Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000014.1

Orthogroup ID

OG0000463

Physical Location & Seq

Genomic Coordinates Forward (+)

217118 .. 226381

Gene Structure 9264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000014.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3285 bp

ctgtgtcgctcagtgaaaatggggagcgagagcaatttgaagacgtgggtttccgataggctgatgactttgctcggttattctcagccggctgttgttcagtacattattggattgactaaacaagcaaagtctccggctgatgtggtggagaagcttttagattcggggtggtcctcctcgtctgatacacgtgaatttgctgaagaaatattctccagagtgccccacaaatcatccggaccgaatgtgactaaacaagcaaagtctccggccgatgtggtggagaagcttttagattcggggtggtcctcctcgactgatacacgtgaatttgctgaagaaatattctccagagtgccccacaaatcatccggaccgaatgtttatcagaaacaagagagggaggctgcaatgctggtgagaaagcagaagacatatgctctattggatgcagatgatgaagacgacgatgatggtgataagtcttctgttccagtagtttctgagtccaggaaaagtgattcccataagaaacggttcaggaggaaggcctcgagtcaagacgatgaagatgatgaggtgattgtacaccaggaagaagtgaggcgggtcaaaagacgaacttccccagatgaagatgatggttcagagtccgaagaagaaagattgcgtgatcaaagagagcgggagcaattagagcgcaatataagggagagggacacagcagctacacgaaagttaacagagagaaagttatcaaaaaaagaggaagaggaggctattcggagaaacaaggcttcagagcgaaatgaaactgaagatttaagactagtttcaagacaagaatatttaaagaaaagacagcagaagaaactggaggaaatcagagatgaaatagaagatgagcaatacttatttgagcacgtgaagctcactgaattggaacgtcgtgaattaagttacaagaagcaaatacttgaggctgtaacgaagcgggcagttgaggacgagaatcaaaatgagtacaggattcctgatgcctatgatgtggaggggggtgtcaatcaggagaagagattttctgtggccatgcaacgctacagggacctggctggggataaaatgaatccatttgcagaacaggatgcttgggaggatcaccaaattggaaaggcaacactgcagtatggttcaaaaaataaaaagcgatctgatgagtatcaatatgtatttgaggaccagattgatttcatcaaggcatcagtaatggatggtgaccagtttgaggatgggcaaccggcggatttacttgagtcgagagcgaaatcagagttggagaagctccaggaggacagaaaaacattacccatctactcctatcgtgatgagttgctcaaagctgttgataaccatcaggttcttgttattgttggtgaaaccggttctgggaaaactacgcaaataccccagtatctccacgaggccggatacacaaaacgtggaaagattgggtgcacacagccacgacgagttgcggctatgagtgttgctgcaagggtttctcaagaaatgggtgtgaaacttgggcatgaggtaggttattccattcgtttcgaggattgcacatcggaaaagacggttttgaaatatatgacagatgggatgttgttgcgagaattccttggtgaaccagatctggcaggctacagtgtggttatggtggatgaggcccatgagagaacactttcaactgatattctatttggattagtaaaggatattgctcgatttcgacctgatcttaaactacttatctcaagtgcaacacttgatgctgagaagttcagtgattattttgattctgctccaattttcaaaattccggggaggcgttatcctgttgaaataaattacacaaaagcaccagaagctgattacttggatgcagcaattgttactgcactgcaaatccatgtgacagaagcacctggagatatattagtgttccttacaggtcaagaagaaattgaaacagcggaagaaatattgaagcacagaacaaggggcttagggacaaaaattgctgagcttattatttgtcccatatatgcaaacctacctactgagctacaatccaaaatttttgagcccacacctgaaggggcaaggaaagttgtcctcgcgacaaatatagctgaaacttcactaactattgatgggatcaaatatgttattgacccagggttttgcaagatgaagtcatataatccaaggactgggatggagtcgttgctggtcgctcccatctcaaaggcatcggccaatcagagggcaggtcgatctgggagaacgggtcctggaaagtgctaccggctatataccatgttcaattaccaaactgagttagaagataacacggtaccagaaatacaaaggactaaccttgcaaatgttgtgctcatgctgaaaagccttggtatccatgacctattacattttgattttatggacccgccaccatcagaggcattactgaaagccttggaactgttatttgcactaagtgcattaaataaagtgggtgagttgactaaagttggtagacggatggccgagtttcctcttgatcctatgctatctaagatgatagttgcttctgataagtacaagtgttcagacgagatcatttccattgcttccatgctttccattggtaattcaatattttaccgtccaaaggacaaacaagtccatgctgacaatgcacggttgaattttcacactgggaatgtgggagatcacatcgcattgctcaaggtttttaattcatggaaagagaccaatttctcaacacaatggtgttacgagaattatatacaggtcaggagtatgaagcgcgctagagatattagagaccagctcgagggactcttggagagggtcgagattgagcaggtctcaaatcttgattttgaagttataaagaaggccattacatccggctttttccctcattccgcaagactgcaaaagagtggagcttatagaacggtcaaacatccgcagactgtccacatacaccccagctcagggctttctcaggtgcttccaagatgggttatataccatgagttggtgcttacaaccaaggaatatatgagacaggtaacggaactgaagccagagtggttggtggaaatagctccgcattattaccagctaaaggatgttgaagattcagtgtcaaagaaaatgcctcgtggagaagggctcgcatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

1094

Amino Acids

124.85

Weight (kDa)

5.75

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca	FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica	MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica	Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis	pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis	RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata	RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora	Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa	Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha	Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana	Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2984
AasI	GACNNNNNNGTC	1 cut(s)	2750
Acc36I	ACCTGC	2 cut(s)	2327, 2947
Acc65I	GGTACC	1 cut(s)	2422
AccB1I	GGYRCC	1 cut(s)	2422
AccB7I	CCANNNNNTGG	2 cut(s)	2279, 3136
AccBSI	CCGCTC	1 cut(s)	688
AccI	GTMKAC	1 cut(s)	2605
AccII	CGCG	2 cut(s)	2186, 2901
AccIII	TCCGGA	2 cut(s)	239, 374
AclWI	GGATC	3 cut(s)	1167, 2231, 2624
AcoI	YGGCCR	4 cut(s)	273, 1089, 2322, 2613
AcsI	RAATTY	6 cut(s)	197, 332, 1679, 1881, 2142, 2776
AcuI	CTGAAG	6 cut(s)	225, 360, 786, 840, 2181, 3200
AcvI	CACGTG	3 cut(s)	194, 329, 928
AdeI	CACNNNGTG	1 cut(s)	2567
