FvH4_3g40450

Pre-mRNA-splicing factor ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
34148046 .. 34150168
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40450.t1

Sequence Viewer

Length: 2091 bp
ATGGCATCGTCGTCGTGTCCTGTGCAAGTGCCCTGTGAGTCCGGCAAATGGGATTCCGATAAGAAACGGTACAGGAGTAGTGAAGAGAATGATGATGAGATTATTGTTTCACTGGAGCAAGACGAAAATCAAGAGAGACAGGTTAAAAAGATGCCAAATAGTGAAGATGATGATGATGATGGGCAAGTGCATATCATCAAGGAGAAGCTCCAAGAAGAGAGAAAATCATTACGTATCTACGAGTGTCGTGATTCATTGTTGGAATGTGTGGGTAGTAATCAGGTTGCTATTATCGTTGGCGAAGCTGGGTGTGGAAAAACTACACAGATACCTCAATATATATACGAGGCTGGATATGGTGAAAAAGGAAGGATTGGATGCACTCAACCATATGAATTTGCTACCCGGAGTGCTGCTGCTAGAGTCTCTCAAGAAATGGGTGTCAAGCTAGGGCATCATGTTGTGGGCTATTCCATAGCTTTCGAAGATTGCACATCTGAAAACACTGTTTTGAGATACATGAGTGATGAGACGTTGTTGCATCAACTCTGTGGAGAACCAGATTTGATAAGTTATAGTGTGTTGATGGTGGACGACGCCCATGAGCGAACACTCTCAACTGATATACTGGTTGGATTATTGAAGGACATTCTGCGGTTTAGAACCAACCTTAAACTGCTTATCTCAACAGCAACTATTGATTGTGCCTTAAAGTTCAGTCAATTTTTTGATCTAGCTCCAATTTTGGACATTCGAAAAGTGAAACATGCTCACAACACCGAACATGTTTTCTGCTTGAATGCAGCTATGATTCACACAAGTGGAGATACATTGGTGTTTCTGCCTGATCGAGAAGAGATAGAAGTAACAGTCGACGAATTGCAGCAGCGATTTCCTCATCAGCTCTCTATCCGCCCTTTTTATGAAAACATGTCTCCCGAGCTTGAAGCATTGTTTTCTGCGCCCACACCTCAAGGGCTCAGGAAGGTTGTCCTTGCCACAAGCATAGCTGAAACATTTTGGCCGACTAAAGCTGGCGTCGATTATGTGATTGACTCGGGGGAGTGCCTGATTAAGAAGTATGATCCAATCACTGACATGGAGTCGTTAGAAGTAACTGGCATCTCAAAAGCATCAGCTATGCTAAGGGCAAATCCACTCTTTGGCAAGTGCATCCGAATGCCTCCTCGACAGGATCATCACAACAATGATCCTCACAACATTCCACTGCCAGTAAAACGTAGCAACCTCGCCAATGTTGTTCTTACTCTTCGGCATCTAGGGGTTACTGACTTGACACATTTTGATTTTTTGGACCCTCCAGAGGCTGAAGCGCTAAGTAAAGCCTTGGAAGTATTATATGCACTCGGTGCATTAGAGAATAAAGGCCAACTTACTGAGATTGGAGAACTTACTGTGGTAGGAGAACTGATGGCACAGTTCCCTCTAGATGCAATGCTGTCTAAGGTGATAGTTGCTTCGTATCAGTACAAGTGCTCAGCTGAGATAATTTCGATTGTTGCCATGCTTTCCGCCTGTGATCACAGTTCAATCTTTTATCGTCCAGATGACAATCCAGCCGATGCCGACAATGCACGAATGCGTTTTCACTTTGGGAATGTGGGAGATCACATTACATTACTCAAGGTTTATAACGAATGGAAAGACTCAAACTACTCATCCCAATGGTGCGATGAAAACTACATACAAGCAAGGACCATGAAAAGAGCAAGAGATATAAGGGACCAACTTGAGCGGCTCTTGAAGAAGCAGGTCAGGATTGAGCTCTCCTCAAATCCCCTTGGTATAGAGCCTATAAAGAAAGCAATCACATCTGGTTTCTTCCTTCACTGCGCAAAGCTGCATCACGGAACATACAGAAGAGTCAAACAGTTGCCAAATGCTCTCCATATACACCACAGCTCAGGGCTGGCACAAGTATCTCCGAGATGGGTTTTATACCATGAGTTGGAGTTAGACCTCGAAACCACTGATCAATACATGAGACAGGTTACGGAGATCAATCCGGAGTGGTTGCTGGAAATAGCTCCACATTATTACCAGTACCAGCTAGAAGATATCACAGATTAG

Protein Analysis

697

Amino Acids

78.93

Weight (kDa)

5.3

