Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000463

Physical Location & Seq

Genomic Coordinates Forward (+)

3837801 .. 3838439

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCATCAAAATCTTCAACGGTGGTGAAATCAATTGAGGCGAAGTTCAAGGACGACAGAAGAACTTTAGCTATCCAGTACTACCGCCGTCAGCTTCTTGAAACAGTTGAAAGATTTCAGGTTGTGATTGTTGCTGGCGAATTTGGATGTGGAAAAACTACGCGGATACCGCAATACCTACACCAGGCCGGGTACACAAGGACCGGCAAGAAAAAGATTGCGTGTGTAGAGCCACGGCGAGCTGCTGCTATTAACGCTGCTGCAGCGGTTTCTCAAGACATGGGGGTCGAACTTGGACGTGAAGTACGCTACTGCATTAATCACGATGACTGCACAACCAAAGAGAGTGTCTTGAAGTACATCACGGACGGAATGCTGGTGCAAGAATGGCTTGGCCGGCAAAACTTGTTGACGAGCTACGGCGTGGTGATGGTCGACGAGGCGCACGAGAGAACGCTGGCAAGTGATTACTATGATGTGTTTGTATTAGTGAAGCGTGTTGCTCGAGCTCGACGTGATCTTAAACTTGTTATTGTGTTGAGTGAAAGTGGAAGTACGGGTGATCCTGAGAAGCTCAGTGATTATTTTGATAAGGTTCTGATAATCAGAATTCCACAGGGGCAGTATCGTTGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

213

Amino Acids

23.99

Weight (kDa)

