Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000463

Physical Location & Seq

Genomic Coordinates Forward (+)

6956044 .. 6956743

Gene Structure 700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1088100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCATACCCTGGAAGATGGCTATGAATTGGTGGATTTAGTAGTTACACAAACCCTGGTACTTCATGTGATGGAAGCACCTGGTGACATATTGGTATTTTTGCCTGGTCAACAAGAAATCGAAACCTTTGACCATTCGTTGAAGCAAATAATTATTGCTCATGGTCATACCCAGTTGATTACATGCCCCATTAGTGCAGAAGTTTTGGAGCCAACACCTCAAGGGGTTAGGAAGGTTGTACTTGCAACAAGCCCGGCTGAAATTTCATGGCTAATGTTGAACAGTATTCAGTATTTCATTGACTCTGGTCTTTGCAAGATGAAGTCTTATGATCTGATGGCCGGGAAGGAGTTGGATCGAATGAGTCCCGTCTCGAAGGCGGAGGCAACGCAGAGGGCAGAGCTAGGGCTAGCGGGATCTACGTGCTACAGATATGGGTTTGTGGATCCTCCAGCTCCTGAAGCATTGGCACAAGCTCTGCAGCAGTTGATTAGGAGGGGAGTTTTAGATAATGATCTGGGTGAGTTGACTCAAGTTGGTAACCAGATGGCAGACACAGTTTCATTATCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

192

Amino Acids

20.91

Weight (kDa)

4.66

Isoelectric Point (pI)