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_HA2 PF04408 449 - 483 2.5e-06 Helicase associated domain (HA2), winged-helix
HA2_C PF21010 484 - 547 2.1e-10 Helicase associated domain (HA2), ratchet-like
OB_NTP_bind PF07717 606 - 686 5.6e-16 Oligonucleotide/oligosaccharide-binding (OB)-fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1653
Acc16I TGCGCA 1 cut(s) 1855
Acc36I ACCTGC 1 cut(s) 1762
AccB7I CCANNNNNTGG 2 cut(s) 1163, 1969
AccBSI CCGCTC 1 cut(s) 1756
AccI GTMKAC 1 cut(s) 873
AccIII TCCGGA 1 cut(s) 2026
AciI CCGC 4 cut(s) 655, 913, 1533, 1756
AclWI GGATC 3 cut(s) 1079, 1203, 1205
AcoI YGGCCR 1 cut(s) 1022
AcsI RAATTY 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 1350
AcyI GRCGYC 2 cut(s) 597, 1038
AdeI CACNNNGTG 1 cut(s) 1370
AfaI GTAC 3 cut(s) 71, 1490, 2066
AfeI AGCGCT 1 cut(s) 1335
AfiI CCNNNNNNNGG 4 cut(s) 48, 1163, 1324, 1969
AflIII ACRYGT 2 cut(s) 784, 930
AgsI TTSAA 5 cut(s) 643, 799, 947, 1551, 1765
AhdI GACNNNNNGTC 1 cut(s) 1102
AleI CACNNNNGTG 1 cut(s) 819
Alw21I GWGCWC 2 cut(s) 1499, 1788
Alw26I GTCTC 5 cut(s) 130, 430, 524, 939, 1999
AlwI GGATC 3 cut(s) 1079, 1203, 1205
AlwNI CAGNNNCTG 1 cut(s) 1328
Ama87I CYCGRG 2 cut(s) 938, 1057
Aor13HI TCCGGA 1 cut(s) 2026
Aor51HI AGCGCT 1 cut(s) 1335
AoxI GGCC 2 cut(s) 1022, 1387
ApeKI GCWGC 6 cut(s) 413, 416, 803, 883, 886, 1861
ApoI RAATTY 1 cut(s) 395
AspLEI GCGC 3 cut(s) 964, 1336, 1856
AspS9I GGNCC 3 cut(s) 1315, 1716, 1744
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 371, 1480
AsuII TTCGAA 2 cut(s) 483, 754
AvaI CYCGRG 2 cut(s) 938, 1057
AvaII GGWCC 3 cut(s) 1315, 1716, 1744
BaeGI GKGCMC 1 cut(s) 33
BaeI ACNNNNGTAYC 6 cut(s) 61, 94, 508, 541, 819, 852
BanII GRGCYC 2 cut(s) 981, 1788
Bbv12I GWGCWC 2 cut(s) 1499, 1788
BbvI GCAGC 6 cut(s) 400, 403, 815, 895, 898, 1848
BccI CCATC 4 cut(s) 173, 580, 1426, 1944
BcgI CGANNNNNNTGC 1 cut(s) 28
BclI TGATCA 2 cut(s) 1540, 1993
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 5 cut(s) 130, 430, 524, 939, 1999
BfaI CTAG 6 cut(s) 420, 449, 734, 1280, 1448, 2072
BfoI RGCGCY 1 cut(s) 1337
BfuAI ACCTGC 1 cut(s) 1762
BisI GCNGC 7 cut(s) 414, 417, 804, 884, 887, 1757, 1862
BlpI GCTNAGC 1 cut(s) 1498
BlsI GCNGC 7 cut(s) 415, 418, 805, 885, 888, 1758, 1863
Bme1390I CCNGG 1 cut(s) 406
Bme18I GGWCC 3 cut(s) 1315, 1716, 1744
BmeRI GACNNNNNGTC 1 cut(s) 1102
BmeT110I CYCGRG 2 cut(s) 938, 1057
BmgT120I GGNCC 3 cut(s) 1315, 1716, 1744
BmiI GGNNCC 2 cut(s) 1317, 1745
BmrFI CCNGG 1 cut(s) 406
