pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DEAD | PF00270 | 412 - 562 | 9.4e-07 | DEAD/DEAH box helicase |
| AAA_22 | PF13401 | 419 - 543 | 2e-06 | AAA domain |
| Helicase_C | PF00271 | 608 - 733 | 4.8e-11 | Helicase conserved C-terminal domain |
| WHD_HA2 | PF04408 | 796 - 824 | 5.1e-09 | Helicase associated domain (HA2), winged-helix |
| HA2_C | PF21010 | 825 - 886 | 1.6e-11 | Helicase associated domain (HA2), ratchet-like |
| OB_NTP_bind | PF07717 | 944 - 1021 | 4.5e-24 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2374 |
| Acc36I | ACCTGC | 1 cut(s) | 2374 |
| AccB1I | GGYRCC | 1 cut(s) | 2266 |
| AccI | GTMKAC | 1 cut(s) | 445 |
| AccII | CGCG | 2 cut(s) | 1521, 1633 |
| AccIII | TCCGGA | 1 cut(s) | 2730 |
| AciI | CCGC | 4 cut(s) | 68, 1633, 2603, 2861 |
| AclI | AACGTT | 1 cut(s) | 590 |
| AclWI | GGATC | 5 cut(s) | 1810, 1921, 2078, 2468, 2896 |
| AcoI | YGGCCR | 2 cut(s) | 426, 1545 |
| AcsI | RAATTY | 6 cut(s) | 189, 867, 1025, 1688, 2325, 2620 |
| AcuI | CTGAAG | 7 cut(s) | 324, 489, 1175, 1458, 1511, 1794, 2391 |
| AfaI | GTAC | 8 cut(s) | 800, 1363, 1471, 1921, 2225, 2277, 2894, 2988 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1825, 2123, 2584, 2939, 3073 |
| AflII | CTTAAG | 2 cut(s) | 661, 1241 |
| AflIII | ACRYGT | 1 cut(s) | 448 |
| AhlI | ACTAGT | 1 cut(s) | 2983 |
| AjnI | CCWGG | 5 cut(s) | 945, 1542, 1729, 2086, 2203 |
| Alw21I | GWGCWC | 4 cut(s) | 1771, 2416, 2522, 2925 |
| Alw26I | GTCTC | 3 cut(s) | 670, 676, 1275 |
| Alw44I | GTGCAC | 2 cut(s) | 1767, 2921 |
| AlwI | GGATC | 5 cut(s) | 1810, 1921, 2078, 2468, 2896 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 347 |
| Ama87I | CYCGRG | 3 cut(s) | 673, 2116, 2426 |
| Aor13HI | TCCGGA | 1 cut(s) | 2730 |
| AoxI | GGCC | 2 cut(s) | 426, 1545 |
| ApaLI | GTGCAC | 2 cut(s) | 1767, 2921 |
| ApoI | RAATTY | 6 cut(s) | 189, 867, 1025, 1688, 2325, 2620 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 13, 45 |
| AseI | ATTAAT | 1 cut(s) | 1937 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 463, 971 |
| AspLEI | GCGC | 2 cut(s) | 1521, 1633 |
| AspS9I | GGNCC | 5 cut(s) | 943, 997, 1587, 2356, 2728 |
| AsuC2I | CCSGG | 2 cut(s) | 2632, 2851 |
| AsuHPI | GGTGA | 6 cut(s) | 105, 176, 773, 1127, 1544, 2654 |
| AsuII | TTCGAA | 1 cut(s) | 622 |
| AvaI | CYCGRG | 3 cut(s) | 673, 2116, 2426 |
