Pre-mRNA-splicing factor ATP-dependent RNA helicase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 610 |
| AccB1I | GGYRCC | 1 cut(s) | 185 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 25 |
| AccBSI | CCGCTC | 1 cut(s) | 127 |
| AccII | CGCG | 1 cut(s) | 140 |
| AclWI | GGATC | 1 cut(s) | 1384 |
| AcoI | YGGCCR | 1 cut(s) | 1413 |
| AcsI | RAATTY | 1 cut(s) | 1111 |
| AcuI | CTGAAG | 1 cut(s) | 423 |
| AcyI | GRCGYC | 2 cut(s) | 57, 186 |
| AdeI | CACNNNGTG | 1 cut(s) | 25 |
| AfaI | GTAC | 4 cut(s) | 323, 493, 1037, 1392 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 25, 182 |
| AgsI | TTSAA | 9 cut(s) | 238, 382, 581, 793, 977, 1083, 1117, 1133, 1238 |
| AjnI | CCWGG | 1 cut(s) | 618 |
| AluBI | AGCT | 7 cut(s) | 461, 470, 659, 868, 1018, 1073, 1250 |
| AluI | AGCT | 7 cut(s) | 461, 470, 659, 868, 1018, 1073, 1250 |
| Alw26I | GTCTC | 2 cut(s) | 1016, 1263 |
| AlwI | GGATC | 1 cut(s) | 1384 |
| AoxI | GGCC | 3 cut(s) | 739, 1059, 1413 |
| ApeKI | GCWGC | 1 cut(s) | 172 |
| ApoI | RAATTY | 1 cut(s) | 1111 |
| AspA2I | CCTAGG | 1 cut(s) | 113 |
| AspLEI | GCGC | 2 cut(s) | 142, 188 |
| AsuC2I | CCSGG | 1 cut(s) | 402 |
| AsuHPI | GGTGA | 4 cut(s) | 58, 827, 833, 1175 |
| AsuII | TTCGAA | 1 cut(s) | 151 |
| AvrII | CCTAGG | 1 cut(s) | 113 |
| BanI | GGYRCC | 1 cut(s) | 185 |
| BanII | GRGCYC | 3 cut(s) | 264, 958, 1330 |
| BauI | CACGAG | 1 cut(s) | 156 |
| BbsI | GAAGAC | 5 cut(s) | 60, 283, 362, 1432, 1453 |
| BbvCI | CCTCAGC | 1 cut(s) | 411 |
| BbvI | GCAGC | 1 cut(s) | 159 |
| BccI | CCATC | 4 cut(s) | 80, 854, 1048, 1402 |
| BceAI | ACGGC | 2 cut(s) | 199, 200 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 131, 165 |
| BciT130I | CCWGG | 1 cut(s) | 620 |
| BciVI | GTATCC | 1 cut(s) | 757 |
| BcnI | CCSGG | 1 cut(s) | 402 |
| BcoDI | GTCTC | 2 cut(s) | 1016, 1263 |
| BfaI | CTAG | 3 cut(s) | 114, 504, 1440 |
| BfmI | CTRYAG | 1 cut(s) | 961 |
| BfoI | RGCGCY | 1 cut(s) | 189 |
| BfuI | GTATCC | 1 cut(s) | 757 |
| BglII | AGATCT | 2 cut(s) | 804, 1306 |
| BisI | GCNGC | 5 cut(s) | 81, 93, 96, 99, 173 |
| BlnI | CCTAGG | 1 cut(s) | 113 |
| BlsI | GCNGC | 5 cut(s) | 82, 94, 97, 100, 174 |
| BmcAI | AGTACT | 1 cut(s) | 1037 |
| Bme1390I | CCNGG | 2 cut(s) | 402, 620 |
| BmiI | GGNNCC | 3 cut(s) | 187, 955, 1327 |
