Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000463

Physical Location & Seq

Genomic Coordinates Forward (+)

3557399 .. 3557846

Gene Structure 448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06761.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTTAAAGTACAGGACAAGTGGTCTGGGGAGAAAGATAGCAGAGATGATTATCTGTCCCATATATGGAAACTTGCCTTCTGAGCAGCAAGCAAAAATTTTTGATCCCACACCTGAAGGGGCAAGAAAGGTTGTCCTTGCCACAAACATAGCTGAAACTTCGCTGACTATTGATGGGATCAAATATGTTATCGACTGTGGTTATTGCAAGATGAAGTCCTACAATCCAAGGACTGGGATGGAGTCATTGCAAGTCACTCCCATCTCAAAGGCATCGGCAAGGCAGAGGGCAGGTCGATCTGGTCGAACAGGCCCTGGCTTAAAAGTCTTGGTATTCATGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

115

Amino Acids

12.46

Weight (kDa)

9.79

Isoelectric Point (pI)

23.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	15 - 104	4.9e-13	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca	FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica	MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica	Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis	pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis	RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata	RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora	Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa	Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha	Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana	Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	281
AccB7I	CCANNNNNTGG	1 cut(s)	233
AclWI	GGATC	2 cut(s)	98, 185
AcsI	RAATTY	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	65, 233
AhdI	GACNNNNNGTC	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
AlwI	GGATC	2 cut(s)	98, 185
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	3 cut(s)	167, 232, 269
BciT130I	CCWGG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	281
BisI	GCNGC	1 cut(s)	86
BlsI	GCNGC	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	315
BmeRI	GACNNNNNGTC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	311
BmrFI	CCNGG	1 cut(s)	315
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	281
BmuI	ACTGGG	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	227, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 233
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	245
Bse8I	GATNNNNATC	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	227, 313
BseGI	GGATG	1 cut(s)	243
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	2 cut(s)	65, 233
BseMI	GCAATG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	2 cut(s)	65, 233
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	312
Bsp143I	GATC	3 cut(s)	103, 177, 296
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	281
BspPI	GGATC	2 cut(s)	98, 185
BsrDI	GCAATG	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	227, 313
BssMI	GATC	3 cut(s)	103, 177, 296
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	3 cut(s)	106, 180, 299
BstMBI	GATC	3 cut(s)	103, 177, 296
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	90
CaiI	CAGNNNCTG	1 cut(s)	314
CciI	TCATGA	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	3 cut(s)	152, 312, 318
CviKI_1	RGCY	3 cut(s)	152, 312, 318
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	3 cut(s)	105, 179, 298
DpnII	GATC	3 cut(s)	103, 177, 296
DriI	GACNNNNNGTC	1 cut(s)	21
Eam1105I	GACNNNNNGTC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	1 cut(s)	340
FaiI	YATR	6 cut(s)	62, 64, 66, 149, 186, 338
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	86
FokI	GGATG	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	312
Hin1II	CATG	1 cut(s)	340
HinfI	GANTC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	337
HpyAV	CCTTC	2 cut(s)	87, 110
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	207, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	340
Kzo9I	GATC	3 cut(s)	103, 177, 296
LpnPI	CCDG	8 cut(s)	11, 126, 219, 276, 285, 294, 300, 327
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	105, 179, 298
MboI	GATC	3 cut(s)	103, 177, 296
MluCI	AATT	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	1 cut(s)	279
MseI	TTAA	3 cut(s)	5, 320, 343
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	3 cut(s)	103, 177, 296
NlaIII	CATG	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	253
PagI	TCATGA	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	87
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	311
PstNI	CAGNNNCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SaqAI	TTAA	3 cut(s)	5, 320, 343
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	3 cut(s)	103, 177, 296
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	315
SetI	ASST	4 cut(s)	115, 132, 154, 295
SfaNI	GCATC	1 cut(s)	281
Sse9I	AATT	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	3 cut(s)	192, 295, 304
TasI	AATT	1 cut(s)	96
TatI	WGTACW	1 cut(s)	9
Tru1I	TTAA	3 cut(s)	5, 320, 343
Tru9I	TTAA	3 cut(s)	5, 320, 343
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	2 cut(s)	227, 325
Van91I	CCANNNNNTGG	1 cut(s)	233
XapI	RAATTY	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.