(s) | 1140 |
| MspA1I | CMGCKG | 1 cut(s) | 1234 |
| MspI | CCGG | 5 cut(s) | 119, 123, 697, 1146, 1495 |
| MspR9I | CCNGG | 7 cut(s) | 1052, 1264, 1495, 1593, 1698, 1950, 2067 |
| MunI | CAATTG | 1 cut(s) | 1659 |
| MvaI | CCWGG | 6 cut(s) | 1052, 1264, 1593, 1698, 1950, 2067 |
| MvnI | CGCG | 2 cut(s) | 1234, 1239 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 182, 1034, 1637, 1834, 2273, 2360, 2471, 2635 |
| NaeI | GCCGGC | 2 cut(s) | 120, 124 |
| NciI | CCSGG | 1 cut(s) | 1495 |
| NcoI | CCATGG | 1 cut(s) | 1038 |
| NdeI | CATATG | 1 cut(s) | 644 |
| NgoMIV | GCCGGC | 2 cut(s) | 118, 122 |
| NlaIV | GGNNCC | 2 cut(s) | 2220, 2337 |
| NmeAIII | GCCGAG | 1 cut(s) | 586 |
| NmuCI | GTSAC | 2 cut(s) | 1684, 2005 |
| NspI | RCATGY | 2 cut(s) | 809, 1375 |
| OliI | CACNNNNGTG | 1 cut(s) | 2566 |
| PagI | TCATGA | 3 cut(s) | 478, 1603, 2839 |
| PaqCI | CACCTGC | 1 cut(s) | 2236 |
| PciSI | GCTCTTC | 1 cut(s) | 2171 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1440 |
| PdiI | GCCGGC | 2 cut(s) | 120, 124 |
| PdmI | GAANNNNTTC | 1 cut(s) | 502 |
| PfeI | GAWTC | 4 cut(s) | 146, 700, 1568, 2948 |
| PfoI | TCCNGGA | 1 cut(s) | 1050 |
| PinAI | ACCGGT | 1 cut(s) | 1145 |
| Ple19I | CGATCG | 1 cut(s) | 2358 |
| PleI | GAGTC | 2 cut(s) | 1509, 2002 |
| PmaCI | CACGTG | 1 cut(s) | 1684 |
| PmlI | CACGTG | 1 cut(s) | 1684 |
| PpsI | GAGTC | 2 cut(s) | 1509, 2002 |
| Ppu21I | YACGTR | 1 cut(s) | 1684 |
| PshAI | GACNNNNGTC | 1 cut(s) | 29 |
| Psp124BI | GAGCTC | 1 cut(s) | 2664 |
| Psp6I | CCWGG | 6 cut(s) | 1050, 1262, 1591, 1696, 1948, 2065 |
| PspCI | CACGTG | 1 cut(s) | 1684 |
| PspGI | CCWGG | 6 cut(s) | 1050, 1262, 1591, 1696, 1948, 2065 |
| PspN4I | GGNNCC | 2 cut(s) | 2220, 2337 |
| PspPI | GGNCC | 3 cut(s) | 156, 2063, 2848 |
| PstI | CTGCAG | 1 cut(s) | 1842 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1180, 1640 |
| PsuI | RGATCY | 2 cut(s) | 2218, 2335 |
| PvuI | CGATCG | 1 cut(s) | 2358 |
| RsaI | GTAC | 5 cut(s) | 1079, 1196, 1358, 1669, 2394 |
| RsaNI | GTAC | 5 cut(s) | 1078, 1195, 1357, 1668, 2393 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2566 |
| SacI | GAGCTC | 1 cut(s) | 2664 |
| SacII | CCGCGG | 1 cut(s) | 1235 |
| SapI | GCTCTTC | 1 cut(s) | 2171 |
| SaqAI | TTAA | 4 cut(s) | 398, 735, 957, 2103 |
| Sau96I | GGNCC | 3 cut(s) | 156, 2063, 2848 |
| SchI | GAGTC | 2 cut(s) | 1509, 2003 |
| ScrFI | CCNGG | 7 cut(s) | 1052, 1264, 1495, 1593, 1698, 1950, 2067 |
| SduI | GDGCHC | 5 cut(s) | 805, 1226, 2278, 2384, 2664 |
| SfaNI | GCATC | 6 cut(s) | 126, 227, 697, 1531, 1642, 2955 |
| SfcI | CTRYAG | 4 cut(s) | 1414, 1838, 2077, 2676 |
| Sfr303I | CCGCGG | 1 cut(s) | 1235 |
| SgrBI | CCGCGG | 1 cut(s) | 1235 |
| SinI | GGWCC | 2 cut(s) | 156, 2848 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2566 |
| SmlI | CTYRAG | 3 cut(s) | 606, 1272, 2630 |
| SmoI | CTYRAG | 3 cut(s) | 606, 1272, 2630 |
| SsiI | CCGC | 5 cut(s) | 1232, 1234, 1244, 2635, 2918 |
| SspI | AATATT | 2 cut(s) | 543, 1755 |
| SspMI | CTAG | 8 cut(s) | 140, 249, 1527, 1778, 1830, 1875, 2270, 2733 |
| SstI | GAGCTC | 1 cut(s) | 2664 |
| StyD4I | CCNGG | 7 cut(s) | 1050, 1262, 1493, 1591, 1696, 1948, 2065 |
| StyI | CCWWGG | 3 cut(s) | 248, 1038, 2182 |
| TaaI | ACNGT | 5 cut(s) | 1176, 1348, 2259, 2764, 2782 |
| TaiI | ACGT | 2 cut(s) | 29, 1686 |
| TatI | WGTACW | 3 cut(s) | 1077, 1356, 1667 |
| TauI | GCSGC | 4 cut(s) | 1234, 1237, 1247, 2638 |
| TfiI | GAWTC | 4 cut(s) | 146, 700, 1568, 2948 |
| Tru1I | TTAA | 4 cut(s) | 398, 735, 957, 2103 |
| Tru9I | TTAA | 4 cut(s) | 398, 735, 957, 2103 |
| TscAI | CASTG | 4 cut(s) | 1561, 2244, 2425, 2769 |
| TseFI | GTSAC | 2 cut(s) | 1684, 2005 |
| TseI | GCWGC | 7 cut(s) | 416, 766, 1259, 1655, 1837, 2200, 2405 |
| Tsp45I | GTSAC | 2 cut(s) | 1684, 2005 |
| TspDTI | ATGAA | 7 cut(s) | 306, 536, 681, 1592, 1760, 1979, 2615 |
| TspGWI | ACGGA | 3 cut(s) | 248, 745, 2609 |
| TspRI | CASTG | 4 cut(s) | 1561, 2244, 2425, 2769 |
| VneI | GTGCAC | 2 cut(s) | 801, 1222 |
| VpaK11BI | GGWCC | 2 cut(s) | 156, 2848 |
| XapI | RAATTY | 3 cut(s) | 394, 1550, 2482 |
| XceI | RCATGY | 2 cut(s) | 809, 1375 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1148, 2803 |
| XmaJI | CCTAGG | 1 cut(s) | 248 |
| XmiI | GTMKAC | 2 cut(s) | 693, 2311 |
| XmnI | GAANNNNTTC | 1 cut(s) | 502 |
| XspI | CTAG | 8 cut(s) | 140, 249, 1527, 1778, 1830, 1875, 2270, 2733 |