| AvaII | GGWCC | 5 cut(s) | 943, 997, 1587, 2356, 2728 |
| BaeGI | GKGCMC | 3 cut(s) | 1771, 2014, 2925 |
| BalI | TGGCCA | 1 cut(s) | 1547 |
| BanI | GGYRCC | 1 cut(s) | 2266 |
| BauI | CACGAG | 1 cut(s) | 821 |
| BbsI | GAAGAC | 6 cut(s) | 26, 150, 318, 1083, 1843, 3090 |
| Bbv12I | GWGCWC | 4 cut(s) | 1771, 2416, 2522, 2925 |
| BceAI | ACGGC | 1 cut(s) | 413 |
| BciT130I | CCWGG | 5 cut(s) | 947, 1544, 1731, 2088, 2205 |
| BciVI | GTATCC | 1 cut(s) | 1752 |
| BclI | TGATCA | 4 cut(s) | 883, 901, 1231, 2761 |
| BcnI | CCSGG | 2 cut(s) | 2632, 2851 |
| BcoDI | GTCTC | 3 cut(s) | 670, 676, 1275 |
| BcuI | ACTAGT | 1 cut(s) | 2983 |
| BfaI | CTAG | 6 cut(s) | 263, 354, 1665, 2027, 2295, 2984 |
| BfmI | CTRYAG | 3 cut(s) | 1552, 1881, 2876 |
| BfrI | CTTAAG | 2 cut(s) | 661, 1241 |
| BfuAI | ACCTGC | 1 cut(s) | 2374 |
| BfuI | GTATCC | 1 cut(s) | 1752 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1406 |
| BglII | AGATCT | 1 cut(s) | 1890 |
| BmcAI | AGTACT | 1 cut(s) | 2988 |
| Bme1390I | CCNGG | 7 cut(s) | 947, 1544, 1731, 2088, 2205, 2632, 2851 |
| Bme18I | GGWCC | 5 cut(s) | 943, 997, 1587, 2356, 2728 |
| BmeT110I | CYCGRG | 3 cut(s) | 673, 2116, 2426 |
| BmgT120I | GGNCC | 5 cut(s) | 943, 997, 1587, 2356, 2728 |
| BmiI | GGNNCC | 4 cut(s) | 944, 1830, 2268, 2358 |
| BmrFI | CCNGG | 7 cut(s) | 947, 1544, 1731, 2088, 2205, 2632, 2851 |
| BmsI | GCATC | 8 cut(s) | 36, 286, 865, 1120, 1129, 1267, 1669, 3101 |
| BpiI | GAAGAC | 6 cut(s) | 26, 150, 318, 1083, 1843, 3090 |
| BpmI | CTGGAG | 2 cut(s) | 554, 1986 |
| Bpu14I | TTCGAA | 1 cut(s) | 622 |
| BpuEI | CTTGAG | 4 cut(s) | 48, 1140, 1395, 3056 |
| BpuMI | CCSGG | 2 cut(s) | 2632, 2851 |
| BsaAI | YACGTR | 2 cut(s) | 1224, 2015 |
| BsaJI | CCNNGG | 4 cut(s) | 2117, 2204, 2583, 2997 |
| BsaWI | WCCGGW | 1 cut(s) | 2730 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 123, 153, 899, 929, 1305, 1335 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1825, 2123, 2584, 2939, 3073 |
| Bse1I | ACTGG | 5 cut(s) | 537, 717, 1291, 1745, 1864 |
| Bse3DI | GCAATG | 5 cut(s) | 16, 87, 99, 264, 3135 |
| BseAI | TCCGGA | 1 cut(s) | 2730 |
| BseBI | CCWGG | 5 cut(s) | 947, 1544, 1731, 2088, 2205 |
| BseDI | CCNNGG | 4 cut(s) | 2117, 2204, 2583, 2997 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1825, 2123, 2584, 2939, 3073 |
| BseMI | GCAATG | 5 cut(s) | 16, 87, 99, 264, 3135 |