AfaI	GTAC	5 cut(s)	104, 591, 1028, 2424, 2669
AflIII	ACRYGT	2 cut(s)	191, 326
AgeI	ACCGGT	1 cut(s)	1442
AhlI	ACTAGT	1 cut(s)	832
AjiI	CACGTC	1 cut(s)	45
AjnI	CCWGG	7 cut(s)	512, 594, 1110, 1347, 1990, 2242, 2359
AjuI	GAANNNNNNNTTGG	2 cut(s)	1319, 1351
AleI	CACNNNNGTG	1 cut(s)	2860
Alw21I	GWGCWC	3 cut(s)	927, 1520, 2463
Alw26I	GTCTC	6 cut(s)	138, 273, 2834, 2910, 2965, 3157
Alw44I	GTGCAC	1 cut(s)	1516
AlwI	GGATC	3 cut(s)	1167, 2231, 2624
AlwNI	CAGNNNCTG	1 cut(s)	1934
Ama87I	CYCGRG	2 cut(s)	556, 2924
Aor13HI	TCCGGA	2 cut(s)	239, 374
AoxI	GGCC	8 cut(s)	273, 552, 1089, 1485, 1731, 2322, 2613, 2991
ApaLI	GTGCAC	1 cut(s)	1516
ApeKI	GCWGC	4 cut(s)	410, 728, 1553, 1949
ApoI	RAATTY	6 cut(s)	197, 332, 1679, 1881, 2142, 2776
AsiGI	ACCGGT	1 cut(s)	1442
Asp700I	GAANNNNTTC	2 cut(s)	539, 1747
Asp718I	GGTACC	1 cut(s)	2422
AspLEI	GCGC	3 cut(s)	705, 2901, 2903
AspS9I	GGNCC	9 cut(s)	174, 242, 309, 377, 1108, 1240, 1732, 2357, 2512
AsuC2I	CCSGG	1 cut(s)	1887
AsuHPI	GGTGA	8 cut(s)	433, 491, 595, 1154, 1289, 1448, 1700, 2597
AvaI	CYCGRG	2 cut(s)	556, 2924
AvaII	GGWCC	8 cut(s)	174, 242, 309, 377, 1108, 1240, 2357, 2512
BaeGI	GKGCMC	3 cut(s)	228, 363, 1520
BaeI	ACNNNNGTAYC	2 cut(s)	1457, 1490
BalI	TGGCCA	1 cut(s)	1091
BanI	GGYRCC	1 cut(s)	2422
BanII	GRGCYC	2 cut(s)	2154, 3276
BauI	CACGAG	2 cut(s)	1481, 3261
BbrPI	CACGTG	3 cut(s)	194, 329, 928
BbsI	GAAGAC	4 cut(s)	47, 440, 471, 480
Bbv12I	GWGCWC	3 cut(s)	927, 1520, 2463
BbvI	GCAGC	4 cut(s)	397, 740, 1540, 1961
BciT130I	CCWGG	7 cut(s)	514, 596, 1112, 1349, 1992, 2244, 2361
BciVI	GTATCC	2 cut(s)	1484, 2492
BclI	TGATCA	1 cut(s)	676
BcnI	CCSGG	1 cut(s)	1887
BcoDI	GTCTC	6 cut(s)	138, 273, 2834, 2910, 2965, 3157
BcuI	ACTAGT	1 cut(s)	832
BfaI	CTAG	2 cut(s)	833, 2904
BfmI	CTRYAG	3 cut(s)	1102, 1184, 1708
BfuAI	ACCTGC	2 cut(s)	2327, 2947
BfuI	GTATCC	2 cut(s)	1484, 2492
BglII	AGATCT	1 cut(s)	1696
BisI	GCNGC	5 cut(s)	411, 729, 1539, 1554, 1950
BlpI	GCTNAGC	1 cut(s)	2088
BlsI	GCNGC	5 cut(s)	412, 730, 1540, 1555, 1951
Bme1390I	CCNGG	8 cut(s)	514, 596, 1112, 1349, 1887, 1992, 2244, 2361
Bme18I	GGWCC	8 cut(s)	174, 242, 309, 377, 1108, 1240, 2357, 2512
BmeT110I	CYCGRG	2 cut(s)	556, 2924
BmgBI	CACGTC	1 cut(s)	45
BmgT120I	GGNCC	9 cut(s)	174, 242, 309, 377, 1108, 1240, 1732, 2357, 2512
BmiI	GGNNCC	4 cut(s)	1109, 2358, 2424, 2514
BmrFI	CCNGG	8 cut(s)	514, 596, 1112, 1349, 1887, 1992, 2244, 2361
BmrI	ACTGGG	3 cut(s)	1465, 2289, 2796
BmsI	GCATC	7 cut(s)	442, 1030, 1138, 1271, 1825, 1936, 2327