| BmrFI | CCNGG | 2 cut(s) | 402, 620 |
| BmrI | ACTGGG | 1 cut(s) | 506 |
| BmsI | GCATC | 3 cut(s) | 295, 523, 814 |
| BmuI | ACTGGG | 1 cut(s) | 506 |
| BpiI | GAAGAC | 5 cut(s) | 60, 283, 362, 1432, 1453 |
| BpmI | CTGGAG | 2 cut(s) | 465, 1163 |
| Bpu10I | CCTNAGC | 1 cut(s) | 411 |
| Bpu14I | TTCGAA | 1 cut(s) | 151 |
| BpuEI | CTTGAG | 4 cut(s) | 542, 1040, 1175, 1234 |
| BpuMI | CCSGG | 1 cut(s) | 402 |
| BsaBI | GATNNNNATC | 1 cut(s) | 651 |
| BsaHI | GRCGYC | 2 cut(s) | 57, 186 |
| BsaJI | CCNNGG | 5 cut(s) | 84, 113, 181, 309, 689 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 215, 245 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 25, 182 |
| Bse1I | ACTGG | 2 cut(s) | 512, 1146 |
| Bse3DI | GCAATG | 1 cut(s) | 772 |
| Bse8I | GATNNNNATC | 1 cut(s) | 651 |
| BseBI | CCWGG | 1 cut(s) | 620 |
| BseDI | CCNNGG | 5 cut(s) | 84, 113, 181, 309, 689 |
| BseGI | GGATG | 5 cut(s) | 246, 352, 538, 652, 883 |
| BseJI | GATNNNNATC | 1 cut(s) | 651 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 25, 182 |
| BseMI | GCAATG | 1 cut(s) | 772 |
| BseMII | CTCAG | 2 cut(s) | 36, 402 |
| BseNI | ACTGG | 2 cut(s) | 512, 1146 |
| BseRI | GAGGAG | 4 cut(s) | 191, 468, 921, 1214 |
| BseXI | GCAGC | 1 cut(s) | 159 |
| BseYI | CCCAGC | 1 cut(s) | 470 |
| Bsh1236I | CGCG | 1 cut(s) | 140 |
| BshFI | GGCC | 3 cut(s) | 741, 1061, 1415 |
| BshNI | GGYRCC | 1 cut(s) | 185 |
| BsiSI | CCGG | 1 cut(s) | 401 |
| BslFI | GGGAC | 2 cut(s) | 203, 487 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 25, 182 |
| BsmAI | GTCTC | 2 cut(s) | 1016, 1263 |
| BsmBI | CGTCTC | 1 cut(s) | 1263 |
| BsmFI | GGGAC | 2 cut(s) | 203, 487 |
| BsnI | GGCC | 3 cut(s) | 741, 1061, 1415 |
| Bsp119I | TTCGAA | 1 cut(s) | 151 |
| Bsp1286I | GDGCHC | 3 cut(s) | 264, 958, 1330 |
| Bsp143I | GATC | 6 cut(s) | 316, 804, 1285, 1299, 1306, 1376 |
| Bsp19I | CCATGG | 1 cut(s) | 309 |
| BspANI | GGCC | 3 cut(s) | 741, 1061, 1415 |
| BspCNI | CTCAG | 2 cut(s) | 35, 403 |
| BspFNI | CGCG | 1 cut(s) | 140 |
| BspLI | GGNNCC | 3 cut(s) | 187, 955, 1327 |
| BspPI | GGATC | 1 cut(s) | 1384 |
| BspQI | GCTCTTC | 1 cut(s) | 788 |
| BspT104I | TTCGAA | 1 cut(s) | 151 |
| BspT107I | GGYRCC | 1 cut(s) | 185 |
| BsrBI | CCGCTC | 1 cut(s) | 127 |
| BsrDI | GCAATG | 1 cut(s) | 772 |