| BseMII | CTCAG | 4 cut(s) | 477, 1065, 2714, 2963 |
| BseNI | ACTGG | 5 cut(s) | 537, 717, 1291, 1745, 1864 |
| BseRI | GAGGAG | 2 cut(s) | 872, 3045 |
| BseSI | GKGCMC | 3 cut(s) | 1771, 2014, 2925 |
| BsgI | GTGCAG | 1 cut(s) | 546 |
| Bsh1236I | CGCG | 2 cut(s) | 1521, 1633 |
| BshFI | GGCC | 2 cut(s) | 428, 1547 |
| BshNI | GGYRCC | 1 cut(s) | 2266 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1771, 2416, 2522, 2925 |
| BsiHKCI | CYCGRG | 3 cut(s) | 673, 2116, 2426 |
| BsiSI | CCGG | 3 cut(s) | 2631, 2731, 2850 |
| BslFI | GGGAC | 3 cut(s) | 956, 2565, 2787 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1825, 2123, 2584, 2939, 3073 |
| BsmAI | GTCTC | 3 cut(s) | 670, 676, 1275 |
| BsmFI | GGGAC | 3 cut(s) | 956, 2565, 2787 |
| BsmI | GAATGC | 1 cut(s) | 1515 |
| BsnI | GGCC | 2 cut(s) | 428, 1547 |
| BsoBI | CYCGRG | 3 cut(s) | 673, 2116, 2426 |
| Bsp119I | TTCGAA | 1 cut(s) | 622 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1771, 2014, 2416, 2522, 2925 |
| Bsp13I | TCCGGA | 1 cut(s) | 2730 |
| Bsp1407I | TGTACA | 1 cut(s) | 2223 |
| BspACI | CCGC | 4 cut(s) | 68, 1633, 2603, 2861 |
| BspANI | GGCC | 2 cut(s) | 428, 1547 |
| BspCNI | CTCAG | 4 cut(s) | 478, 1064, 2713, 2962 |
| BspEI | TCCGGA | 1 cut(s) | 2730 |
| BspFNI | CGCG | 2 cut(s) | 1521, 1633 |
| BspHI | TCATGA | 1 cut(s) | 2329 |
| BspLI | GGNNCC | 4 cut(s) | 944, 1830, 2268, 2358 |
| BspMAI | CTGCAG | 1 cut(s) | 1885 |
| BspMI | ACCTGC | 1 cut(s) | 2374 |
| BspPI | GGATC | 5 cut(s) | 1810, 1921, 2078, 2468, 2896 |
| BspQI | GCTCTTC | 2 cut(s) | 619, 1248 |
| BspT104I | TTCGAA | 1 cut(s) | 622 |
| BspT107I | GGYRCC | 1 cut(s) | 2266 |
| BspTI | CTTAAG | 2 cut(s) | 661, 1241 |
| BsrDI | GCAATG | 5 cut(s) | 16, 87, 99, 264, 3135 |
| BsrGI | TGTACA | 1 cut(s) | 2223 |
| BsrI | ACTGG | 5 cut(s) | 537, 717, 1291, 1745, 1864 |
| BssECI | CCNNGG | 4 cut(s) | 2117, 2204, 2583, 2997 |
| BssSI | CACGAG | 1 cut(s) | 821 |
| BssT1I | CCWWGG | 2 cut(s) | 2583, 2997 |
| Bst2BI | CACGAG | 1 cut(s) | 821 |
| Bst2UI | CCWGG | 5 cut(s) | 947, 1544, 1731, 2088, 2205 |
| Bst4CI | ACNGT | 8 cut(s) | 1486, 1556, 1608, 2266, 2579, 2672, 2902, 2920 |
| BstAFI | CTTAAG | 2 cut(s) | 661, 1241 |
| BstAUI | TGTACA | 1 cut(s) | 2223 |
| BstBAI | YACGTR | 2 cut(s) | 1224, 2015 |
| BstBI | TTCGAA | 1 cut(s) | 622 |
| BstC8I | GCNNGC | 5 cut(s) | 7, 1047, 1523, 1549, 2307 |