BmuI	ACTGGG	3 cut(s)	1465, 2289, 2796
BpiI	GAAGAC	4 cut(s)	47, 440, 471, 480
BplI	GAGNNNNNCTC	5 cut(s)	2907, 2939, 2945, 2977, 3258
BpmI	CTGGAG	5 cut(s)	202, 337, 899, 1331, 2013
Bpu10I	CCTNAGC	2 cut(s)	2071, 3091
Bpu1102I	GCTNAGC	1 cut(s)	2088
BpuEI	CTTGAG	5 cut(s)	1001, 1334, 1551, 1804, 2801
BpuMI	CCSGG	1 cut(s)	1887
BsaAI	YACGTR	3 cut(s)	194, 329, 928
BsaBI	GATNNNNATC	2 cut(s)	1221, 1413
BsaI	GGTCTC	3 cut(s)	2834, 2910, 2965
BsaJI	CCNNGG	8 cut(s)	1684, 1886, 2242, 2243, 2273, 2476, 2544, 3150
BsaWI	WCCGGW	3 cut(s)	239, 374, 1442
BsaXI	ACNNNNNCTCC	2 cut(s)	2341, 2371
Bse118I	RCCGGY	4 cut(s)	88, 1300, 1442, 2373
Bse1I	ACTGG	6 cut(s)	497, 882, 1282, 1471, 2284, 2791
Bse3DI	GCAATG	3 cut(s)	420, 2694, 2810
Bse8I	GATNNNNATC	2 cut(s)	1221, 1413
BseAI	TCCGGA	2 cut(s)	239, 374
BseBI	CCWGG	7 cut(s)	514, 596, 1112, 1349, 1992, 2244, 2361
BseDI	CCNNGG	8 cut(s)	1684, 1886, 2242, 2243, 2273, 2476, 2544, 3150
BseJI	GATNNNNATC	2 cut(s)	1221, 1413
BseMI	GCAATG	3 cut(s)	420, 2694, 2810
BseMII	CTCAG	9 cut(s)	24, 98, 498, 1830, 2079, 2118, 2394, 3105, 3116
BseNI	ACTGG	6 cut(s)	497, 882, 1282, 1471, 2284, 2791
BsePI	GCGCGC	1 cut(s)	2899
BseRI	GAGGAG	3 cut(s)	169, 304, 791
BseSI	GKGCMC	3 cut(s)	228, 363, 1520
BseX3I	CGGCCG	1 cut(s)	273
BseXI	GCAGC	4 cut(s)	397, 740, 1540, 1961
BseYI	CCCAGC	2 cut(s)	1115, 3086
BsgI	GTGCAG	1 cut(s)	1947
Bsh1236I	CGCG	2 cut(s)	2186, 2901
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	8 cut(s)	275, 554, 1091, 1487, 1733, 2324, 2615, 2993
BshNI	GGYRCC	1 cut(s)	2422
BshTI	ACCGGT	1 cut(s)	1442
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	3 cut(s)	927, 1520, 2463
BsiHKCI	CYCGRG	2 cut(s)	556, 2924
BslFI	GGGAC	5 cut(s)	734, 1121, 2088, 2089, 2943
BsmAI	GTCTC	6 cut(s)	138, 273, 2834, 2910, 2965, 3157
BsmFI	GGGAC	5 cut(s)	734, 1121, 2088, 2089, 2943
BsnI	GGCC	8 cut(s)	275, 554, 1091, 1487, 1733, 2324, 2615, 2993
Bso31I	GGTCTC	3 cut(s)	2834, 2910, 2965
BsoBI	CYCGRG	2 cut(s)	556, 2924
Bsp1286I	GDGCHC	7 cut(s)	228, 363, 927, 1520, 2154, 2463, 3276
Bsp13I	TCCGGA	2 cut(s)	239, 374
Bsp1407I	TGTACA	1 cut(s)	589
Bsp1720I	GCTNAGC	1 cut(s)	2088
Bsp68I	TCGCGA	1 cut(s)	2186
BspANI	GGCC	8 cut(s)	275, 554, 1091, 1487, 1733, 2324, 2615, 2993
BspCNI	CTCAG	9 cut(s)	23, 97, 499, 1831, 2080, 2119, 2395, 3104, 3115
BspEI	TCCGGA	2 cut(s)	239, 374
BspFNI	CGCG	2 cut(s)	2186, 2901
BspLI	GGNNCC	4 cut(s)	1109, 2358, 2424, 2514
BspMAI	CTGCAG	1 cut(s)	1188
BspMI	ACCTGC	2 cut(s)	2327, 2947
BspPI	GGATC	3 cut(s)	1167, 2231, 2624