| BsrI | ACTGG | 2 cut(s) | 512, 1146 |
| BssECI | CCNNGG | 5 cut(s) | 84, 113, 181, 309, 689 |
| BssMI | GATC | 6 cut(s) | 316, 804, 1285, 1299, 1306, 1376 |
| BssNI | GRCGYC | 2 cut(s) | 57, 186 |
| BssSI | CACGAG | 1 cut(s) | 156 |
| BssT1I | CCWWGG | 4 cut(s) | 84, 113, 309, 689 |
| Bst2BI | CACGAG | 1 cut(s) | 156 |
| Bst2UI | CCWGG | 1 cut(s) | 620 |
| Bst4CI | ACNGT | 6 cut(s) | 326, 429, 893, 920, 1035, 1315 |
| Bst6I | CTCTTC | 3 cut(s) | 209, 788, 1233 |
| BstACI | GRCGYC | 2 cut(s) | 57, 186 |
| BstBI | TTCGAA | 1 cut(s) | 151 |
| BstC8I | GCNNGC | 5 cut(s) | 125, 260, 661, 800, 866 |
| BstDEI | CTNAG | 2 cut(s) | 22, 411 |
| BstDSI | CCRYGG | 2 cut(s) | 181, 309 |
| BstF5I | GGATG | 5 cut(s) | 246, 352, 538, 652, 883 |
| BstFNI | CGCG | 1 cut(s) | 140 |
| BstH2I | RGCGCY | 1 cut(s) | 189 |
| BstHHI | GCGC | 2 cut(s) | 142, 188 |
| BstKTI | GATC | 6 cut(s) | 319, 807, 1288, 1302, 1309, 1379 |
| BstMAI | GTCTC | 2 cut(s) | 1016, 1263 |
| BstMBI | GATC | 6 cut(s) | 316, 804, 1285, 1299, 1306, 1376 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 89, 98, 264, 467, 516, 624 |
| BstNI | CCWGG | 1 cut(s) | 620 |
| BstSCI | CCNGG | 2 cut(s) | 400, 618 |
| BstSFI | CTRYAG | 1 cut(s) | 961 |
| BstUI | CGCG | 1 cut(s) | 140 |
| BstV1I | GCAGC | 1 cut(s) | 159 |
| BstV2I | GAAGAC | 5 cut(s) | 60, 283, 362, 1432, 1453 |
| BstX2I | RGATCY | 2 cut(s) | 804, 1306 |
| BstYI | RGATCY | 2 cut(s) | 804, 1306 |
| BsuI | GTATCC | 1 cut(s) | 757 |
| BsuRI | GGCC | 3 cut(s) | 741, 1061, 1415 |
| BtgI | CCRYGG | 2 cut(s) | 181, 309 |
| BtsCI | GGATG | 5 cut(s) | 246, 352, 538, 652, 883 |
| BtsIMutI | CAGTG | 5 cut(s) | 30, 331, 447, 889, 1337 |
| Cac8I | GCNNGC | 5 cut(s) | 125, 260, 661, 800, 866 |
| CfoI | GCGC | 2 cut(s) | 142, 188 |
| CseI | GACGC | 1 cut(s) | 65 |
| Csp6I | GTAC | 4 cut(s) | 322, 492, 1036, 1391 |
| CviAII | CATG | 5 cut(s) | 275, 310, 615, 743, 1348 |
| CviQI | GTAC | 4 cut(s) | 322, 492, 1036, 1391 |
| DdeI | CTNAG | 2 cut(s) | 22, 411 |
| DinI | GGCGCC | 1 cut(s) | 187 |
| DpnI | GATC | 6 cut(s) | 318, 806, 1287, 1301, 1308, 1378 |
| DpnII | GATC | 6 cut(s) | 316, 804, 1285, 1299, 1306, 1376 |
| DraIII | CACNNNGTG | 1 cut(s) | 25 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 610 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 610 |