BplI GAGNNNNNCTC 2 cut(s) 1775, 1807
BpmI CTGGAG 2 cut(s) 134, 1305
Bpu10I CCTNAGC 3 cut(s) 980, 1145, 1924
Bpu1102I GCTNAGC 1 cut(s) 1498
Bpu14I TTCGAA 2 cut(s) 483, 754
BpuEI CTTGAG 4 cut(s) 414, 957, 1628, 1772
BpuMI CCSGG 1 cut(s) 406
BsaAI YACGTR 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 1572
BsaHI GRCGYC 2 cut(s) 597, 1038
BsaJI CCNNGG 2 cut(s) 1347, 1801
BsaWI WCCGGW 1 cut(s) 2026
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 1163, 1324, 1969
Bse1I ACTGG 5 cut(s) 117, 633, 1123, 1232, 2062
Bse3DI GCAATG 1 cut(s) 1461
Bse8I GATNNNNATC 1 cut(s) 1572
BseAI TCCGGA 1 cut(s) 2026
BseDI CCNNGG 2 cut(s) 1347, 1801
BseGI GGATG 3 cut(s) 383, 1173, 1679
BseJI GATNNNNATC 1 cut(s) 1572
BseLI CCNNNNNNNGG 4 cut(s) 48, 1163, 1324, 1969
BseMI GCAATG 1 cut(s) 1461
BseMII CTCAG 5 cut(s) 994, 1389, 1494, 1512, 1938
BseNI ACTGG 5 cut(s) 117, 633, 1123, 1232, 2062
BseRI GAGGAG 2 cut(s) 1176, 1780
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 6 cut(s) 400, 403, 815, 895, 898, 1848
BseYI CCCAGC 1 cut(s) 305
BshFI GGCC 2 cut(s) 1024, 1389
BsiHKAI GWGCWC 2 cut(s) 1499, 1788
BsiHKCI CYCGRG 2 cut(s) 938, 1057
BsiSI CCGG 3 cut(s) 42, 406, 2027
BslFI GGGAC 1 cut(s) 1757
BslI CCNNNNNNNGG 4 cut(s) 48, 1163, 1324, 1969
BsmAI GTCTC 5 cut(s) 130, 430, 524, 939, 1999
BsmBI CGTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 1757
BsmI GAATGC 3 cut(s) 805, 1185, 1605
BsnI GGCC 2 cut(s) 1024, 1389
BsoBI CYCGRG 2 cut(s) 938, 1057
Bsp119I TTCGAA 2 cut(s) 483, 754
Bsp1286I GDGCHC 4 cut(s) 33, 981, 1499, 1788
Bsp13I TCCGGA 1 cut(s) 2026
Bsp143I GATC 9 cut(s) 730, 847, 1084, 1195, 1210, 1540, 1627, 1993, 2019
Bsp1720I GCTNAGC 1 cut(s) 1498
BspACI CCGC 4 cut(s) 655, 913, 1533, 1756
BspANI GGCC 2 cut(s) 1024, 1389
BspCNI CTCAG 5 cut(s) 993, 1390, 1495, 1511, 1937
BspEI TCCGGA 1 cut(s) 2026
BspLI GGNNCC 2 cut(s) 1317, 1745
BspMI ACCTGC 1 cut(s) 1762
BspPI GGATC 3 cut(s) 1079, 1203, 1205
BspT104I TTCGAA 2 cut(s) 483, 754
BsrBI CCGCTC 1 cut(s) 1756
BsrDI GCAATG 1 cut(s) 1461
BsrI ACTGG 5 cut(s) 117, 633, 1123, 1232, 2062
BssECI CCNNGG 2 cut(s) 1347, 1801
BssMI GATC 9 cut(s) 730, 847, 1084, 1195, 1210, 1540, 1627, 1993, 2019
BssNI GRCGYC 2 cut(s) 597, 1038
BssT1I CCWWGG 2 cut(s) 1347, 1801
Bst4CI ACNGT 7 cut(s) 69, 508, 871, 1417, 1440, 1547, 1893
Bst6I CTCTTC 5 cut(s) 78, 210, 849, 1275, 1876
BstACI GRCGYC 2 cut(s) 597, 1038
BstAPI GCANNNNNTGC 1 cut(s) 1370
BstBAI YACGTR 1 cut(s) 233