9.15

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca	FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica	MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica	Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis	pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis	RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata	RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora	Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa	Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha	Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana	Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	1 cut(s)	163
AciI	CCGC	4 cut(s)	85, 163, 170, 266
AclWI	GGATC	1 cut(s)	557
AcoI	YGGCCR	1 cut(s)	394
AcsI	RAATTY	2 cut(s)	140, 609
AfaI	GTAC	5 cut(s)	80, 194, 306, 359, 556
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	5 cut(s)	18, 49, 101, 110, 355
AjiI	CACGTC	2 cut(s)	299, 515
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	6 cut(s)	71, 94, 242, 417, 509, 574
AluI	AGCT	6 cut(s)	71, 94, 242, 417, 509, 574
Alw21I	GWGCWC	1 cut(s)	511
AlwI	GGATC	1 cut(s)	557
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	2 cut(s)	186, 394
ApeKI	GCWGC	5 cut(s)	242, 245, 257, 260, 263
ApoI	RAATTY	2 cut(s)	140, 609
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AseI	ATTAAT	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	201
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	3 cut(s)	37, 439, 572
AvaI	CYCGRG	1 cut(s)	504
AvaII	GGWCC	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	511
BauI	CACGAG	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	5 cut(s)	229, 232, 244, 247, 275
BccI	CCATC	1 cut(s)	424
BceAI	ACGGC	3 cut(s)	72, 251, 436
BciT130I	CCWGG	1 cut(s)	185
BciVI	GTATCC	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	190
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	159
BisI	GCNGC	5 cut(s)	243, 246, 258, 261, 264
BlsI	GCNGC	5 cut(s)	244, 247, 259, 262, 265
BmcAI	AGTACT	1 cut(s)	80
Bme1390I	CCNGG	2 cut(s)	185, 190
Bme18I	GGWCC	1 cut(s)	201
BmeT110I	CYCGRG	1 cut(s)	504
BmgBI	CACGTC	2 cut(s)	299, 515
BmgT120I	GGNCC	1 cut(s)	201
BmrFI	CCNGG	2 cut(s)	185, 190
BmsI	GCATC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse118I	RCCGGY	2 cut(s)	203, 396
Bse1I	ACTGG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	2 cut(s)	558, 589
BseNI	ACTGG	1 cut(s)	76
BseXI	GCAGC	5 cut(s)	229, 232, 244, 247, 275
BsgI	GTGCAG	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	2 cut(s)	188, 396
BsiHKAI	GWGCWC	1 cut(s)	511
BsiHKCI	CYCGRG	1 cut(s)	504
BsiSI	CCGG	3 cut(s)	189, 204, 397
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	2 cut(s)	188, 396
BsoBI	CYCGRG	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	511
Bsp143I	GATC	2 cut(s)	517, 562
BspACI	CCGC	4 cut(s)	85, 163, 170, 266
BspANI	GGCC	2 cut(s)	188, 396
BspCNI	CTCAG	2 cut(s)	559, 588
BspFNI	CGCG	1 cut(s)	163
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	1 cut(s)	557
BsrFI	RCCGGY	2 cut(s)	203, 396
BsrI	ACTGG	1 cut(s)	76
BssAI	RCCGGY	2 cut(s)	203, 396
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	2 cut(s)	517, 562
BssSI	CACGAG	1 cut(s)	446
Bst2BI	CACGAG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	22, 106
BstC8I	GCNNGC	4 cut(s)	136, 240, 398, 459
BstDEI	CTNAG	2 cut(s)	567, 575
BstDSI	CCRYGG	1 cut(s)	233
BstENI	CCTNNNNNAGG	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	2 cut(s)	520, 565
BstMBI	GATC	2 cut(s)	517, 562
BstMWI	GCNNNNNNNGC	5 cut(s)	169, 254, 263, 388, 397
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	183, 188
BstSFI	CTRYAG	1 cut(s)	261
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	5 cut(s)	229, 232, 244, 247, 275
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	188, 396
BtgI	CCRYGG	1 cut(s)	233
BtrI	CACGTC	2 cut(s)	299, 515
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	583
Cac8I	GCNNGC	4 cut(s)	136, 240, 398, 459
CfoI	GCGC	1 cut(s)	445
Cfr10I	RCCGGY	2 cut(s)	203, 396
Cfr13I	GGNCC	1 cut(s)	201
Csp6I	GTAC	5 cut(s)	79, 193, 305, 358, 555