| EaeI | YGGCCR | 1 cut(s) | 1413 |
| Eam1104I | CTCTTC | 3 cut(s) | 209, 788, 1233 |
| EarI | CTCTTC | 3 cut(s) | 209, 788, 1233 |
| EciI | GGCGGA | 1 cut(s) | 67 |
| Eco130I | CCWWGG | 4 cut(s) | 84, 113, 309, 689 |
| Eco24I | GRGCYC | 3 cut(s) | 264, 958, 1330 |
| Eco32I | GATATC | 1 cut(s) | 1366 |
| Eco57I | CTGAAG | 1 cut(s) | 423 |
| EcoRII | CCWGG | 1 cut(s) | 618 |
| EcoRV | GATATC | 1 cut(s) | 1366 |
| EcoT14I | CCWWGG | 4 cut(s) | 84, 113, 309, 689 |
| EcoT38I | GRGCYC | 3 cut(s) | 264, 958, 1330 |
| EgeI | GGCGCC | 1 cut(s) | 187 |
| EheI | GGCGCC | 1 cut(s) | 187 |
| ErhI | CCWWGG | 4 cut(s) | 84, 113, 309, 689 |
| Esp3I | CGTCTC | 1 cut(s) | 1263 |
| FaeI | CATG | 5 cut(s) | 278, 313, 618, 746, 1351 |
| FaqI | GGGAC | 2 cut(s) | 203, 487 |
| FatI | CATG | 5 cut(s) | 274, 309, 614, 742, 1347 |
| FauI | CCCGC | 1 cut(s) | 272 |
| Fnu4HI | GCNGC | 5 cut(s) | 81, 93, 96, 99, 173 |
| FokI | GGATG | 5 cut(s) | 233, 359, 545, 659, 890 |
| FriOI | GRGCYC | 3 cut(s) | 264, 958, 1330 |
| Fsp4HI | GCNGC | 5 cut(s) | 81, 93, 96, 99, 173 |
| FspBI | CTAG | 3 cut(s) | 114, 504, 1440 |
| GlaI | GCGC | 2 cut(s) | 141, 187 |
| GluI | GCNGC | 5 cut(s) | 81, 93, 96, 99, 173 |
| GsaI | CCCAGC | 1 cut(s) | 474 |
| GsuI | CTGGAG | 2 cut(s) | 465, 1163 |
| HaeII | RGCGCY | 1 cut(s) | 189 |
| HaeIII | GGCC | 3 cut(s) | 741, 1061, 1415 |
| HapII | CCGG | 1 cut(s) | 401 |
| HgaI | GACGC | 1 cut(s) | 65 |
| HhaI | GCGC | 2 cut(s) | 142, 188 |
| Hin1I | GRCGYC | 2 cut(s) | 57, 186 |
| Hin1II | CATG | 5 cut(s) | 278, 313, 618, 746, 1351 |
| Hin6I | GCGC | 2 cut(s) | 140, 186 |
| HinP1I | GCGC | 2 cut(s) | 140, 186 |
| HincII | GTYRAC | 2 cut(s) | 638, 988 |
| HindII | GTYRAC | 2 cut(s) | 638, 988 |
| HinfI | GANTC | 8 cut(s) | 15, 135, 191, 455, 475, 938, 1024, 1043 |
| HpaII | CCGG | 1 cut(s) | 401 |
| HphI | GGTGA | 4 cut(s) | 58, 827, 833, 1175 |
| Hpy166II | GTNNAC | 9 cut(s) | 19, 28, 66, 195, 445, 638, 835, 988, 1139 |
| Hpy188I | TCNGA | 6 cut(s) | 14, 299, 760, 1090, 1304, 1360 |
| Hpy188III | TCNNGA | 6 cut(s) | 482, 785, 896, 942, 1154, 1289 |
| Hpy8I | GTNNAC | 9 cut(s) | 19, 28, 66, 195, 445, 638, 835, 988, 1139 |
| Hpy99I | CGWCG | 3 cut(s) | 172, 212, 215 |
| HpyAV | CCTTC | 3 cut(s) | 244, 731, 1096 |
