Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000463

Physical Location & Seq

Genomic Coordinates Forward (+)

14872265 .. 14879739

Gene Structure 7475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3135 bp

ATGGGGAGCAATGATTTGAACACCTGGGTTTCGGACAAGTTGATGGTTCTGCTAGGCTTTTCACAAACTGCTGTCGTGCAGTATCTAATTGCAATGGCTAAACAATCAAAATCACCAGGTGAACTCGTCCGTGAATTGGTGGAATGCGGGTTTTCTTTGTCCGGTGATACCCGCGCGTTCGCAGAAGAAATTTATGCTAGAGCTCCCCGGAAAACCCCTGGAGTGAATCTCTACCAGCAACAGGAAGCAGAGGCAGCGATGCTGTTGAAGAAGCAGAAAACTTTTTCCCTTTTAGAGGCTGATCATGATGAAGATGAAAACAATGTGAAGAAACAATCTGCTTCGAAAACCGGAAAGTCAGATAAAGGCCAAAAGAGGTTCAGGAAGAAAAGTGAGCAATTGGAAGACGACGATGATGAGGTAGTGATTGTTAGAGAGGACAAAAGGAATGTTAGGAGAAAGGTTTCCGAAGACGAGGATGATGGCACTGAGTCTGAAGAGGAAAGATTACGTGACCAAAGGGAGAGAGAAGAACTAGAGCAGCACCTAAGAGAACGAGATACTGCACGGACACGAAAGCTAACCGAGCCAAAAATGTCAAAGAAAGAGCAAGAAGAGTTTGTTCGAAGAGATAGTGCTGTAGACAAGGGTGATATTGAATCCTTAAGGAAATTCTCATGGCAAGAATATATGAAGAAAAGGAAACAGAAGAAAGTACTAGAGCTAAAGGATGATATAGAAGATGAACCATACCTTTTTGGAGATGAAAAGCTCACTGAAAGAGAAATTCGTGAATTTAGATACAAGAGAGAAATCTATGAGCTCATAAAGAAAAGTACACAAGAAGAAGATAATGTAGGAGAGTATAGAATGCCGGATGCATATGATCAACAGGGAAGTGTTGATCAGGAGAAGAGGTTTGCTGTTTCTGTACAACGGTACAGGGACATGGGTTCCGCAGAGAAAATGAACCCCTTTGCAGAGCAAGAAGCTTGGGAGGACCATCAGATTGAAAACGCAGCATTAAAATTTGGTGCAAAGAATAAGGAGGTCTCAGACAATTACGAGTTTGTATTTGAAGACCAAATAGACTTCATAAAGGCATCTGTGTTGGCTGGTGATAATTATGAAGATGAAATGCATGCTAAACCATCTCAAGATTCTGCTGGGAAATCGGCTTTTCATATGCTTCAGGAGGATAGAAAAGCTCTGCCAATTTATACATATCGTGATCAACTTCTTAATGCTGTGAAAGATCATCAGGTTCTTATCATTGTGGGGGAAACGGGTTCTGGCAAGACTACACAGATACCCCAATATCTTCACGAAGCTGGTTACACAAAGCTTGGAAAGGTTGGTTGTACGCAGCCTCGAAGAGTTGCGGCTATGAGTGTGGCTGCTCGTGTTGCTCAAGAGATGGGTGGTAAACTTGGGCATGAGGTCGGCTATTCCATTCGATTTGAGGATTGTACGTCTGAGAAAACAATTCTGAAATATATGACTGATGGAATGCTTTTGCGTGAGTTGCTTGGTGAGCCAGATCTGGGCAGTTACAGTGTTATCATCGTGGATGAGGCGCATGAAAGAACTTTGCGCACCGACATACTATTTGGATTAGTGAAGGATATAGCACGGGCTCGGCCTGATCTGAAGTTATTGATATCCAGTGCAACCATGGATGCAGAGAAGTTTTCTGATTTTTTTGACCAAGCCCCTATCTTCAGGTTCCCAGGAAGAAGGTATCCTGTTGACATTTGCTTTACTACTGCACCTGAAGCTGATTACATGGACGCAGCAATAACTACTGTGCTTACGATACATGTGAAGGAGCCACTTGGGGATGTTTTGGTCTTCCTCCCAGGTCAAGAGGAAATTGAAGCCGTAGAAGAGAACTTGAAGCACAAGATAAGAGGTTTGGGTACAAAGATCCGCGAACTCATTATATGCCCAATTTACGCTAACCTTCCAAGTGAGCTCCAAGCAAAAATATTTGAACCAACTCCTGAAGGGGCACGAAAAGTCGTGCTAGCAACTAATATTGCTGAAACATCATTGACCATCGATGGTATAAAGTATGTCGTTGATCCAGGCTTTAGCAAGATGAAATCCTATAACCCTAGAACAGGGATGGAATCTTTGCTTGTAACGCCTATCTCTAAGGCTTCAGCGACTCAACGAACTGGTCGAGCTGGAAGAACCAGTCCAGGGAAGTGTTACCGCCTGTACACGGCGTTTAATTACTACAATGACTTGGAGGACAATACCGTACCTGAAATACAAAGGACTAATCTTGCTAGTGTGGTGCTTTCTTTGAAGAGTCTTGGTATTCATAATCTGCTGAACTTTGACTTTATGGACCCTCCGCCTTCTGAAGCTCTTATAAAGTCCTTAGAGCTGCTCTTTGCTCTGGGTGCTCTCAATCAGCTTGGCGAATTGACTAAAGCTGGTAGACGGATGGCAGAGTTTCCTCTTGATCCAATGTTGTCGAAGATGATTGTTGTTTCTGACAAATACAAATGCTCCGATGAGATTATATCAATTGCTGCTATGTTGTCCATCGGGCCTTCTATCTTTTACCGCCCCAAGGACAAGCAAGTTCACGCTGACAATGCAATGAAGAATTTTCACGTTGGAAATGTCGGTGATCACATTGCTTTCCTGAAGATTTACAATTCGTGGAAGGAAACGAACTACTCAACACAATGGTGCTACGAGAACTATATTCAGGTTCGGAGTATGAAAAGAGCCAGAGATATCCGTGATCAGTTGGAGGGTCTTCTCGAGAGAGTTGAAATAGACGTTAGCTCAAACGCGAATGAGTTGGATTCAATAAGAAAATCCATTGTAGCTGGTTTCTTTCCACACACTGCGAAGCTACAGAAGAATGGATCATATCGAACAGTGAAGCATCCCCAAACCGTACACATACATCCAGCCTCTGGCTTATCTCAGGTATTGCCGAGATGGGTTGTATATCATCAACTAGTCCTTACCTCTAAGGAATACATGCGACAGGTAACAGAGTTAAAACCCGAGTGGTTGATTGAGATAGCTCCACACTATTATCAGCTCAAGGACGTTGAAGATGCTACATCCAAGAAAATGCCCAAAACCAGTGGCCGAGCTGTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

1044

Amino Acids

119.13

Weight (kDa)

5.84

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	274 - 425	2.5e-06	DEAD/DEAH box helicase
AAA_22	PF13401	281 - 398	7.8e-07	AAA domain
Helicase_C	PF00271	470 - 595	6.9e-11	Helicase conserved C-terminal domain
WHD_HA2	PF04408	658 - 686	6.8e-09	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	687 - 747	1.6e-10	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	806 - 883	1.9e-23	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca	FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica	MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica	Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis	pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis	RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata	RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora	Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa	Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha	Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana	Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2381
Acc16I	TGCGCA	1 cut(s)	1595
AccB7I	CCANNNNNTGG	1 cut(s)	2939
AccI	GTMKAC	2 cut(s)	642, 2449
