Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000463

Physical Location & Seq

Genomic Coordinates Forward (+)

63491585 .. 63501180

Gene Structure 9596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGGAGCGAGAGCAATTTGAAGACGTGGGTTTCCGATAAGCTGATGACATTGCTCGGTTATTCTCAGCCGGCTGTTGTTCAGTACATTATTGGATTAACTAAACAAGCAAAGTCTCCGGCTGATGTGGTGGAGAAGCTTTTAGATTCCGGGTGGTCCTCCTCGTCTGATACACGTGAATTTGCTGAAGAAATATTCTCCAGAGTGCCCCACAAATCATCCGGACTGAATGTTTATCAGAGACAAGAGAGGGAGGCTACAATGCTGGTGAGAAAGCAGAAGACATATGCTCTATTGGATGCAGATGATGACGACGATGATGGTGATAAGTCTTCTGTTCCAGTAGTTTCAGAGTCCAGGAAAAGTGATTCCCATAAGAAACGGTTCAGGAGGAAGGCCTCAAGTCAAGACGATGAAGATGATGAGGTGATTGTACACCAGGAAGAAGTGAGGCGGGTTAAAAGACGAACTTCCCCAGATGAAGATGATGGTTCAGAGTCCGAAGAAGAAAGATTGCGTGATCAAAGAGAGCGGGAGCAATTAGAGCGCAATATAAGGGAGAGGGACACAGCAGCTACACGAAAGTTAACAGAGAGAAAGTTATCAAAAAAAGAGGAAGAGGAGGCTATTCGGAGAAACAAGGCTTCAGAGCGAAATGAAACTGAAGATTTAAGACTAGTTTCAAGACAAGAATATTTAAAGAAAAGAGAGCAGAAGAAACTGGAGGAAATCAGAGATGAAATAGAAGATGAGCAATACTTATTTGAGCATGTGAAGCTCACTGAATTGGAACGTCGTGAATTAAGTTACAAGAAGCAAATACTTGAGGCTGTGACGAAGCGGGCAGTTGAGGACGAGAATCAAAATGAGTACAGGATTCCTGATGCCTATGATGTGGAGGGGGTGTCAATCAGGAGAAGAGATTTTCTGTGGCCATGCAACGCTACAGGGACCTGGCTGGGGATAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

323

Amino Acids

38.02

Weight (kDa)

5.33

Isoelectric Point (pI)