| HpyCH4III | ACNGT | 6 cut(s) | 326, 429, 893, 920, 1035, 1315 |
| HpyCH4V | TGCA | 3 cut(s) | 1010, 1175, 1220 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 89, 98, 264, 467, 516, 624 |
| HpyF3I | CTNAG | 2 cut(s) | 22, 411 |
| Hsp92I | GRCGYC | 2 cut(s) | 57, 186 |
| Hsp92II | CATG | 5 cut(s) | 278, 313, 618, 746, 1351 |
| HspAI | GCGC | 2 cut(s) | 140, 186 |
| KasI | GGCGCC | 1 cut(s) | 185 |
| Kzo9I | GATC | 6 cut(s) | 316, 804, 1285, 1299, 1306, 1376 |
| LguI | GCTCTTC | 1 cut(s) | 788 |
| LmnI | GCTCC | 3 cut(s) | 953, 1201, 1325 |
| Lsp1109I | GCAGC | 1 cut(s) | 159 |
| LweI | GCATC | 3 cut(s) | 295, 523, 814 |
| MaeI | CTAG | 3 cut(s) | 114, 504, 1440 |
| MaeIII | GTNAC | 1 cut(s) | 914 |
| MalI | GATC | 6 cut(s) | 318, 806, 1287, 1301, 1308, 1378 |
| MbiI | CCGCTC | 1 cut(s) | 127 |
| MboI | GATC | 6 cut(s) | 316, 804, 1285, 1299, 1306, 1376 |
| MflI | RGATCY | 2 cut(s) | 804, 1306 |
| MhlI | GDGCHC | 3 cut(s) | 264, 958, 1330 |
| MluCI | AATT | 6 cut(s) | 883, 945, 1083, 1111, 1233, 1453 |
| Mly113I | GGCGCC | 1 cut(s) | 186 |
| MlyI | GAGTC | 4 cut(s) | 24, 200, 469, 1018 |
| MseI | TTAA | 1 cut(s) | 1265 |
| MslI | CAYNNNNRTG | 1 cut(s) | 580 |
| MspA1I | CMGCKG | 1 cut(s) | 461 |
| MspI | CCGG | 1 cut(s) | 401 |
| MspR9I | CCNGG | 2 cut(s) | 402, 620 |
| MvaI | CCWGG | 1 cut(s) | 620 |
| MvnI | CGCG | 1 cut(s) | 140 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 89, 98, 264, 467, 516, 624 |
| NarI | GGCGCC | 1 cut(s) | 186 |
| NciI | CCSGG | 1 cut(s) | 402 |
| NcoI | CCATGG | 1 cut(s) | 309 |
| NdeII | GATC | 6 cut(s) | 316, 804, 1285, 1299, 1306, 1376 |
| NlaIII | CATG | 5 cut(s) | 278, 313, 618, 746, 1351 |
| NlaIV | GGNNCC | 3 cut(s) | 187, 955, 1327 |
| NmeAIII | GCCGAG | 3 cut(s) | 85, 201, 214 |
| NmuCI | GTSAC | 1 cut(s) | 914 |
| NspV | TTCGAA | 1 cut(s) | 151 |
| PciSI | GCTCTTC | 1 cut(s) | 788 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 57, 173, 213, 285 |
| PfeI | GAWTC | 4 cut(s) | 135, 455, 938, 1043 |
| PflFI | GACNNNGTC | 2 cut(s) | 275, 287 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 25 |
| PkrI | GCNGC | 5 cut(s) | 82, 94, 97, 100, 174 |
| PleI | GAGTC | 4 cut(s) | 23, 199, 469, 1018 |
| PluTI | GGCGCC | 1 cut(s) | 189 |
| PpsI | GAGTC | 4 cut(s) | 23, 199, 469, 1018 |
| Psp6I | CCWGG | 1 cut(s) | 618 |