AccII	CGCG	4 cut(s)	174, 176, 1932, 2813
AciI	CCGC	8 cut(s)	147, 172, 957, 1382, 1930, 2218, 2363, 2578
AclWI	GGATC	4 cut(s)	1921, 2078, 2468, 2896
AcoI	YGGCCR	1 cut(s)	3118
AcsI	RAATTY	6 cut(s)	189, 671, 786, 794, 1028, 2620
AcuI	CTGAAG	9 cut(s)	516, 1175, 1670, 1705, 1794, 2025, 2148, 2391, 2681
AdeI	CACNNNGTG	1 cut(s)	119
AflII	CTTAAG	1 cut(s)	664
AflIII	ACRYGT	1 cut(s)	1819
AhlI	ACTAGT	1 cut(s)	2983
AjnI	CCWGG	7 cut(s)	23, 115, 217, 1729, 1858, 2086, 2203
AleI	CACNNNNGTG	1 cut(s)	2704
Alw21I	GWGCWC	4 cut(s)	205, 825, 1977, 2416
Alw26I	GTCTC	1 cut(s)	1057
AlwI	GGATC	4 cut(s)	1921, 2078, 2468, 2896
AlwNI	CAGNNNCTG	1 cut(s)	2939
Ama87I	CYCGRG	2 cut(s)	2780, 3032
AoxI	GGCC	4 cut(s)	367, 1640, 2561, 3118
ApeKI	GCWGC	8 cut(s)	254, 541, 1019, 1366, 1397, 1793, 2395, 2543
ApoI	RAATTY	6 cut(s)	189, 671, 786, 794, 1028, 2620
ArsI	GACNNNNNNTTYG	2 cut(s)	1592, 1624
Asp700I	GAANNNNTTC	1 cut(s)	463
AspLEI	GCGC	3 cut(s)	176, 1579, 1596
AspS9I	GGNCC	3 cut(s)	1000, 2356, 2561
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	7 cut(s)	105, 131, 176, 662, 1130, 1544, 2654
AsuII	TTCGAA	2 cut(s)	344, 625
AsuNHI	GCTAGC	1 cut(s)	2026
AvaI	CYCGRG	2 cut(s)	2780, 3032
AvaII	GGWCC	2 cut(s)	1000, 2356
BaeGI	GKGCMC	1 cut(s)	2014
BanII	GRGCYC	4 cut(s)	205, 825, 1639, 1977
BauI	CACGAG	1 cut(s)	1401
BbsI	GAAGAC	5 cut(s)	411, 477, 1086, 1843, 2768
Bbv12I	GWGCWC	4 cut(s)	205, 825, 1977, 2416
BbvI	GCAGC	8 cut(s)	266, 553, 1031, 1378, 1384, 1805, 2382, 2530
BceAI	ACGGC	2 cut(s)	1865, 2244
BciT130I	CCWGG	7 cut(s)	25, 117, 219, 1731, 1860, 2088, 2205
BciVI	GTATCC	1 cut(s)	1752
BclI	TGATCA	6 cut(s)	301, 886, 904, 1231, 2644, 2761
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	1057
BcuI	ACTAGT	1 cut(s)	2983
BfaI	CTAG	8 cut(s)	53, 198, 536, 719, 2027, 2118, 2295, 2984
BfmI	CTRYAG	2 cut(s)	639, 2876
BfrI	CTTAAG	1 cut(s)	664
BfuI	GTATCC	1 cut(s)	1752
BglII	AGATCT	1 cut(s)	1540
BisI	GCNGC	9 cut(s)	255, 542, 1020, 1367, 1383, 1398, 1794, 2396, 2544
BlsI	GCNGC	9 cut(s)	256, 543, 1021, 1368, 1384, 1399, 1795, 2397, 2545
BmcAI	AGTACT	1 cut(s)	717
Bme1390I	CCNGG	8 cut(s)	25, 117, 208, 219, 1731, 1860, 2088, 2205
Bme18I	GGWCC	2 cut(s)	1000, 2356
BmeT110I	CYCGRG	2 cut(s)	2780, 3032
BmgT120I	GGNCC	3 cut(s)	1000, 2356, 2561
BmiI	GGNNCC	4 cut(s)	955, 1727, 1830, 2358