39.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca	FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica	MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica	Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis	pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis	RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata	RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora	Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa	Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha	Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana	Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	380, 413
AclWI	GGATC	4 cut(s)	363, 424, 440, 453
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	261
AcuI	CTGAAG	1 cut(s)	480
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	2 cut(s)	60, 240
AgsI	TTSAA	2 cut(s)	142, 280
AjnI	CCWGG	4 cut(s)	9, 54, 79, 103
AluBI	AGCT	3 cut(s)	403, 455, 476
AluI	AGCT	3 cut(s)	403, 455, 476
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	4 cut(s)	363, 424, 440, 453
AlwNI	CAGNNNCTG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	1 cut(s)	481
ApoI	RAATTY	1 cut(s)	261
AsuC2I	CCSGG	2 cut(s)	254, 343
AsuHPI	GGTGA	2 cut(s)	95, 533
AsuNHI	GCTAGC	1 cut(s)	409
BamHI	GGATCC	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	493
BccI	CCATC	4 cut(s)	11, 64, 331, 541
BciT130I	CCWGG	4 cut(s)	11, 56, 81, 105
BcnI	CCSGG	2 cut(s)	254, 343
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	2 cut(s)	404, 410
BfmI	CTRYAG	2 cut(s)	427, 479
BisI	GCNGC	1 cut(s)	482
BlsI	GCNGC	1 cut(s)	483
Bme1390I	CCNGG	6 cut(s)	11, 56, 81, 105, 254, 343
BmiI	GGNNCC	2 cut(s)	210, 447
BmrFI	CCNGG	6 cut(s)	11, 56, 81, 105, 254, 343
BmrI	ACTGGG	1 cut(s)	166
BmtI	GCTAGC	1 cut(s)	413
BmuI	ACTGGG	1 cut(s)	166
BoxI	GACNNNNGTC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	435
BpuEI	CTTGAG	2 cut(s)	204, 516
BpuMI	CCSGG	2 cut(s)	254, 343
BsaAI	YACGTR	1 cut(s)	423
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	9, 54
Bse1I	ACTGG	1 cut(s)	172
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	4 cut(s)	11, 56, 81, 105
BseDI	CCNNGG	2 cut(s)	9, 54
BseJI	GATNNNNATC	1 cut(s)	513
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	493
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	254, 342
BslFI	GGGAC	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	376
BsmBI	CGTCTC	1 cut(s)	376
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	341
Bsp143I	GATC	5 cut(s)	331, 355, 416, 445, 514
BspACI	CCGC	2 cut(s)	380, 413
BspANI	GGCC	1 cut(s)	341
BspLI	GGNNCC	2 cut(s)	210, 447
BspMAI	CTGCAG	1 cut(s)	483
BspOI	GCTAGC	1 cut(s)	413
BspPI	GGATC	4 cut(s)	363, 424, 440, 453
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	9, 54
BssMI	GATC	5 cut(s)	331, 355, 416, 445, 514
Bst2UI	CCWGG	4 cut(s)	11, 56, 81, 105
Bst4CI	ACNGT	2 cut(s)	284, 559
BstBAI	YACGTR	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	411
BstEII	GGTNACC	1 cut(s)	539
BstKTI	GATC	5 cut(s)	334, 358, 419, 448, 517
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	5 cut(s)	331, 355, 416, 445, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	4 cut(s)	11, 56, 81, 105
BstNSI	RCATGY	1 cut(s)	186
BstPAI	GACNNNNGTC	1 cut(s)	306
BstPI	GGTNACC	1 cut(s)	539
BstSCI	CCNGG	6 cut(s)	9, 54, 79, 103, 252, 341
BstSFI	CTRYAG	2 cut(s)	427, 479
BstV1I	GCAGC	1 cut(s)	493
BstX2I	RGATCY	2 cut(s)	416, 445
BstYI	RGATCY	2 cut(s)	416, 445
BsuRI	GGCC	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	411
CaiI	CAGNNNCTG	1 cut(s)	458
CsiI	ACCWGGT	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	59, 239
CviAII	CATG	5 cut(s)	65, 161, 183, 267, 571
CviQI	GTAC	2 cut(s)	59, 239
DpnI	GATC	5 cut(s)	333, 357, 418, 447, 516
DpnII	GATC	5 cut(s)	331, 355, 416, 445, 514
DraIII	CACNNNGTG	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	480
Eco91I	GGTNACC	1 cut(s)	539
EcoO65I	GGTNACC	1 cut(s)	539
EcoRII	CCWGG	4 cut(s)	9, 54, 79, 103
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	376
FaeI	CATG	5 cut(s)	68, 164, 186, 270, 574
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	5 cut(s)	64, 160, 182, 266, 570
FauI	CCCGC	1 cut(s)	406
Fnu4HI	GCNGC	1 cut(s)	482
Fsp4HI	GCNGC	1 cut(s)	482
FspBI	CTAG	2 cut(s)	404, 410
GluI	GCNGC	1 cut(s)	482
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	2 cut(s)	254, 342
Hin1II	CATG	5 cut(s)	68, 164, 186, 270, 574
HincII	GTYRAC	2 cut(s)	110, 528
HindII	GTYRAC	2 cut(s)	110, 528
HinfI	GANTC	3 cut(s)	302, 364, 529
HpaII	CCGG	2 cut(s)	254, 342
HphI	GGTGA	2 cut(s)	95, 533
Hpy166II	GTNNAC	2 cut(s)	110, 528
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	2 cut(s)	373, 458
Hpy8I	GTNNAC	2 cut(s)	110, 528
HpyAV	CCTTC	3 cut(s)	226, 340, 370
HpyCH4III	ACNGT	2 cut(s)	284, 559
HpyCH4IV	ACGT	1 cut(s)	422
HpyCH4V	TGCA	5 cut(s)	4, 197, 245, 315, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpySE526I	ACGT	1 cut(s)	422
Hsp92II	CATG	5 cut(s)	68, 164, 186, 270, 574
Kzo9I	GATC	5 cut(s)	331, 355, 416, 445, 514
LmnI	GCTCC	2 cut(s)	208, 460
Lsp1109I	GCAGC	1 cut(s)	493
MabI	ACCWGGT	1 cut(s)	79
MaeI	CTAG	2 cut(s)	404, 410
MaeII	ACGT	1 cut(s)	422
MaeIII	GTNAC	3 cut(s)	43, 83, 539
MalI	GATC	5 cut(s)	333, 357, 418, 447, 516
MboI	GATC	5 cut(s)	331, 355, 416, 445, 514
MboII	GAAGA	1 cut(s)	26
MflI	RGATCY	2 cut(s)	416, 445
MluCI	AATT	3 cut(s)	26, 150, 261
MlyI	GAGTC	3 cut(s)	296, 373, 523
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	5 cut(s)	228, 376, 387, 459, 489
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	2 cut(s)	254, 342
MspR9I	CCNGG	6 cut(s)	11, 56, 81, 105, 254, 343
MvaI	CCWGG	4 cut(s)	11, 56, 81, 105
MwoI	GCNNNNNNNGC	1 cut(s)	461
NciI	CCSGG	2 cut(s)	254, 343
NdeII	GATC	5 cut(s)	331, 355, 416, 445, 514
NheI	GCTAGC	1 cut(s)	409
NlaIII	CATG	5 cut(s)	68, 164, 186, 270, 574
NlaIV	GGNNCC	2 cut(s)	210, 447
NmuCI	GTSAC	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	483
PleI	GAGTC	3 cut(s)	296, 372, 523
PpsI	GAGTC	3 cut(s)	296, 372, 523
Ppu21I	YACGTR	1 cut(s)	423
PshAI	GACNNNNGTC	1 cut(s)	306
Psp6I	CCWGG	4 cut(s)	9, 54, 79, 103
PspEI	GGTNACC	1 cut(s)	539
PspGI	CCWGG	4 cut(s)	9, 54, 79, 103
PspN4I	GGNNCC	2 cut(s)	210, 447
PstI	CTGCAG	1 cut(s)	483
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	2 cut(s)	416, 445
RsaI	GTAC	2 cut(s)	60, 240
RsaNI	GTAC	2 cut(s)	59, 239
SatI	GCNGC	1 cut(s)	482
Sau3AI	GATC	5 cut(s)	331, 355, 416, 445, 514
SchI	GAGTC	3 cut(s)	296, 373, 523
ScrFI	CCNGG	6 cut(s)	11, 56, 81, 105, 254, 343
SetI	ASST	8 cut(s)	82, 128, 220, 237, 405, 425, 457, 478
SexAI	ACCWGGT	1 cut(s)	79
SfcI	CTRYAG	2 cut(s)	427, 479
SmlI	CTYRAG	2 cut(s)	219, 531
SmoI	CTYRAG	2 cut(s)	219, 531
Sse9I	AATT	3 cut(s)	26, 150, 261
SsiI	CCGC	2 cut(s)	380, 413
SspMI	CTAG	2 cut(s)	404, 410
StyD4I	CCNGG	6 cut(s)	9, 54, 79, 103, 252, 341
TaaI	ACNGT	2 cut(s)	284, 559
TaiI	ACGT	1 cut(s)	425
TaqI	TCGA	3 cut(s)	120, 358, 374
TasI	AATT	3 cut(s)	26, 150, 261
TatI	WGTACW	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	6 cut(s)	39, 53, 255, 286, 335, 552
XapI	RAATTY	1 cut(s)	261
XceI	RCATGY	1 cut(s)	186
XspI	CTAG	2 cut(s)	404, 410
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.