68.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca	FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica	MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica	Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis	pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis	RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata	RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora	Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa	Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha	Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana	Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	532
AccIII	TCCGGA	1 cut(s)	221
AciI	CCGC	3 cut(s)	454, 532, 841
AcoI	YGGCCR	1 cut(s)	932
AcsI	RAATTY	1 cut(s)	179
AcuI	CTGAAG	3 cut(s)	207, 630, 684
AcvI	CACGTG	1 cut(s)	176
AfaI	GTAC	3 cut(s)	86, 435, 872
AfiI	CCNNNNNNNGG	1 cut(s)	960
AflIII	ACRYGT	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	22, 684
AhlI	ACTAGT	1 cut(s)	676
AjiI	CACGTC	1 cut(s)	27
AjnI	CCWGG	3 cut(s)	356, 438, 953
AluBI	AGCT	4 cut(s)	43, 139, 575, 778
AluI	AGCT	4 cut(s)	43, 139, 575, 778
Alw26I	GTCTC	2 cut(s)	120, 235
Aor13HI	TCCGGA	1 cut(s)	221
AoxI	GGCC	2 cut(s)	396, 932
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	549
AspS9I	GGNCC	2 cut(s)	156, 951
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	3 cut(s)	280, 335, 439
AvaII	GGWCC	2 cut(s)	156, 951
BaeGI	GKGCMC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	934
BbrPI	CACGTG	1 cut(s)	176
BbsI	GAAGAC	3 cut(s)	29, 287, 324
BbvI	GCAGC	1 cut(s)	584
BccI	CCATC	2 cut(s)	314, 482
BciT130I	CCWGG	3 cut(s)	358, 440, 955
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	120, 235
BcuI	ACTAGT	1 cut(s)	676
BfaI	CTAG	1 cut(s)	677
BfmI	CTRYAG	1 cut(s)	945
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
Bme1390I	CCNGG	4 cut(s)	151, 358, 440, 955
Bme18I	GGWCC	2 cut(s)	156, 951
BmgBI	CACGTC	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	156, 951
BmiI	GGNNCC	1 cut(s)	952
BmrFI	CCNGG	4 cut(s)	151, 358, 440, 955
BmsI	GCATC	2 cut(s)	289, 874
BpiI	GAAGAC	3 cut(s)	29, 287, 324
BpmI	CTGGAG	2 cut(s)	184, 743
BpuEI	CTTGAG	2 cut(s)	385, 845
BpuMI	CCSGG	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	176
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	890, 920
Bsc4I	CCNNNNNNNGG	1 cut(s)	960
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	341, 726
Bse3DI	GCAATG	1 cut(s)	50
BseAI	TCCGGA	1 cut(s)	221
BseBI	CCWGG	3 cut(s)	358, 440, 955
BseGI	GGATG	2 cut(s)	218, 304
BseLI	CCNNNNNNNGG	1 cut(s)	960
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	2 cut(s)	341, 726
BseRI	GAGGAG	2 cut(s)	151, 635
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	584
BseYI	CCCAGC	1 cut(s)	958
BshFI	GGCC	2 cut(s)	398, 934
BsiSI	CCGG	4 cut(s)	71, 119, 150, 222
BslFI	GGGAC	2 cut(s)	578, 964
BslI	CCNNNNNNNGG	1 cut(s)	960
BsmAI	GTCTC	2 cut(s)	120, 235
BsmFI	GGGAC	2 cut(s)	578, 964
BsnI	GGCC	2 cut(s)	398, 934
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp13I	TCCGGA	1 cut(s)	221
Bsp1407I	TGTACA	1 cut(s)	433
Bsp143I	GATC	1 cut(s)	520
BspACI	CCGC	3 cut(s)	454, 532, 841
BspANI	GGCC	2 cut(s)	398, 934
BspCNI	CTCAG	1 cut(s)	79
BspEI	TCCGGA	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	952
BsrBI	CCGCTC	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	433
BsrI	ACTGG	2 cut(s)	341, 726
BssAI	RCCGGY	1 cut(s)	70
BssMI	GATC	1 cut(s)	520
Bst2UI	CCWGG	3 cut(s)	358, 440, 955
Bst4CI	ACNGT	1 cut(s)	384
Bst6I	CTCTTC	2 cut(s)	612, 913
BstAUI	TGTACA	1 cut(s)	433
BstBAI	YACGTR	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	72, 843
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	218, 304
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	1 cut(s)	523
BstMAI	GTCTC	2 cut(s)	120, 235
BstMBI	GATC	1 cut(s)	520
BstMWI	GCNNNNNNNGC	2 cut(s)	544, 775
BstNI	CCWGG	3 cut(s)	358, 440, 955
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	4 cut(s)	149, 356, 438, 953
BstSFI	CTRYAG	1 cut(s)	945
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	584
BstV2I	GAAGAC	3 cut(s)	29, 287, 324
BsuRI	GGCC	2 cut(s)	398, 934
BtrI	CACGTC	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	218, 304
BtsIMutI	CAGTG	1 cut(s)	780
Cac8I	GCNNGC	2 cut(s)	72, 843
CfoI	GCGC	1 cut(s)	549
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	156, 951
Csp6I	GTAC	3 cut(s)	85, 434, 871
CviAII	CATG	2 cut(s)	770, 936
CviQI	GTAC	3 cut(s)	85, 434, 871
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	1 cut(s)	522
DpnII	GATC	1 cut(s)	520
DraI	TTTAAA	1 cut(s)	699
EaeI	YGGCCR	1 cut(s)	932
Eam1104I	CTCTTC	2 cut(s)	612, 913
EarI	CTCTTC	2 cut(s)	612, 913
Eco147I	AGGCCT	1 cut(s)	398
Eco47I	GGWCC	2 cut(s)	156, 951
Eco57I	CTGAAG	3 cut(s)	207, 630, 684