BmrFI	CCNGG	8 cut(s)	25, 117, 208, 219, 1731, 1860, 2088, 2205
BmsI	GCATC	6 cut(s)	249, 868, 1112, 1669, 2917, 3076
BmtI	GCTAGC	1 cut(s)	2030
BpiI	GAAGAC	5 cut(s)	411, 477, 1086, 1843, 2768
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
BpmI	CTGGAG	1 cut(s)	240
Bpu14I	TTCGAA	2 cut(s)	344, 625
BpuEI	CTTGAG	3 cut(s)	1140, 1395, 3056
BpuMI	CCSGG	1 cut(s)	208
Bsa29I	ATCGAT	1 cut(s)	2061
BsaAI	YACGTR	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	1057
BsaJI	CCNNGG	8 cut(s)	24, 206, 217, 1674, 1729, 1858, 2204, 2583
BsaWI	WCCGGW	2 cut(s)	161, 350
BsaXI	ACNNNNNCTCC	4 cut(s)	902, 932, 2504, 2534
Bse1I	ACTGG	4 cut(s)	1665, 2185, 2199, 3114
Bse3DI	GCAATG	4 cut(s)	16, 99, 2619, 2649
BseBI	CCWGG	7 cut(s)	25, 117, 219, 1731, 1860, 2088, 2205
BseCI	ATCGAT	1 cut(s)	2061
BseDI	CCNNGG	8 cut(s)	24, 206, 217, 1674, 1729, 1858, 2204, 2583
BseMI	GCAATG	4 cut(s)	16, 99, 2619, 2649
BseMII	CTCAG	4 cut(s)	480, 1068, 1467, 2963
BseNI	ACTGG	4 cut(s)	1665, 2185, 2199, 3114
BseSI	GKGCMC	1 cut(s)	2014
BseXI	GCAGC	8 cut(s)	266, 553, 1031, 1378, 1384, 1805, 2382, 2530
BseYI	CCCAGC	1 cut(s)	1166
BsgI	GTGCAG	3 cut(s)	98, 549, 1752
Bsh1236I	CGCG	4 cut(s)	174, 176, 1932, 2813
BshFI	GGCC	4 cut(s)	369, 1642, 2563, 3120
BshVI	ATCGAT	1 cut(s)	2061
BsiHKAI	GWGCWC	4 cut(s)	205, 825, 1977, 2416
BsiHKCI	CYCGRG	2 cut(s)	2780, 3032
BsiSI	CCGG	4 cut(s)	162, 208, 351, 875
BslFI	GGGAC	1 cut(s)	959
BsmAI	GTCTC	1 cut(s)	1057
BsmFI	GGGAC	1 cut(s)	959
BsmI	GAATGC	3 cut(s)	149, 876, 1515
BsnI	GGCC	4 cut(s)	369, 1642, 2563, 3120
Bso31I	GGTCTC	1 cut(s)	1057
BsoBI	CYCGRG	2 cut(s)	2780, 3032
Bsp119I	TTCGAA	2 cut(s)	344, 625
Bsp1286I	GDGCHC	6 cut(s)	205, 825, 1639, 1977, 2014, 2416
Bsp1407I	TGTACA	2 cut(s)	931, 2223
Bsp19I	CCATGG	1 cut(s)	1674
BspACI	CCGC	8 cut(s)	147, 172, 957, 1382, 1930, 2218, 2363, 2578
BspANI	GGCC	4 cut(s)	369, 1642, 2563, 3120
BspCNI	CTCAG	4 cut(s)	481, 1067, 1468, 2962
BspDI	ATCGAT	1 cut(s)	2061
BspFNI	CGCG	4 cut(s)	174, 176, 1932, 2813
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	4 cut(s)	955, 1727, 1830, 2358
BspOI	GCTAGC	1 cut(s)	2030
BspPI	GGATC	4 cut(s)	1921, 2078, 2468, 2896
BspT104I	TTCGAA	2 cut(s)	344, 625
BspTI	CTTAAG	1 cut(s)	664
BspTNI	GGTCTC	1 cut(s)	1057
BsrDI	GCAATG	4 cut(s)	16, 99, 2619, 2649
BsrGI	TGTACA	2 cut(s)	931, 2223
BsrI	ACTGG	4 cut(s)	1665, 2185, 2199, 3114