CviAII	CATG	1 cut(s)	280
CviQI	GTAC	5 cut(s)	79, 193, 305, 358, 555
DdeI	CTNAG	2 cut(s)	567, 575
DpnI	GATC	2 cut(s)	519, 564
DpnII	GATC	2 cut(s)	517, 562
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	394
Ecl136II	GAGCTC	1 cut(s)	509
Eco24I	GRGCYC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	504
EcoICRI	GAGCTC	1 cut(s)	509
EcoNI	CCTNNNNNAGG	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	609
EcoRII	CCWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	511
FaeI	CATG	1 cut(s)	283
FaiI	YATR	2 cut(s)	281, 474
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FatI	CATG	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	5 cut(s)	243, 246, 258, 261, 264
FokI	GGATG	1 cut(s)	159
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	5 cut(s)	243, 246, 258, 261, 264
GlaI	GCGC	1 cut(s)	444
GluI	GCNGC	5 cut(s)	243, 246, 258, 261, 264
HaeIII	GGCC	2 cut(s)	188, 396
HapII	CCGG	3 cut(s)	189, 204, 397
HhaI	GCGC	1 cut(s)	445
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HincII	GTYRAC	2 cut(s)	411, 436
HindII	GTYRAC	2 cut(s)	411, 436
HpaII	CCGG	3 cut(s)	189, 204, 397
HphI	GGTGA	3 cut(s)	37, 439, 572
Hpy166II	GTNNAC	3 cut(s)	195, 411, 436
Hpy188I	TCNGA	2 cut(s)	600, 608
Hpy188III	TCNNGA	5 cut(s)	98, 275, 323, 352, 566
Hpy8I	GTNNAC	3 cut(s)	195, 411, 436
Hpy99I	CGWCG	2 cut(s)	440, 516
HpyCH4III	ACNGT	2 cut(s)	22, 106
HpyCH4IV	ACGT	2 cut(s)	298, 514
HpyCH4V	TGCA	4 cut(s)	263, 315, 333, 382
HpyF10VI	GCNNNNNNNGC	5 cut(s)	169, 254, 263, 388, 397
HpyF3I	CTNAG	2 cut(s)	567, 575
HpySE526I	ACGT	2 cut(s)	298, 514
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	1 cut(s)	443
KroI	GCCGGC	1 cut(s)	396
KroNI	GCCGGC	1 cut(s)	398
Kzo9I	GATC	2 cut(s)	517, 562
Lsp1109I	GCAGC	5 cut(s)	229, 232, 244, 247, 275
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	2 cut(s)	298, 514
MalI	GATC	2 cut(s)	519, 564
MboI	GATC	2 cut(s)	517, 562
MboII	GAAGA	2 cut(s)	6, 72
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	3 cut(s)	33, 140, 609
MnlI	CCTC	2 cut(s)	31, 433
MroNI	GCCGGC	1 cut(s)	396
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	4 cut(s)	252, 318, 522, 637
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	3 cut(s)	189, 204, 397
MspR9I	CCNGG	2 cut(s)	185, 190
MunI	CAATTG	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	5 cut(s)	169, 254, 263, 388, 397
NaeI	GCCGGC	1 cut(s)	398
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	2 cut(s)	517, 562
NgoMIV	GCCGGC	1 cut(s)	396
NlaIII	CATG	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	2 cut(s)	444, 511
PctI	GAATGC	1 cut(s)	378
PdiI	GCCGGC	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	114
PkrI	GCNGC	5 cut(s)	244, 247, 259, 262, 265
PshBI	ATTAAT	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	201
PspXI	VCTCGAGB	1 cut(s)	504
PstI	CTGCAG	1 cut(s)	265
RsaI	GTAC	5 cut(s)	80, 194, 306, 359, 556
RsaNI	GTAC	5 cut(s)	79, 193, 305, 358, 555
SacI	GAGCTC	1 cut(s)	511
SalI	GTCGAC	1 cut(s)	434
SaqAI	TTAA	4 cut(s)	252, 318, 522, 637
SatI	GCNGC	5 cut(s)	243, 246, 258, 261, 264
Sau3AI	GATC	2 cut(s)	517, 562
Sau96I	GGNCC	1 cut(s)	201
ScaI	AGTACT	1 cut(s)	80
ScrFI	CCNGG	2 cut(s)	185, 190
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	261
Sfr274I	CTCGAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	504
SmlI	CTYRAG	2 cut(s)	273, 504
SmoI	CTYRAG	2 cut(s)	273, 504
Sse9I	AATT	3 cut(s)	33, 140, 609
SsiI	CCGC	4 cut(s)	85, 163, 170, 266
SstI	GAGCTC	1 cut(s)	511
StyD4I	CCNGG	2 cut(s)	183, 188
TaaI	ACNGT	2 cut(s)	22, 106
TaiI	ACGT	2 cut(s)	301, 517
TaqI	TCGA	4 cut(s)	288, 435, 505, 511
TasI	AATT	3 cut(s)	33, 140, 609
TatI	WGTACW	2 cut(s)	78, 357
Tru1I	TTAA	4 cut(s)	252, 318, 522, 637
Tru9I	TTAA	4 cut(s)	252, 318, 522, 637
TscAI	CASTG	1 cut(s)	583
TseI	GCWGC	5 cut(s)	242, 245, 257, 260, 263
TspGWI	ACGGA	2 cut(s)	380, 384
TspRI	CASTG	1 cut(s)	583
VpaK11BI	GGWCC	1 cut(s)	201
VspI	ATTAAT	1 cut(s)	318
XagI	CCTNNNNNAGG	1 cut(s)	182
XapI	RAATTY	2 cut(s)	140, 609
XhoI	CTCGAG	1 cut(s)	504
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.