| BstDEI | CTNAG | 6 cut(s) | 486, 722, 1051, 2157, 2700, 2949 |
| BstEII | GGTNACC | 1 cut(s) | 2642 |
| BstFNI | CGCG | 2 cut(s) | 1521, 1633 |
| BstHHI | GCGC | 2 cut(s) | 1521, 1633 |
| BstMAI | GTCTC | 3 cut(s) | 670, 676, 1275 |
| BstNI | CCWGG | 5 cut(s) | 947, 1544, 1731, 2088, 2205 |
| BstNSI | RCATGY | 1 cut(s) | 3010 |
| BstPI | GGTNACC | 1 cut(s) | 2642 |
| BstSCI | CCNGG | 7 cut(s) | 945, 1542, 1729, 2086, 2203, 2630, 2849 |
| BstSFI | CTRYAG | 3 cut(s) | 1552, 1881, 2876 |
| BstSLI | GKGCMC | 3 cut(s) | 1771, 2014, 2925 |
| BstSNI | TACGTA | 1 cut(s) | 1224 |
| BstUI | CGCG | 2 cut(s) | 1521, 1633 |
| BstV2I | GAAGAC | 6 cut(s) | 26, 150, 318, 1083, 1843, 3090 |
| BstX2I | RGATCY | 2 cut(s) | 1890, 1926 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1007, 1331 |
| BstYI | RGATCY | 2 cut(s) | 1890, 1926 |
| BsuI | GTATCC | 1 cut(s) | 1752 |
| BsuRI | GGCC | 2 cut(s) | 428, 1547 |
| BtsI | GCAGTG | 2 cut(s) | 2226, 2865 |
| BtsIMutI | CAGTG | 8 cut(s) | 1284, 1561, 1857, 2226, 2708, 2865, 2907, 2925 |
| BveI | ACCTGC | 1 cut(s) | 2374 |
| Cac8I | GCNNGC | 5 cut(s) | 7, 1047, 1523, 1549, 2307 |
| CaiI | CAGNNNCTG | 1 cut(s) | 347 |
| CciI | TCATGA | 1 cut(s) | 2329 |
| CfoI | GCGC | 2 cut(s) | 1521, 1633 |
| Cfr13I | GGNCC | 5 cut(s) | 943, 997, 1587, 2356, 2728 |
| CseI | GACGC | 2 cut(s) | 1799, 3095 |
| Csp6I | GTAC | 8 cut(s) | 799, 1362, 1470, 1920, 2224, 2276, 2893, 2987 |
| CviQI | GTAC | 8 cut(s) | 799, 1362, 1470, 1920, 2224, 2276, 2893, 2987 |
| DdeI | CTNAG | 6 cut(s) | 486, 722, 1051, 2157, 2700, 2949 |
| DraI | TTTAAA | 1 cut(s) | 546 |
| EaeI | YGGCCR | 2 cut(s) | 426, 1545 |
| Eco105I | TACGTA | 1 cut(s) | 1224 |
| Eco130I | CCWWGG | 2 cut(s) | 2583, 2997 |
| Eco32I | GATATC | 3 cut(s) | 1662, 2755, 2800 |
| Eco47I | GGWCC | 5 cut(s) | 943, 997, 1587, 2356, 2728 |
| Eco57I | CTGAAG | 7 cut(s) | 324, 489, 1175, 1458, 1511, 1794, 2391 |
| Eco88I | CYCGRG | 3 cut(s) | 673, 2116, 2426 |
| Eco91I | GGTNACC | 1 cut(s) | 2642 |
| EcoO109I | RGGNCCY | 2 cut(s) | 943, 1587 |
| EcoO65I | GGTNACC | 1 cut(s) | 2642 |
| EcoRI | GAATTC | 2 cut(s) | 867, 2325 |
| EcoRII | CCWGG | 5 cut(s) | 945, 1542, 1729, 2086, 2203 |
| EcoRV | GATATC | 3 cut(s) | 1662, 2755, 2800 |
| EcoT14I | CCWWGG | 2 cut(s) | 2583, 2997 |
| ErhI | CCWWGG | 2 cut(s) | 2583, 2997 |
| FaqI | GGGAC | 3 cut(s) | 956, 2565, 2787 |
| FauNDI | CATATG | 2 cut(s) | 283, 1943 |