BssECI	CCNNGG	8 cut(s)	24, 206, 217, 1674, 1729, 1858, 2204, 2583
BssSI	CACGAG	1 cut(s)	1401
BssT1I	CCWWGG	2 cut(s)	1674, 2583
Bst2BI	CACGAG	1 cut(s)	1401
Bst2UI	CCWGG	7 cut(s)	25, 117, 219, 1731, 1860, 2088, 2205
Bst4CI	ACNGT	6 cut(s)	939, 1556, 1807, 2266, 2902, 2920
Bst6I	CTCTTC	7 cut(s)	492, 609, 622, 908, 1369, 1881, 2309
BstAFI	CTTAAG	1 cut(s)	664
BstAUI	TGTACA	2 cut(s)	931, 2223
BstBAI	YACGTR	1 cut(s)	512
BstBI	TTCGAA	2 cut(s)	344, 625
BstC8I	GCNNGC	2 cut(s)	1143, 2028
BstDEI	CTNAG	8 cut(s)	489, 548, 1054, 1476, 2157, 2389, 2949, 2997
BstDSI	CCRYGG	1 cut(s)	1674
BstENI	CCTNNNNNAGG	2 cut(s)	293, 2121
BstFNI	CGCG	4 cut(s)	174, 176, 1932, 2813
BstHHI	GCGC	3 cut(s)	176, 1579, 1596
BstMAI	GTCTC	1 cut(s)	1057
BstMWI	GCNNNNNNNGC	9 cut(s)	254, 586, 1406, 1525, 1534, 1775, 2146, 2411, 2609
BstNI	CCWGG	7 cut(s)	25, 117, 219, 1731, 1860, 2088, 2205
BstNSI	RCATGY	3 cut(s)	1145, 1823, 3010
BstSCI	CCNGG	8 cut(s)	23, 115, 206, 217, 1729, 1858, 2086, 2203
BstSFI	CTRYAG	2 cut(s)	639, 2876
BstSLI	GKGCMC	1 cut(s)	2014
BstUI	CGCG	4 cut(s)	174, 176, 1932, 2813
BstV1I	GCAGC	8 cut(s)	266, 553, 1031, 1378, 1384, 1805, 2382, 2530
BstV2I	GAAGAC	5 cut(s)	411, 477, 1086, 1843, 2768
BstX2I	RGATCY	2 cut(s)	1540, 1926
BstYI	RGATCY	2 cut(s)	1540, 1926
Bsu15I	ATCGAT	1 cut(s)	2061
BsuI	GTATCC	1 cut(s)	1752
BsuRI	GGCC	4 cut(s)	369, 1642, 2563, 3120
BsuTUI	ATCGAT	1 cut(s)	2061
BtgI	CCRYGG	1 cut(s)	1674
BtgZI	GCGATG	1 cut(s)	272
BtsI	GCAGTG	1 cut(s)	2865
BtsIMutI	CAGTG	7 cut(s)	486, 774, 1561, 1672, 2865, 2907, 3121
Cac8I	GCNNGC	2 cut(s)	1143, 2028
CaiI	CAGNNNCTG	1 cut(s)	2939
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	3 cut(s)	176, 1579, 1596
Cfr13I	GGNCC	3 cut(s)	1000, 2356, 2561
ClaI	ATCGAT	1 cut(s)	2061
CseI	GACGC	1 cut(s)	1799
CsiI	ACCWGGT	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	3097, 3132
DdeI	CTNAG	8 cut(s)	489, 548, 1054, 1476, 2157, 2389, 2949, 2997
DraIII	CACNNNGTG	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	3118
Eam1104I	CTCTTC	7 cut(s)	492, 609, 622, 908, 1369, 1881, 2309
EarI	CTCTTC	7 cut(s)	492, 609, 622, 908, 1369, 1881, 2309
EciI	GGCGGA	1 cut(s)	2352
Ecl136II	GAGCTC	3 cut(s)	203, 823, 1975
Eco130I	CCWWGG	2 cut(s)	1674, 2583
Eco24I	GRGCYC	4 cut(s)	205, 825, 1639, 1977
Eco31I	GGTCTC	1 cut(s)	1057