BspT107I	GGYRCC	1 cut(s)	2422
BspTNI	GGTCTC	3 cut(s)	2834, 2910, 2965
BsrBI	CCGCTC	1 cut(s)	688
BsrDI	GCAATG	3 cut(s)	420, 2694, 2810
BsrFI	RCCGGY	4 cut(s)	88, 1300, 1442, 2373
BsrGI	TGTACA	1 cut(s)	589
BsrI	ACTGG	6 cut(s)	497, 882, 1282, 1471, 2284, 2791
BssAI	RCCGGY	4 cut(s)	88, 1300, 1442, 2373
BssECI	CCNNGG	8 cut(s)	1684, 1886, 2242, 2243, 2273, 2476, 2544, 3150
BssHII	GCGCGC	1 cut(s)	2899
BssSI	CACGAG	2 cut(s)	1481, 3261
BssT1I	CCWWGG	5 cut(s)	1684, 2273, 2476, 2544, 3150
Bst2BI	CACGAG	2 cut(s)	1481, 3261
Bst2UI	CCWGG	7 cut(s)	514, 596, 1112, 1349, 1992, 2244, 2361
Bst4CI	ACNGT	9 cut(s)	540, 1642, 1712, 2422, 2553, 2735, 2772, 3055, 3073
Bst6I	CTCTTC	2 cut(s)	768, 1070
BstAPI	GCANNNNNTGC	1 cut(s)	2567
BstAUI	TGTACA	1 cut(s)	589
BstBAI	YACGTR	3 cut(s)	194, 329, 928
BstC8I	GCNNGC	5 cut(s)	90, 999, 1705, 2901, 3276
BstEII	GGTNACC	1 cut(s)	1277
BstFNI	CGCG	2 cut(s)	2186, 2901
BstHHI	GCGC	3 cut(s)	705, 2901, 2903
BstMAI	GTCTC	6 cut(s)	138, 273, 2834, 2910, 2965, 3157
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	5 cut(s)	700, 931, 1931, 2567, 2765
BstNI	CCWGG	7 cut(s)	514, 596, 1112, 1349, 1992, 2244, 2361
BstPI	GGTNACC	1 cut(s)	1277
BstSCI	CCNGG	8 cut(s)	512, 594, 1110, 1347, 1885, 1990, 2242, 2359
BstSFI	CTRYAG	3 cut(s)	1102, 1184, 1708
BstSLI	GKGCMC	3 cut(s)	228, 363, 1520
BstUI	CGCG	2 cut(s)	2186, 2901
BstV1I	GCAGC	4 cut(s)	397, 740, 1540, 1961
BstV2I	GAAGAC	4 cut(s)	47, 440, 471, 480
BstX2I	RGATCY	1 cut(s)	1696
BstYI	RGATCY	1 cut(s)	1696
BstZI	CGGCCG	1 cut(s)	273
BsuI	GTATCC	2 cut(s)	1484, 2492
BsuRI	GGCC	8 cut(s)	275, 554, 1091, 1487, 1733, 2324, 2615, 2993
BtgZI	GCGATG	1 cut(s)	2791
BtrI	CACGTC	1 cut(s)	45
BtsI	GCAGTG	2 cut(s)	1181, 1964
BtsIMutI	CAGTG	8 cut(s)	18, 936, 1181, 1717, 1855, 1964, 2784, 3249
BtuMI	TCGCGA	1 cut(s)	2186
BveI	ACCTGC	2 cut(s)	2327, 2947
Cac8I	GCNNGC	5 cut(s)	90, 999, 1705, 2901, 3276
CaiI	CAGNNNCTG	1 cut(s)	1934
CfoI	GCGC	3 cut(s)	705, 2901, 2903
Cfr10I	RCCGGY	4 cut(s)	88, 1300, 1442, 2373
Cfr13I	GGNCC	9 cut(s)	174, 242, 309, 377, 1108, 1240, 1732, 2357, 2512
CpoI	CGGWCCG	2 cut(s)	242, 377
Csp6I	GTAC	5 cut(s)	103, 590, 1027, 2423, 2668
CspAI	ACCGGT	1 cut(s)	1442
CspI	CGGWCCG	2 cut(s)	242, 377
CviQI	GTAC	5 cut(s)	103, 590, 1027, 2423, 2668
DraI	TTTAAA	1 cut(s)	855
DraIII	CACNNNGTG	1 cut(s)	2567
DrdI	GACNNNNNNGTC	1 cut(s)	2750
DseDI	GACNNNNNNGTC	1 cut(s)	2750
EaeI	YGGCCR	4 cut(s)	273, 1089, 2322, 2613
EagI	CGGCCG	1 cut(s)	273