| FbaI | TGATCA | 4 cut(s) | 883, 901, 1231, 2761 |
| FblI | GTMKAC | 1 cut(s) | 445 |
| FspBI | CTAG | 6 cut(s) | 263, 354, 1665, 2027, 2295, 2984 |
| GlaI | GCGC | 2 cut(s) | 1520, 1632 |
| GsuI | CTGGAG | 2 cut(s) | 554, 1986 |
| HaeIII | GGCC | 2 cut(s) | 428, 1547 |
| HapII | CCGG | 3 cut(s) | 2631, 2731, 2850 |
| HgaI | GACGC | 2 cut(s) | 1799, 3095 |
| HhaI | GCGC | 2 cut(s) | 1521, 1633 |
| Hin6I | GCGC | 2 cut(s) | 1519, 1631 |
| HinP1I | GCGC | 2 cut(s) | 1519, 1631 |
| HincII | GTYRAC | 2 cut(s) | 79, 1596 |
| HindII | GTYRAC | 2 cut(s) | 79, 1596 |
| HindIII | AAGCTT | 1 cut(s) | 987 |
| HinfI | GANTC | 9 cut(s) | 350, 488, 950, 967, 1100, 2132, 2287, 2317, 2825 |
| HpaI | GTTAAC | 1 cut(s) | 79 |
| HpaII | CCGG | 3 cut(s) | 2631, 2731, 2850 |
| HphI | GGTGA | 6 cut(s) | 105, 176, 773, 1127, 1544, 2654 |
| Hpy166II | GTNNAC | 8 cut(s) | 79, 446, 1596, 1769, 1973, 2226, 2668, 2923 |
| Hpy8I | GTNNAC | 8 cut(s) | 79, 446, 1596, 1769, 1973, 2226, 2668, 2923 |
| Hpy99I | CGWCG | 1 cut(s) | 857 |
| HpyAV | CCTTC | 5 cut(s) | 637, 1731, 2000, 2445, 2674 |
| HpyCH4III | ACNGT | 8 cut(s) | 1486, 1556, 1608, 2266, 2579, 2672, 2902, 2920 |
| HpyCH4IV | ACGT | 7 cut(s) | 450, 590, 852, 1223, 2014, 2993, 3078 |
| HpyF3I | CTNAG | 6 cut(s) | 486, 722, 1051, 2157, 2700, 2949 |
| HpySE526I | ACGT | 7 cut(s) | 450, 590, 852, 1223, 2014, 2993, 3078 |
| HspAI | GCGC | 2 cut(s) | 1519, 1631 |
| Kpn2I | TCCGGA | 1 cut(s) | 2730 |
| Ksp22I | TGATCA | 4 cut(s) | 883, 901, 1231, 2761 |
| KspAI | GTTAAC | 1 cut(s) | 79 |
| LguI | GCTCTTC | 2 cut(s) | 619, 1248 |
| LmnI | GCTCC | 7 cut(s) | 535, 781, 1828, 2525, 2733, 3058, 3113 |
| LweI | GCATC | 8 cut(s) | 36, 286, 865, 1120, 1129, 1267, 1669, 3101 |
| MaeI | CTAG | 6 cut(s) | 263, 354, 1665, 2027, 2295, 2984 |
| MaeII | ACGT | 7 cut(s) | 450, 590, 852, 1223, 2014, 2993, 3078 |
| MaeIII | GTNAC | 5 cut(s) | 509, 1334, 1801, 2642, 3016 |
| MfeI | CAATTG | 3 cut(s) | 2058, 2556, 2765 |
| MflI | RGATCY | 2 cut(s) | 1890, 1926 |
| MhlI | GDGCHC | 5 cut(s) | 1771, 2014, 2416, 2522, 2925 |
| MlsI | TGGCCA | 1 cut(s) | 1547 |
| MluNI | TGGCCA | 1 cut(s) | 1547 |
| MlyI | GAGTC | 2 cut(s) | 497, 2326 |
| Mox20I | TGGCCA | 1 cut(s) | 1547 |
| MroI | TCCGGA | 1 cut(s) | 2730 |
| MroXI | GAANNNNTTC | 2 cut(s) | 463, 971 |
| MscI | TGGCCA | 1 cut(s) | 1547 |