Eco32I	GATATC	2 cut(s)	1662, 2755
Eco47I	GGWCC	2 cut(s)	1000, 2356
Eco53kI	GAGCTC	3 cut(s)	203, 823, 1975
Eco57I	CTGAAG	9 cut(s)	516, 1175, 1670, 1705, 1794, 2025, 2148, 2391, 2681
Eco88I	CYCGRG	2 cut(s)	2780, 3032
EcoICRI	GAGCTC	3 cut(s)	203, 823, 1975
EcoNI	CCTNNNNNAGG	2 cut(s)	293, 2121
EcoRII	CCWGG	7 cut(s)	23, 115, 217, 1729, 1858, 2086, 2203
EcoRV	GATATC	2 cut(s)	1662, 2755
EcoT14I	CCWWGG	2 cut(s)	1674, 2583
EcoT22I	ATGCAT	2 cut(s)	883, 1143
EcoT38I	GRGCYC	4 cut(s)	205, 825, 1639, 1977
ErhI	CCWWGG	2 cut(s)	1674, 2583
FaqI	GGGAC	1 cut(s)	959
FauI	CCCGC	2 cut(s)	140, 179
FauNDI	CATATG	2 cut(s)	883, 1185
FbaI	TGATCA	6 cut(s)	301, 886, 904, 1231, 2644, 2761
FblI	GTMKAC	2 cut(s)	642, 2449
Fnu4HI	GCNGC	9 cut(s)	255, 542, 1020, 1367, 1383, 1398, 1794, 2396, 2544
FriOI	GRGCYC	4 cut(s)	205, 825, 1639, 1977
Fsp4HI	GCNGC	9 cut(s)	255, 542, 1020, 1367, 1383, 1398, 1794, 2396, 2544
FspBI	CTAG	8 cut(s)	53, 198, 536, 719, 2027, 2118, 2295, 2984
FspI	TGCGCA	1 cut(s)	1595
GlaI	GCGC	3 cut(s)	175, 1578, 1595
GluI	GCNGC	9 cut(s)	255, 542, 1020, 1367, 1383, 1398, 1794, 2396, 2544
GsaI	CCCAGC	1 cut(s)	1170
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	4 cut(s)	369, 1642, 2563, 3120
HapII	CCGG	4 cut(s)	162, 208, 351, 875
HgaI	GACGC	1 cut(s)	1799
HhaI	GCGC	3 cut(s)	176, 1579, 1596
Hin6I	GCGC	3 cut(s)	174, 1577, 1594
HinP1I	GCGC	3 cut(s)	174, 1577, 1594
HincII	GTYRAC	1 cut(s)	1750
HindII	GTYRAC	1 cut(s)	1750
HindIII	AAGCTT	2 cut(s)	990, 1343
HinfI	GANTC	8 cut(s)	226, 491, 659, 1160, 2132, 2170, 2317, 2825
HpaII	CCGG	4 cut(s)	162, 208, 351, 875
HphI	GGTGA	7 cut(s)	105, 131, 176, 662, 1130, 1544, 2654
Hpy166II	GTNNAC	9 cut(s)	122, 643, 839, 1427, 1750, 2226, 2450, 2599, 2923
Hpy8I	GTNNAC	9 cut(s)	122, 643, 839, 1427, 1750, 2226, 2450, 2599, 2923
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	8 cut(s)	1615, 1731, 1819, 1973, 2000, 2376, 2574, 2674
HpyCH4III	ACNGT	6 cut(s)	939, 1556, 1807, 2266, 2902, 2920
HpyCH4IV	ACGT	5 cut(s)	511, 1472, 2628, 2799, 3078
HpyF10VI	GCNNNNNNNGC	9 cut(s)	254, 586, 1406, 1525, 1534, 1775, 2146, 2411, 2609
HpyF3I	CTNAG	8 cut(s)	489, 548, 1054, 1476, 2157, 2389, 2949, 2997
HpySE526I	ACGT	5 cut(s)	511, 1472, 2628, 2799, 3078
HspAI	GCGC	3 cut(s)	174, 1577, 1594
Ksp22I	TGATCA	6 cut(s)	301, 886, 904, 1231, 2644, 2761