Eam1104I	CTCTTC	2 cut(s)	768, 1070
EarI	CTCTTC	2 cut(s)	768, 1070
EciI	GGCGGA	1 cut(s)	1319
EclXI	CGGCCG	1 cut(s)	273
Eco130I	CCWWGG	5 cut(s)	1684, 2273, 2476, 2544, 3150
Eco147I	AGGCCT	1 cut(s)	554
Eco24I	GRGCYC	2 cut(s)	2154, 3276
Eco31I	GGTCTC	3 cut(s)	2834, 2910, 2965
Eco47I	GGWCC	8 cut(s)	174, 242, 309, 377, 1108, 1240, 2357, 2512
Eco52I	CGGCCG	1 cut(s)	273
Eco57I	CTGAAG	6 cut(s)	225, 360, 786, 840, 2181, 3200
Eco72I	CACGTG	3 cut(s)	194, 329, 928
Eco88I	CYCGRG	2 cut(s)	556, 2924
Eco91I	GGTNACC	1 cut(s)	1277
EcoO109I	RGGNCCY	2 cut(s)	1108, 2357
EcoO65I	GGTNACC	1 cut(s)	1277
EcoRI	GAATTC	1 cut(s)	1679
EcoRII	CCWGG	7 cut(s)	512, 594, 1110, 1347, 1990, 2242, 2359
EcoT14I	CCWWGG	5 cut(s)	1684, 2273, 2476, 2544, 3150
EcoT38I	GRGCYC	2 cut(s)	2154, 3276
ErhI	CCWWGG	5 cut(s)	1684, 2273, 2476, 2544, 3150
FalI	AAGNNNNNCTT	2 cut(s)	610, 642
FaqI	GGGAC	5 cut(s)	734, 1121, 2088, 2089, 2943
FauI	CCCGC	4 cut(s)	603, 681, 990, 2523
FauNDI	CATATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	2605
Fnu4HI	GCNGC	5 cut(s)	411, 729, 1539, 1554, 1950
FriOI	GRGCYC	2 cut(s)	2154, 3276
Fsp4HI	GCNGC	5 cut(s)	411, 729, 1539, 1554, 1950
FspBI	CTAG	2 cut(s)	833, 2904
GlaI	GCGC	3 cut(s)	704, 2900, 2902
GluI	GCNGC	5 cut(s)	411, 729, 1539, 1554, 1950
GsaI	CCCAGC	2 cut(s)	1119, 3090
GsuI	CTGGAG	5 cut(s)	202, 337, 899, 1331, 2013
HaeIII	GGCC	8 cut(s)	275, 554, 1091, 1487, 1733, 2324, 2615, 2993
HhaI	GCGC	3 cut(s)	705, 2901, 2903
Hin6I	GCGC	3 cut(s)	703, 2899, 2901
HinP1I	GCGC	3 cut(s)	703, 2899, 2901
HincII	GTYRAC	2 cut(s)	744, 2592
HindII	GTYRAC	2 cut(s)	744, 2592
HindIII	AAGCTT	2 cut(s)	155, 290
HpaI	GTTAAC	1 cut(s)	744
HphI	GGTGA	8 cut(s)	433, 491, 595, 1154, 1289, 1448, 1700, 2597
Hpy166II	GTNNAC	7 cut(s)	592, 744, 1518, 1691, 2592, 2606, 3076
Hpy8I	GTNNAC	7 cut(s)	592, 744, 1518, 1691, 2592, 2606, 3076
Hpy99I	CGWCG	3 cut(s)	473, 954, 1533
HpyAV	CCTTC	4 cut(s)	544, 2156, 2983, 3263
HpyCH4III	ACNGT	9 cut(s)	540, 1642, 1712, 2422, 2553, 2735, 2772, 3055, 3073
HpyCH4IV	ACGT	6 cut(s)	44, 193, 328, 927, 949, 1501
HpyF10VI	GCNNNNNNNGC	5 cut(s)	700, 931, 1931, 2567, 2765
HpySE526I	ACGT	6 cut(s)	44, 193, 328, 927, 949, 1501
HspAI	GCGC	3 cut(s)	703, 2899, 2901
Kpn2I	TCCGGA	2 cut(s)	239, 374
KpnI	GGTACC	1 cut(s)	2426
KroI	GCCGGC	1 cut(s)	88
KroNI	GCCGGC	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	676
KspAI	GTTAAC	1 cut(s)	744
LmnI	GCTCC	7 cut(s)	24, 691, 1350, 1873, 2308, 3041, 3211
Lsp1109I	GCAGC	4 cut(s)	397, 740, 1540, 1961