| MseI | TTAA | 8 cut(s) | 78, 545, 662, 689, 1022, 1242, 1937, 2235 |
| MslI | CAYNNNNRTG | 1 cut(s) | 92 |
| Msp20I | TGGCCA | 1 cut(s) | 1547 |
| MspCI | CTTAAG | 2 cut(s) | 661, 1241 |
| MspI | CCGG | 3 cut(s) | 2631, 2731, 2850 |
| MspR9I | CCNGG | 7 cut(s) | 947, 1544, 1731, 2088, 2205, 2632, 2851 |
| MunI | CAATTG | 3 cut(s) | 2058, 2556, 2765 |
| Mva1269I | GAATGC | 1 cut(s) | 1515 |
| MvaI | CCWGG | 5 cut(s) | 947, 1544, 1731, 2088, 2205 |
| MvnI | CGCG | 2 cut(s) | 1521, 1633 |
| NciI | CCSGG | 2 cut(s) | 2632, 2851 |
| NdeI | CATATG | 2 cut(s) | 283, 1943 |
| NlaIV | GGNNCC | 4 cut(s) | 944, 1830, 2268, 2358 |
| NmeAIII | GCCGAG | 1 cut(s) | 2985 |
| NmuCI | GTSAC | 2 cut(s) | 509, 2642 |
| NspI | RCATGY | 1 cut(s) | 3010 |
| NspV | TTCGAA | 1 cut(s) | 622 |
| PaeR7I | CTCGAG | 1 cut(s) | 673 |
| PagI | TCATGA | 1 cut(s) | 2329 |
| PaqCI | CACCTGC | 1 cut(s) | 2374 |
| PciSI | GCTCTTC | 2 cut(s) | 619, 1248 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2182 |
| PctI | GAATGC | 1 cut(s) | 1515 |
| PdmI | GAANNNNTTC | 2 cut(s) | 463, 971 |
| PfeI | GAWTC | 7 cut(s) | 350, 950, 967, 1100, 2132, 2287, 2825 |
| PflFI | GACNNNGTC | 1 cut(s) | 1591 |
| PfoI | TCCNGGA | 1 cut(s) | 1729 |
| PleI | GAGTC | 2 cut(s) | 496, 2325 |
| PpsI | GAGTC | 2 cut(s) | 496, 2325 |
| Ppu21I | YACGTR | 2 cut(s) | 1224, 2015 |
| PpuMI | RGGWCCY | 2 cut(s) | 943, 1587 |
| PshBI | ATTAAT | 1 cut(s) | 1937 |
| Psp1406I | AACGTT | 1 cut(s) | 590 |
| Psp5II | RGGWCCY | 2 cut(s) | 943, 1587 |
| Psp6I | CCWGG | 5 cut(s) | 945, 1542, 1729, 2086, 2203 |
| PspEI | GGTNACC | 1 cut(s) | 2642 |
| PspGI | CCWGG | 5 cut(s) | 945, 1542, 1729, 2086, 2203 |
| PspN4I | GGNNCC | 4 cut(s) | 944, 1830, 2268, 2358 |
| PspPI | GGNCC | 5 cut(s) | 943, 997, 1587, 2356, 2728 |
| PspPPI | RGGWCCY | 2 cut(s) | 943, 1587 |
| PstI | CTGCAG | 1 cut(s) | 1885 |
| PstNI | CAGNNNCTG | 1 cut(s) | 347 |
| PsuI | RGATCY | 2 cut(s) | 1890, 1926 |
| PsyI | GACNNNGTC | 1 cut(s) | 1591 |
| RsaI | GTAC | 8 cut(s) | 800, 1363, 1471, 1921, 2225, 2277, 2894, 2988 |
| RsaNI | GTAC | 8 cut(s) | 799, 1362, 1470, 1920, 2224, 2276, 2893, 2987 |
| RseI | CAYNNNNRTG | 1 cut(s) | 92 |
| SapI | GCTCTTC | 2 cut(s) | 619, 1248 |
| SaqAI | TTAA | 8 cut(s) | 78, 545, 662, 689, 1022, 1242, 1937, 2235 |
| Sau96I | GGNCC | 5 cut(s) | 943, 997, 1587, 2356, 2728 |
| ScaI | AGTACT | 1 cut(s) | 2988 |