Eco72I	CACGTG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	951
EcoRII	CCWGG	3 cut(s)	356, 438, 953
FaeI	CATG	2 cut(s)	773, 939
FaiI	YATR	7 cut(s)	286, 288, 375, 554, 771, 891, 937
FalI	AAGNNNNNCTT	2 cut(s)	454, 486
FaqI	GGGAC	2 cut(s)	578, 964
FatI	CATG	2 cut(s)	769, 935
FauI	CCCGC	3 cut(s)	447, 525, 834
FauNDI	CATATG	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	1 cut(s)	573
FokI	GGATG	2 cut(s)	205, 311
Fsp4HI	GCNGC	1 cut(s)	573
FspBI	CTAG	1 cut(s)	677
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	1 cut(s)	573
GsaI	CCCAGC	1 cut(s)	962
GsuI	CTGGAG	2 cut(s)	184, 743
HaeIII	GGCC	2 cut(s)	398, 934
HapII	CCGG	4 cut(s)	71, 119, 150, 222
HhaI	GCGC	1 cut(s)	549
Hin1II	CATG	2 cut(s)	773, 939
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	6 cut(s)	146, 353, 368, 497, 859, 877
HpaI	GTTAAC	1 cut(s)	588
HpaII	CCGG	4 cut(s)	71, 119, 150, 222
HphI	GGTGA	3 cut(s)	280, 335, 439
Hpy166II	GTNNAC	2 cut(s)	436, 588
Hpy188I	TCNGA	9 cut(s)	37, 169, 240, 352, 496, 502, 633, 649, 734
Hpy188III	TCNNGA	8 cut(s)	201, 222, 388, 407, 684, 797, 881, 913
Hpy8I	GTNNAC	2 cut(s)	436, 588
Hpy99I	CGWCG	2 cut(s)	317, 798
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	1 cut(s)	384
HpyCH4IV	ACGT	3 cut(s)	26, 175, 793
HpyCH4V	TGCA	2 cut(s)	302, 939
HpyF10VI	GCNNNNNNNGC	2 cut(s)	544, 775
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	3 cut(s)	26, 175, 793
Hsp92II	CATG	2 cut(s)	773, 939
HspAI	GCGC	1 cut(s)	547
Kpn2I	TCCGGA	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	70
KroNI	GCCGGC	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	520
KspAI	GTTAAC	1 cut(s)	588
Kzo9I	GATC	1 cut(s)	520
LmnI	GCTCC	2 cut(s)	6, 535
Lsp1109I	GCAGC	1 cut(s)	584
LweI	GCATC	2 cut(s)	289, 874
MaeI	CTAG	1 cut(s)	677
MaeII	ACGT	3 cut(s)	26, 175, 793
MaeIII	GTNAC	2 cut(s)	806, 832
MalI	GATC	1 cut(s)	522
MbiI	CCGCTC	1 cut(s)	532
MboI	GATC	1 cut(s)	520
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	934
MluCI	AATT	5 cut(s)	16, 179, 539, 785, 800
MluNI	TGGCCA	1 cut(s)	934
MlyI	GAGTC	2 cut(s)	362, 506
Mox20I	TGGCCA	1 cut(s)	934
MroI	TCCGGA	1 cut(s)	221
MroNI	GCCGGC	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	934
MseI	TTAA	6 cut(s)	98, 459, 587, 671, 698, 803
Msp20I	TGGCCA	1 cut(s)	934
MspI	CCGG	4 cut(s)	71, 119, 150, 222
MspR9I	CCNGG	4 cut(s)	151, 358, 440, 955
MvaI	CCWGG	3 cut(s)	358, 440, 955
MwoI	GCNNNNNNNGC	2 cut(s)	544, 775
NaeI	GCCGGC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	151
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	1 cut(s)	520
NgoMIV	GCCGGC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	773, 939
NlaIV	GGNNCC	1 cut(s)	952
NmuCI	GTSAC	1 cut(s)	832
NspI	RCATGY	1 cut(s)	773
PceI	AGGCCT	1 cut(s)	398
PdiI	GCCGGC	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	4 cut(s)	146, 368, 859, 877
PfoI	TCCNGGA	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	574
PleI	GAGTC	2 cut(s)	361, 505
PmaCI	CACGTG	1 cut(s)	176
PmlI	CACGTG	1 cut(s)	176
PpsI	GAGTC	2 cut(s)	361, 505
Ppu21I	YACGTR	1 cut(s)	176
PpuMI	RGGWCCY	1 cut(s)	951
Psp5II	RGGWCCY	1 cut(s)	951
Psp6I	CCWGG	3 cut(s)	356, 438, 953
PspCI	CACGTG	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	958
PspGI	CCWGG	3 cut(s)	356, 438, 953
PspN4I	GGNNCC	1 cut(s)	952
PspPI	GGNCC	2 cut(s)	156, 951
PspPPI	RGGWCCY	1 cut(s)	951
RsaI	GTAC	3 cut(s)	86, 435, 872
RsaNI	GTAC	3 cut(s)	85, 434, 871
SaqAI	TTAA	6 cut(s)	98, 459, 587, 671, 698, 803
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	1 cut(s)	520
Sau96I	GGNCC	2 cut(s)	156, 951
SchI	GAGTC	2 cut(s)	362, 506
ScrFI	CCNGG	4 cut(s)	151, 358, 440, 955
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	9 cut(s)	29, 45, 141, 178, 429, 577, 780, 796, 956
SfaNI	GCATC	2 cut(s)	289, 874
SfcI	CTRYAG	1 cut(s)	945
SinI	GGWCC	2 cut(s)	156, 951
SmlI	CTYRAG	2 cut(s)	400, 824
SmoI	CTYRAG	2 cut(s)	400, 824
SpeI	ACTAGT	1 cut(s)	676
Sse9I	AATT	5 cut(s)	16, 179, 539, 785, 800
SseBI	AGGCCT	1 cut(s)	398
SsiI	CCGC	3 cut(s)	454, 532, 841
SspI	AATATT	2 cut(s)	195, 695
SspMI	CTAG	1 cut(s)	677
StuI	AGGCCT	1 cut(s)	398
StyD4I	CCNGG	4 cut(s)	149, 356, 438, 953
TaaI	ACNGT	1 cut(s)	384
TaiI	ACGT	3 cut(s)	29, 178, 796
TasI	AATT	5 cut(s)	16, 179, 539, 785, 800
TatI	WGTACW	3 cut(s)	84, 433, 870
TfiI	GAWTC	4 cut(s)	146, 368, 859, 877
Tru1I	TTAA	6 cut(s)	98, 459, 587, 671, 698, 803
Tru9I	TTAA	6 cut(s)	98, 459, 587, 671, 698, 803
TscAI	CASTG	1 cut(s)	787
TseFI	GTSAC	1 cut(s)	832
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	1 cut(s)	832
TspDTI	ATGAA	4 cut(s)	429, 495, 672, 753
TspRI	CASTG	1 cut(s)	787
VpaK11BI	GGWCC	2 cut(s)	156, 951
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	1 cut(s)	773
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.