LweI	GCATC	7 cut(s)	442, 1030, 1138, 1271, 1825, 1936, 2327
MaeI	CTAG	2 cut(s)	833, 2904
MaeII	ACGT	6 cut(s)	44, 193, 328, 927, 949, 1501
MaeIII	GTNAC	8 cut(s)	250, 962, 988, 1277, 1957, 1978, 2864, 3169
MbiI	CCGCTC	1 cut(s)	688
MfeI	CAATTG	1 cut(s)	1953
MflI	RGATCY	1 cut(s)	1696
MhlI	GDGCHC	7 cut(s)	228, 363, 927, 1520, 2154, 2463, 3276
MlsI	TGGCCA	1 cut(s)	1091
MluNI	TGGCCA	1 cut(s)	1091
MlyI	GAGTC	6 cut(s)	518, 568, 662, 1325, 2297, 2925
MmeI	TCCRAC	1 cut(s)	1317
Mox20I	TGGCCA	1 cut(s)	1091
MroI	TCCGGA	2 cut(s)	239, 374
MroNI	GCCGGC	1 cut(s)	88
MroXI	GAANNNNTTC	2 cut(s)	539, 1747
MscI	TGGCCA	1 cut(s)	1091
MseI	TTAA	7 cut(s)	743, 827, 854, 959, 1806, 2573, 2826
MslI	CAYNNNNRTG	1 cut(s)	2860
Msp20I	TGGCCA	1 cut(s)	1091
MspA1I	CMGCKG	1 cut(s)	2039
MspR9I	CCNGG	8 cut(s)	514, 596, 1112, 1349, 1887, 1992, 2244, 2361
MunI	CAATTG	1 cut(s)	1953
MvaI	CCWGG	7 cut(s)	514, 596, 1112, 1349, 1992, 2244, 2361
MvnI	CGCG	2 cut(s)	2186, 2901
MwoI	GCNNNNNNNGC	5 cut(s)	700, 931, 1931, 2567, 2765
NaeI	GCCGGC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	1887
NdeI	CATATG	1 cut(s)	439
NgoMIV	GCCGGC	1 cut(s)	88
NlaIV	GGNNCC	4 cut(s)	1109, 2358, 2424, 2514
NmeAIII	GCCGAG	1 cut(s)	2641
NmuCI	GTSAC	3 cut(s)	250, 1277, 1978
NruI	TCGCGA	1 cut(s)	2186
OliI	CACNNNNGTG	1 cut(s)	2860
PaeR7I	CTCGAG	2 cut(s)	556, 2924
PasI	CCCWGGG	1 cut(s)	2243
PauI	GCGCGC	1 cut(s)	2899
PceI	AGGCCT	1 cut(s)	554
PdiI	GCCGGC	1 cut(s)	90
PdmI	GAANNNNTTC	2 cut(s)	539, 1747
PfeI	GAWTC	8 cut(s)	164, 299, 524, 1015, 1033, 1129, 1862, 3239
PflMI	CCANNNNNTGG	2 cut(s)	2279, 3136
PfoI	TCCNGGA	3 cut(s)	512, 1347, 2359
PinAI	ACCGGT	1 cut(s)	1442
PkrI	GCNGC	5 cut(s)	412, 730, 1540, 1555, 1951
PleI	GAGTC	6 cut(s)	517, 567, 661, 1324, 2296, 2925
PmaCI	CACGTG	3 cut(s)	194, 329, 928
PmlI	CACGTG	3 cut(s)	194, 329, 928
PpsI	GAGTC	6 cut(s)	517, 567, 661, 1324, 2296, 2925
Ppu21I	YACGTR	3 cut(s)	194, 329, 928
PpuMI	RGGWCCY	2 cut(s)	1108, 2357
PsiI	TTATAA	1 cut(s)	2984
Psp5II	RGGWCCY	2 cut(s)	1108, 2357
Psp6I	CCWGG	7 cut(s)	512, 594, 1110, 1347, 1990, 2242, 2359
PspCI	CACGTG	3 cut(s)	194, 329, 928
PspEI	GGTNACC	1 cut(s)	1277
PspFI	CCCAGC	2 cut(s)	1115, 3086
PspGI	CCWGG	7 cut(s)	512, 594, 1110, 1347, 1990, 2242, 2359
PspN4I	GGNNCC	4 cut(s)	1109, 2358, 2424, 2514
PspPI	GGNCC	9 cut(s)	174, 242, 309, 377, 1108, 1240, 1732, 2357, 2512
PspPPI	RGGWCCY	2 cut(s)	1108, 2357
PspXI	VCTCGAGB	2 cut(s)	556, 2924
PstI	CTGCAG	1 cut(s)	1188
PstNI	CAGNNNCTG	1 cut(s)	1934