BstBI TTCGAA 2 cut(s) 483, 754
BstC8I GCNNGC 2 cut(s) 1036, 1932
BstDEI CTNAG 8 cut(s) 980, 1145, 1337, 1398, 1464, 1498, 1503, 1924
BstF5I GGATG 3 cut(s) 383, 1173, 1679
BstH2I RGCGCY 1 cut(s) 1337
BstHHI GCGC 3 cut(s) 964, 1336, 1856
BstKTI GATC 9 cut(s) 733, 850, 1087, 1198, 1213, 1543, 1630, 1996, 2022
BstMAI GTCTC 5 cut(s) 130, 430, 524, 939, 1999
BstMBI GATC 9 cut(s) 730, 847, 1084, 1195, 1210, 1540, 1627, 1993, 2019
BstMWI GCNNNNNNNGC 2 cut(s) 1370, 1592
BstNSI RCATGY 3 cut(s) 770, 788, 934
BstSCI CCNGG 1 cut(s) 404
BstSLI GKGCMC 1 cut(s) 33
BstSNI TACGTA 1 cut(s) 233
BstV1I GCAGC 6 cut(s) 400, 403, 815, 895, 898, 1848
BsuRI GGCC 2 cut(s) 1024, 1389
BtgZI GCGATG 1 cut(s) 1707
BtsCI GGATG 3 cut(s) 383, 1173, 1679
BtsI GCAGTG 2 cut(s) 1226, 1849
BtsIMutI CAGTG 6 cut(s) 110, 504, 1092, 1226, 1849, 1989
BveI ACCTGC 1 cut(s) 1762
Cac8I GCNNGC 2 cut(s) 1036, 1932
CaiI CAGNNNCTG 1 cut(s) 1328
CfoI GCGC 3 cut(s) 964, 1336, 1856
Cfr13I GGNCC 3 cut(s) 1315, 1716, 1744
CseI GACGC 2 cut(s) 605, 1027
Csp6I GTAC 3 cut(s) 70, 1489, 2065
CviQI GTAC 3 cut(s) 70, 1489, 2065
DdeI CTNAG 8 cut(s) 980, 1145, 1337, 1398, 1464, 1498, 1503, 1924
DpnI GATC 9 cut(s) 732, 849, 1086, 1197, 1212, 1542, 1629, 1995, 2021
DpnII GATC 9 cut(s) 730, 847, 1084, 1195, 1210, 1540, 1627, 1993, 2019
DraIII CACNNNGTG 1 cut(s) 1370
DriI GACNNNNNGTC 1 cut(s) 1102
EaeI YGGCCR 1 cut(s) 1022
Eam1104I CTCTTC 5 cut(s) 78, 210, 849, 1275, 1876
Eam1105I GACNNNNNGTC 1 cut(s) 1102
EarI CTCTTC 5 cut(s) 78, 210, 849, 1275, 1876
EciI GGCGGA 2 cut(s) 902, 1522
Ecl136II GAGCTC 1 cut(s) 1786
Eco105I TACGTA 1 cut(s) 233
Eco130I CCWWGG 2 cut(s) 1347, 1801
Eco24I GRGCYC 2 cut(s) 981, 1788
Eco32I GATATC 1 cut(s) 2080
Eco47I GGWCC 3 cut(s) 1315, 1716, 1744
Eco47III AGCGCT 1 cut(s) 1335
Eco53kI GAGCTC 1 cut(s) 1786
Eco57I CTGAAG 1 cut(s) 1350
Eco88I CYCGRG 2 cut(s) 938, 1057
EcoICRI GAGCTC 1 cut(s) 1786
EcoRV GATATC 1 cut(s) 2080
EcoT14I CCWWGG 2 cut(s) 1347, 1801
EcoT38I GRGCYC 2 cut(s) 981, 1788
ErhI CCWWGG 2 cut(s) 1347, 1801
Esp3I CGTCTC 1 cut(s) 524
FalI AAGNNNNNCTT 2 cut(s) 1377, 1409
FaqI GGGAC 1 cut(s) 1757
FauNDI CATATG 1 cut(s) 391
FbaI TGATCA 2 cut(s) 1540, 1993
FblI GTMKAC 1 cut(s) 873
Fnu4HI GCNGC 7 cut(s) 414, 417, 804, 884, 887, 1757, 1862
FokI GGATG 3 cut(s) 390, 1160, 1666
FriOI GRGCYC 2 cut(s) 981, 1788
Fsp4HI GCNGC 7 cut(s) 414, 417, 804, 884, 887, 1757, 1862
FspBI CTAG 6 cut(s) 420, 449, 734, 1280, 1448, 2072