LmnI	GCTCC	6 cut(s)	6, 208, 1828, 1980, 2525, 3058
Lsp1109I	GCAGC	8 cut(s)	266, 553, 1031, 1378, 1384, 1805, 2382, 2530
LweI	GCATC	6 cut(s)	249, 868, 1112, 1669, 2917, 3076
MabI	ACCWGGT	1 cut(s)	115
MaeI	CTAG	8 cut(s)	53, 198, 536, 719, 2027, 2118, 2295, 2984
MaeII	ACGT	5 cut(s)	511, 1472, 2628, 2799, 3078
MaeIII	GTNAC	6 cut(s)	512, 1334, 1550, 2143, 2213, 3016
MfeI	CAATTG	2 cut(s)	398, 2538
MflI	RGATCY	2 cut(s)	1540, 1926
MhlI	GDGCHC	6 cut(s)	205, 825, 1639, 1977, 2014, 2416
MlyI	GAGTC	3 cut(s)	500, 2164, 2326
MmeI	TCCRAC	3 cut(s)	2611, 2748, 2802
Mph1103I	ATGCAT	2 cut(s)	883, 1143
MroXI	GAANNNNTTC	1 cut(s)	463
MseI	TTAA	5 cut(s)	665, 1025, 1242, 2235, 3026
MslI	CAYNNNNRTG	1 cut(s)	2704
MspCI	CTTAAG	1 cut(s)	664
MspI	CCGG	4 cut(s)	162, 208, 351, 875
MspR9I	CCNGG	8 cut(s)	25, 117, 208, 219, 1731, 1860, 2088, 2205
MunI	CAATTG	2 cut(s)	398, 2538
Mva1269I	GAATGC	3 cut(s)	149, 876, 1515
MvaI	CCWGG	7 cut(s)	25, 117, 219, 1731, 1860, 2088, 2205
MvnI	CGCG	4 cut(s)	174, 176, 1932, 2813
MwoI	GCNNNNNNNGC	9 cut(s)	254, 586, 1406, 1525, 1534, 1775, 2146, 2411, 2609
NciI	CCSGG	1 cut(s)	208
NcoI	CCATGG	1 cut(s)	1674
NdeI	CATATG	2 cut(s)	883, 1185
NheI	GCTAGC	1 cut(s)	2026
NlaIV	GGNNCC	4 cut(s)	955, 1727, 1830, 2358
NmeAIII	GCCGAG	2 cut(s)	1618, 2985
NmuCI	GTSAC	1 cut(s)	512
NsbI	TGCGCA	1 cut(s)	1595
NsiI	ATGCAT	2 cut(s)	883, 1143
NspI	RCATGY	3 cut(s)	1145, 1823, 3010
NspV	TTCGAA	2 cut(s)	344, 625
OliI	CACNNNNGTG	1 cut(s)	2704
PaeI	GCATGC	1 cut(s)	1145
PaeR7I	CTCGAG	1 cut(s)	2780
PagI	TCATGA	1 cut(s)	304
PciI	ACATGT	1 cut(s)	1819
PcsI	WCGNNNNNNNCGW	1 cut(s)	2182
PctI	GAATGC	3 cut(s)	149, 876, 1515
PdmI	GAANNNNTTC	1 cut(s)	463
PfeI	GAWTC	5 cut(s)	226, 659, 1160, 2132, 2825
PflMI	CCANNNNNTGG	1 cut(s)	2939
PkrI	GCNGC	9 cut(s)	256, 543, 1021, 1368, 1384, 1399, 1795, 2397, 2545
PleI	GAGTC	3 cut(s)	499, 2164, 2325
PpsI	GAGTC	3 cut(s)	499, 2164, 2325
Ppu21I	YACGTR	1 cut(s)	512
PscI	ACATGT	1 cut(s)	1819
PsiI	TTATAA	1 cut(s)	2381
Psp124BI	GAGCTC	3 cut(s)	205, 825, 1977
Psp6I	CCWGG	7 cut(s)	23, 115, 217, 1729, 1858, 2086, 2203
PspFI	CCCAGC	1 cut(s)	1166
PspGI	CCWGG	7 cut(s)	23, 115, 217, 1729, 1858, 2086, 2203
PspN4I	GGNNCC	4 cut(s)	955, 1727, 1830, 2358
PspPI	GGNCC	3 cut(s)	1000, 2356, 2561
PstNI	CAGNNNCTG	1 cut(s)	2939
PsuI	RGATCY	2 cut(s)	1540, 1926
RseI	CAYNNNNRTG	1 cut(s)	2704