PsuI	RGATCY	1 cut(s)	1696
PteI	GCGCGC	1 cut(s)	2899
RruI	TCGCGA	1 cut(s)	2186
RsaI	GTAC	5 cut(s)	104, 591, 1028, 2424, 2669
RsaNI	GTAC	5 cut(s)	103, 590, 1027, 2423, 2668
RseI	CAYNNNNRTG	1 cut(s)	2860
Rsr2I	CGGWCCG	2 cut(s)	242, 377
RsrII	CGGWCCG	2 cut(s)	242, 377
SaqAI	TTAA	7 cut(s)	743, 827, 854, 959, 1806, 2573, 2826
SatI	GCNGC	5 cut(s)	411, 729, 1539, 1554, 1950
Sau96I	GGNCC	9 cut(s)	174, 242, 309, 377, 1108, 1240, 1732, 2357, 2512
SchI	GAGTC	6 cut(s)	518, 568, 662, 1325, 2297, 2925
ScrFI	CCNGG	8 cut(s)	514, 596, 1112, 1349, 1887, 1992, 2244, 2361
SduI	GDGCHC	7 cut(s)	228, 363, 927, 1520, 2154, 2463, 3276
SfaNI	GCATC	7 cut(s)	442, 1030, 1138, 1271, 1825, 1936, 2327
SfcI	CTRYAG	3 cut(s)	1102, 1184, 1708
Sfr274I	CTCGAG	2 cut(s)	556, 2924
SinI	GGWCC	8 cut(s)	174, 242, 309, 377, 1108, 1240, 2357, 2512
SlaI	CTCGAG	2 cut(s)	556, 2924
SmiMI	CAYNNNNRTG	1 cut(s)	2860
SmlI	CTYRAG	7 cut(s)	556, 980, 1313, 1566, 1819, 2816, 2924
SmoI	CTYRAG	7 cut(s)	556, 980, 1313, 1566, 1819, 2816, 2924
SpeI	ACTAGT	1 cut(s)	832
SseBI	AGGCCT	1 cut(s)	554
SspI	AATATT	5 cut(s)	213, 348, 851, 2049, 2727
SspMI	CTAG	2 cut(s)	833, 2904
StuI	AGGCCT	1 cut(s)	554
StyD4I	CCNGG	8 cut(s)	512, 594, 1110, 1347, 1885, 1990, 2242, 2359
StyI	CCWWGG	5 cut(s)	1684, 2273, 2476, 2544, 3150
TaaI	ACNGT	9 cut(s)	540, 1642, 1712, 2422, 2553, 2735, 2772, 3055, 3073
TaiI	ACGT	6 cut(s)	47, 196, 331, 930, 952, 1504
TaqI	TCGA	9 cut(s)	317, 557, 1319, 1617, 1789, 1795, 2341, 2925, 2946
TaqII	GACCGA	2 cut(s)	259, 394
TatI	WGTACW	4 cut(s)	102, 589, 1026, 2667
TauI	GCSGC	1 cut(s)	1541
TfiI	GAWTC	8 cut(s)	164, 299, 524, 1015, 1033, 1129, 1862, 3239
Tru1I	TTAA	7 cut(s)	743, 827, 854, 959, 1806, 2573, 2826
Tru9I	TTAA	7 cut(s)	743, 827, 854, 959, 1806, 2573, 2826
TscAI	CASTG	8 cut(s)	18, 943, 1188, 1717, 1855, 1971, 2791, 3249
TseFI	GTSAC	3 cut(s)	250, 1277, 1978
TseI	GCWGC	4 cut(s)	410, 728, 1553, 1949
Tsp45I	GTSAC	3 cut(s)	250, 1277, 1978
TspGWI	ACGGA	2 cut(s)	2623, 3188
TspRI	CASTG	8 cut(s)	18, 943, 1188, 1717, 1855, 1971, 2791, 3249
Van91I	CCANNNNNTGG	2 cut(s)	2279, 3136
VneI	GTGCAC	1 cut(s)	1516
VpaK11BI	GGWCC	8 cut(s)	174, 242, 309, 377, 1108, 1240, 2357, 2512
XapI	RAATTY	6 cut(s)	197, 332, 1679, 1881, 2142, 2776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1289
XhoI	CTCGAG	2 cut(s)	556, 2924
XmiI	GTMKAC	1 cut(s)	2605
XmnI	GAANNNNTTC	2 cut(s)	539, 1747
XspI	CTAG	2 cut(s)	833, 2904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.