FspI TGCGCA 1 cut(s) 1855
GlaI GCGC 3 cut(s) 963, 1335, 1855
GluI GCNGC 7 cut(s) 414, 417, 804, 884, 887, 1757, 1862
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 2 cut(s) 134, 1305
HaeII RGCGCY 1 cut(s) 1337
HaeIII GGCC 2 cut(s) 1024, 1389
HapII CCGG 3 cut(s) 42, 406, 2027
HgaI GACGC 2 cut(s) 605, 1027
HhaI GCGC 3 cut(s) 964, 1336, 1856
Hin1I GRCGYC 2 cut(s) 597, 1038
Hin6I GCGC 3 cut(s) 962, 1334, 1854
HinP1I GCGC 3 cut(s) 962, 1334, 1854
HincII GTYRAC 1 cut(s) 874
HindII GTYRAC 1 cut(s) 874
HinfI GANTC 9 cut(s) 38, 53, 251, 423, 811, 1055, 1103, 1667, 1884
HpaII CCGG 3 cut(s) 42, 406, 2027
HphI GGTGA 2 cut(s) 371, 1480
Hpy166II GTNNAC 2 cut(s) 592, 874
Hpy188I TCNGA 4 cut(s) 58, 499, 1178, 1947
Hpy8I GTNNAC 2 cut(s) 592, 874
Hpy99I CGWCG 5 cut(s) 13, 16, 599, 878, 1043
HpyAV CCTTC 4 cut(s) 363, 637, 979, 1856
HpyCH4III ACNGT 7 cut(s) 69, 508, 871, 1417, 1440, 1547, 1893
HpyCH4IV ACGT 3 cut(s) 232, 533, 1240
HpyF10VI GCNNNNNNNGC 2 cut(s) 1370, 1592
HpyF3I CTNAG 8 cut(s) 980, 1145, 1337, 1398, 1464, 1498, 1503, 1924
HpySE526I ACGT 3 cut(s) 232, 533, 1240
Hsp92I GRCGYC 2 cut(s) 597, 1038
HspAI GCGC 3 cut(s) 962, 1334, 1854
Kpn2I TCCGGA 1 cut(s) 2026
Ksp22I TGATCA 2 cut(s) 1540, 1993
Kzo9I GATC 9 cut(s) 730, 847, 1084, 1195, 1210, 1540, 1627, 1993, 2019
LmnI GCTCC 4 cut(s) 115, 213, 742, 2053
Lsp1109I GCAGC 6 cut(s) 400, 403, 815, 895, 898, 1848
MaeI CTAG 6 cut(s) 420, 449, 734, 1280, 1448, 2072
MaeII ACGT 3 cut(s) 232, 533, 1240
MaeIII GTNAC 4 cut(s) 865, 1114, 1285, 2011
MalI GATC 9 cut(s) 732, 849, 1086, 1197, 1212, 1542, 1629, 1995, 2021
MbiI CCGCTC 1 cut(s) 1756
MboI GATC 9 cut(s) 730, 847, 1084, 1195, 1210, 1540, 1627, 1993, 2019
MhlI GDGCHC 4 cut(s) 33, 981, 1499, 1788
MluCI AATT 5 cut(s) 395, 722, 741, 878, 1509
MlyI GAGTC 6 cut(s) 47, 432, 1049, 1112, 1661, 1893
MmeI TCCRAC 3 cut(s) 240, 613, 1950
MroI TCCGGA 1 cut(s) 2026
MseI TTAA 4 cut(s) 144, 672, 710, 1074
MslI CAYNNNNRTG 5 cut(s) 819, 1097, 1178, 1206, 1684
MspA1I CMGCKG 1 cut(s) 1502
MspI CCGG 3 cut(s) 42, 406, 2027
MspR9I CCNGG 1 cut(s) 406
Mva1269I GAATGC 3 cut(s) 805, 1185, 1605
MwoI GCNNNNNNNGC 2 cut(s) 1370, 1592
NciI CCSGG 1 cut(s) 406
NdeI CATATG 1 cut(s) 391
NdeII GATC 9 cut(s) 730, 847, 1084, 1195, 1210, 1540, 1627, 1993, 2019
NlaIV GGNNCC 2 cut(s) 1317, 1745
NsbI TGCGCA 1 cut(s) 1855
NspI RCATGY 3 cut(s) 770, 788, 934
NspV TTCGAA 2 cut(s) 483, 754
OliI CACNNNNGTG 1 cut(s) 819
PciI ACATGT 2 cut(s) 784, 930