| PspFI | CCCAGC | 1 cut(s) | 470 |
| PspGI | CCWGG | 1 cut(s) | 618 |
| PspN4I | GGNNCC | 3 cut(s) | 187, 955, 1327 |
| PsuI | RGATCY | 2 cut(s) | 804, 1306 |
| PsyI | GACNNNGTC | 2 cut(s) | 275, 287 |
| PvuII | CAGCTG | 1 cut(s) | 461 |
| RsaI | GTAC | 4 cut(s) | 323, 493, 1037, 1392 |
| RsaNI | GTAC | 4 cut(s) | 322, 492, 1036, 1391 |
| RseI | CAYNNNNRTG | 1 cut(s) | 580 |
| SapI | GCTCTTC | 1 cut(s) | 788 |
| SaqAI | TTAA | 1 cut(s) | 1265 |
| SatI | GCNGC | 5 cut(s) | 81, 93, 96, 99, 173 |
| Sau3AI | GATC | 6 cut(s) | 316, 804, 1285, 1299, 1306, 1376 |
| ScaI | AGTACT | 1 cut(s) | 1037 |
| SchI | GAGTC | 4 cut(s) | 24, 200, 469, 1018 |
| ScrFI | CCNGG | 2 cut(s) | 402, 620 |
| SduI | GDGCHC | 3 cut(s) | 264, 958, 1330 |
| SfaNI | GCATC | 3 cut(s) | 295, 523, 814 |
| SfcI | CTRYAG | 1 cut(s) | 961 |
| SfoI | GGCGCC | 1 cut(s) | 187 |
| SfuI | TTCGAA | 1 cut(s) | 151 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 580 |
| SmlI | CTYRAG | 4 cut(s) | 521, 1019, 1154, 1213 |
| SmoI | CTYRAG | 4 cut(s) | 521, 1019, 1154, 1213 |
| Sse9I | AATT | 6 cut(s) | 883, 945, 1083, 1111, 1233, 1453 |
| SspDI | GGCGCC | 1 cut(s) | 185 |
| SspI | AATATT | 1 cut(s) | 678 |
| SspMI | CTAG | 3 cut(s) | 114, 504, 1440 |
| StyD4I | CCNGG | 2 cut(s) | 400, 618 |
| StyI | CCWWGG | 4 cut(s) | 84, 113, 309, 689 |
| TaaI | ACNGT | 6 cut(s) | 326, 429, 893, 920, 1035, 1315 |
| TaqI | TCGA | 6 cut(s) | 51, 151, 270, 895, 1000, 1197 |
| TasI | AATT | 6 cut(s) | 883, 945, 1083, 1111, 1233, 1453 |
| TatI | WGTACW | 1 cut(s) | 1035 |
| TauI | GCSGC | 4 cut(s) | 83, 95, 98, 101 |
| TfiI | GAWTC | 4 cut(s) | 135, 455, 938, 1043 |
| Tru1I | TTAA | 1 cut(s) | 1265 |
| Tru9I | TTAA | 1 cut(s) | 1265 |
| TscAI | CASTG | 5 cut(s) | 30, 331, 447, 896, 1344 |
| TseFI | GTSAC | 1 cut(s) | 914 |
| TseI | GCWGC | 1 cut(s) | 172 |
| Tsp45I | GTSAC | 1 cut(s) | 914 |
| TspDTI | ATGAA | 5 cut(s) | 235, 283, 368, 564, 1056 |
| TspGWI | ACGGA | 1 cut(s) | 890 |
| TspRI | CASTG | 5 cut(s) | 30, 331, 447, 896, 1344 |
| Tth111I | GACNNNGTC | 2 cut(s) | 275, 287 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 25 |
| XapI | RAATTY | 1 cut(s) | 1111 |
| XmaJI | CCTAGG | 1 cut(s) | 113 |
| XspI | CTAG | 3 cut(s) | 114, 504, 1440 |
| ZrmI | AGTACT | 1 cut(s) | 1037 |