| SchI | GAGTC | 2 cut(s) | 497, 2326 |
| ScrFI | CCNGG | 7 cut(s) | 947, 1544, 1731, 2088, 2205, 2632, 2851 |
| SduI | GDGCHC | 5 cut(s) | 1771, 2014, 2416, 2522, 2925 |
| SfaNI | GCATC | 8 cut(s) | 36, 286, 865, 1120, 1129, 1267, 1669, 3101 |
| SfcI | CTRYAG | 3 cut(s) | 1552, 1881, 2876 |
| Sfr274I | CTCGAG | 1 cut(s) | 673 |
| SfuI | TTCGAA | 1 cut(s) | 622 |
| SinI | GGWCC | 5 cut(s) | 943, 997, 1587, 2356, 2728 |
| SlaI | CTCGAG | 1 cut(s) | 673 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 92 |
| SmlI | CTYRAG | 7 cut(s) | 63, 661, 673, 1155, 1241, 1410, 3071 |
| SmoI | CTYRAG | 7 cut(s) | 63, 661, 673, 1155, 1241, 1410, 3071 |
| SnaBI | TACGTA | 1 cut(s) | 1224 |
| SpeI | ACTAGT | 1 cut(s) | 2983 |
| SsiI | CCGC | 4 cut(s) | 68, 1633, 2603, 2861 |
| SspI | AATATT | 1 cut(s) | 1989 |
| SspMI | CTAG | 6 cut(s) | 263, 354, 1665, 2027, 2295, 2984 |
| StyD4I | CCNGG | 7 cut(s) | 945, 1542, 1729, 2086, 2203, 2630, 2849 |
| StyI | CCWWGG | 2 cut(s) | 2583, 2997 |
| TaaI | ACNGT | 8 cut(s) | 1486, 1556, 1608, 2266, 2579, 2672, 2902, 2920 |
| TaiI | ACGT | 7 cut(s) | 453, 593, 855, 1226, 2017, 2996, 3081 |
| TaqI | TCGA | 8 cut(s) | 622, 674, 855, 1456, 1639, 2346, 2486, 2781 |
| TatI | WGTACW | 4 cut(s) | 1469, 2223, 2275, 2986 |
| TauI | GCSGC | 1 cut(s) | 71 |
| TfiI | GAWTC | 7 cut(s) | 350, 950, 967, 1100, 2132, 2287, 2825 |
| Tru1I | TTAA | 8 cut(s) | 78, 545, 662, 689, 1022, 1242, 1937, 2235 |
| Tru9I | TTAA | 8 cut(s) | 78, 545, 662, 689, 1022, 1242, 1937, 2235 |
| TscAI | CASTG | 8 cut(s) | 1291, 1561, 1864, 2233, 2708, 2872, 2907, 2925 |
| TseFI | GTSAC | 2 cut(s) | 509, 2642 |
| Tsp45I | GTSAC | 2 cut(s) | 509, 2642 |
| TspGWI | ACGGA | 4 cut(s) | 580, 794, 1919, 2747 |
| TspRI | CASTG | 8 cut(s) | 1291, 1561, 1864, 2233, 2708, 2872, 2907, 2925 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1591 |
| Vha464I | CTTAAG | 2 cut(s) | 661, 1241 |
| VneI | GTGCAC | 2 cut(s) | 1767, 2921 |
| VpaK11BI | GGWCC | 5 cut(s) | 943, 997, 1587, 2356, 2728 |
| VspI | ATTAAT | 1 cut(s) | 1937 |
| XapI | RAATTY | 6 cut(s) | 189, 867, 1025, 1688, 2325, 2620 |
| XbaI | TCTAGA | 1 cut(s) | 353 |
| XceI | RCATGY | 1 cut(s) | 3010 |
| XhoI | CTCGAG | 1 cut(s) | 673 |
| XmiI | GTMKAC | 1 cut(s) | 445 |
| XmnI | GAANNNNTTC | 2 cut(s) | 463, 971 |
| XspI | CTAG | 6 cut(s) | 263, 354, 1665, 2027, 2295, 2984 |
| ZrmI | AGTACT | 1 cut(s) | 2988 |