SacI	GAGCTC	3 cut(s)	205, 825, 1977
SaqAI	TTAA	5 cut(s)	665, 1025, 1242, 2235, 3026
SatI	GCNGC	9 cut(s)	255, 542, 1020, 1367, 1383, 1398, 1794, 2396, 2544
Sau96I	GGNCC	3 cut(s)	1000, 2356, 2561
ScaI	AGTACT	1 cut(s)	717
SchI	GAGTC	3 cut(s)	500, 2164, 2326
ScrFI	CCNGG	8 cut(s)	25, 117, 208, 219, 1731, 1860, 2088, 2205
SduI	GDGCHC	6 cut(s)	205, 825, 1639, 1977, 2014, 2416
SexAI	ACCWGGT	1 cut(s)	115
SfaNI	GCATC	6 cut(s)	249, 868, 1112, 1669, 2917, 3076
SfcI	CTRYAG	2 cut(s)	639, 2876
Sfr274I	CTCGAG	1 cut(s)	2780
SfuI	TTCGAA	2 cut(s)	344, 625
SinI	GGWCC	2 cut(s)	1000, 2356
SlaI	CTCGAG	1 cut(s)	2780
SmiMI	CAYNNNNRTG	1 cut(s)	2704
SmlI	CTYRAG	5 cut(s)	664, 1155, 1410, 2780, 3071
SmoI	CTYRAG	5 cut(s)	664, 1155, 1410, 2780, 3071
SpeI	ACTAGT	1 cut(s)	2983
SphI	GCATGC	1 cut(s)	1145
SsiI	CCGC	8 cut(s)	147, 172, 957, 1382, 1930, 2218, 2363, 2578
SspI	AATATT	2 cut(s)	1989, 2038
SspMI	CTAG	8 cut(s)	53, 198, 536, 719, 2027, 2118, 2295, 2984
SstI	GAGCTC	3 cut(s)	205, 825, 1977
StyD4I	CCNGG	8 cut(s)	23, 115, 206, 217, 1729, 1858, 2086, 2203
StyI	CCWWGG	2 cut(s)	1674, 2583
TaaI	ACNGT	6 cut(s)	939, 1556, 1807, 2266, 2902, 2920
TaiI	ACGT	5 cut(s)	514, 1475, 2631, 2802, 3081
TaqI	TCGA	9 cut(s)	344, 625, 1372, 1456, 2061, 2185, 2486, 2781, 2896
TatI	WGTACW	4 cut(s)	715, 836, 931, 2223
TauI	GCSGC	1 cut(s)	1385
TfiI	GAWTC	5 cut(s)	226, 659, 1160, 2132, 2825
Tru1I	TTAA	5 cut(s)	665, 1025, 1242, 2235, 3026
Tru9I	TTAA	5 cut(s)	665, 1025, 1242, 2235, 3026
TscAI	CASTG	7 cut(s)	493, 781, 1561, 1672, 2872, 2907, 3121
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	8 cut(s)	254, 541, 1019, 1366, 1397, 1793, 2395, 2543
Tsp45I	GTSAC	1 cut(s)	512
TspGWI	ACGGA	4 cut(s)	119, 583, 2467, 2747
TspRI	CASTG	7 cut(s)	493, 781, 1561, 1672, 2872, 2907, 3121
Van91I	CCANNNNNTGG	1 cut(s)	2939
Vha464I	CTTAAG	1 cut(s)	664
VpaK11BI	GGWCC	2 cut(s)	1000, 2356
XagI	CCTNNNNNAGG	2 cut(s)	293, 2121
XapI	RAATTY	6 cut(s)	189, 671, 786, 794, 1028, 2620
XceI	RCATGY	3 cut(s)	1145, 1823, 3010
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1672
XhoI	CTCGAG	1 cut(s)	2780
XmiI	GTMKAC	2 cut(s)	642, 2449
XmnI	GAANNNNTTC	1 cut(s)	463
XspI	CTAG	8 cut(s)	53, 198, 536, 719, 2027, 2118, 2295, 2984
ZrmI	AGTACT	1 cut(s)	717
Zsp2I	ATGCAT	2 cut(s)	883, 1143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.