PctI GAATGC 3 cut(s) 805, 1185, 1605
PfeI GAWTC 3 cut(s) 53, 251, 811
PflMI CCANNNNNTGG 2 cut(s) 1163, 1969
PkrI GCNGC 7 cut(s) 415, 418, 805, 885, 888, 1758, 1863
PleI GAGTC 6 cut(s) 46, 431, 1049, 1111, 1661, 1892
PpsI GAGTC 6 cut(s) 46, 431, 1049, 1111, 1661, 1892
Ppu21I YACGTR 1 cut(s) 233
PscI ACATGT 2 cut(s) 784, 930
PsiI TTATAA 1 cut(s) 1653
Psp124BI GAGCTC 1 cut(s) 1788
PspFI CCCAGC 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 1317, 1745
PspPI GGNCC 3 cut(s) 1315, 1716, 1744
PstNI CAGNNNCTG 1 cut(s) 1328
PvuII CAGCTG 1 cut(s) 1502
RsaI GTAC 3 cut(s) 71, 1490, 2066
RsaNI GTAC 3 cut(s) 70, 1489, 2065
RseI CAYNNNNRTG 5 cut(s) 819, 1097, 1178, 1206, 1684
SacI GAGCTC 1 cut(s) 1788
SalI GTCGAC 1 cut(s) 872
SaqAI TTAA 4 cut(s) 144, 672, 710, 1074
SatI GCNGC 7 cut(s) 414, 417, 804, 884, 887, 1757, 1862
Sau3AI GATC 9 cut(s) 730, 847, 1084, 1195, 1210, 1540, 1627, 1993, 2019
Sau96I GGNCC 3 cut(s) 1315, 1716, 1744
SchI GAGTC 6 cut(s) 47, 432, 1049, 1112, 1661, 1893
ScrFI CCNGG 1 cut(s) 406
SduI GDGCHC 4 cut(s) 33, 981, 1499, 1788
SfuI TTCGAA 2 cut(s) 483, 754
SinI GGWCC 3 cut(s) 1315, 1716, 1744
SmiMI CAYNNNNRTG 5 cut(s) 819, 1097, 1178, 1206, 1684
SmlI CTYRAG 4 cut(s) 429, 972, 1643, 1751
SmoI CTYRAG 4 cut(s) 429, 972, 1643, 1751
SnaBI TACGTA 1 cut(s) 233
Sse9I AATT 5 cut(s) 395, 722, 741, 878, 1509
SsiI CCGC 4 cut(s) 655, 913, 1533, 1756
SspMI CTAG 6 cut(s) 420, 449, 734, 1280, 1448, 2072
SstI GAGCTC 1 cut(s) 1788
StyD4I CCNGG 1 cut(s) 404
StyI CCWWGG 2 cut(s) 1347, 1801
TaaI ACNGT 7 cut(s) 69, 508, 871, 1417, 1440, 1547, 1893
TaiI ACGT 3 cut(s) 235, 536, 1243
TaqI TCGA 8 cut(s) 483, 754, 850, 873, 1041, 1189, 1514, 1983
TasI AATT 5 cut(s) 395, 722, 741, 878, 1509
TatI WGTACW 1 cut(s) 1488
TauI GCSGC 1 cut(s) 1759
TfiI GAWTC 3 cut(s) 53, 251, 811
Tru1I TTAA 4 cut(s) 144, 672, 710, 1074
Tru9I TTAA 4 cut(s) 144, 672, 710, 1074
TscAI CASTG 6 cut(s) 117, 511, 1099, 1233, 1856, 1996
TseI GCWGC 6 cut(s) 413, 416, 803, 883, 886, 1861
TspDTI ATGAA 5 cut(s) 243, 408, 939, 1710, 1736
TspGWI ACGGA 2 cut(s) 1884, 2030
TspRI CASTG 6 cut(s) 117, 511, 1099, 1233, 1856, 1996
Van91I CCANNNNNTGG 2 cut(s) 1163, 1969
VpaK11BI GGWCC 3 cut(s) 1315, 1716, 1744
XapI RAATTY 1 cut(s) 395
XbaI TCTAGA 1 cut(s) 1447
XceI RCATGY 3 cut(s) 770, 788, 934
XmiI GTMKAC 1 cut(s) 873
XspI CTAG 6 cut(s) 420, 449, 734, 1280, 1448, 2072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.