Pre-mRNA-splicing factor ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Helicase_C | PF00271 | 695 - 821 | 1.2e-11 | Helicase conserved C-terminal domain |
| WHD_HA2 | PF04408 | 883 - 911 | 1.1e-09 | Helicase associated domain (HA2), winged-helix |
| HA2_C | PF21010 | 912 - 973 | 5.2e-11 | Helicase associated domain (HA2), ratchet-like |
| OB_NTP_bind | PF07717 | 1030 - 1107 | 7.8e-24 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3089 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2855 |
| Acc36I | ACCTGC | 2 cut(s) | 2432, 3052 |
| Acc65I | GGTACC | 1 cut(s) | 2527 |
| AccB1I | GGYRCC | 1 cut(s) | 2527 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2384, 3241 |
| AccBSI | CCGCTC | 1 cut(s) | 793 |
| AccI | GTMKAC | 1 cut(s) | 2710 |
| AccII | CGCG | 3 cut(s) | 2291, 3006, 3381 |
| AclWI | GGATC | 3 cut(s) | 1272, 2336, 2729 |
| AcoI | YGGCCR | 1 cut(s) | 1194 |
| AcsI | RAATTY | 7 cut(s) | 204, 233, 434, 1784, 1986, 2247, 2881 |
| AcuI | CTGAAG | 5 cut(s) | 462, 891, 2286, 2663, 3305 |
| AdeI | CACNNNGTG | 1 cut(s) | 2672 |
| AfaI | GTAC | 6 cut(s) | 201, 341, 696, 1133, 2529, 2774 |
| AflIII | ACRYGT | 1 cut(s) | 428 |
| AgeI | ACCGGT | 1 cut(s) | 1547 |
| AhlI | ACTAGT | 1 cut(s) | 937 |
| AjnI | CCWGG | 7 cut(s) | 617, 699, 1215, 1452, 2095, 2347, 2464 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1424, 1456 |
| AleI | CACNNNNGTG | 2 cut(s) | 119, 2965 |
| Alw21I | GWGCWC | 3 cut(s) | 132, 1625, 2568 |
| Alw26I | GTCTC | 5 cut(s) | 375, 2939, 3015, 3070, 3262 |
| Alw44I | GTGCAC | 1 cut(s) | 1621 |
| AlwI | GGATC | 3 cut(s) | 1272, 2336, 2729 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2039 |
| AoxI | GGCC | 7 cut(s) | 111, 657, 1194, 1590, 1836, 2646, 3096 |
| ApaLI | GTGCAC | 1 cut(s) | 1621 |
| ApeKI | GCWGC | 5 cut(s) | 512, 833, 1643, 1658, 2054 |
| ApoI | RAATTY | 7 cut(s) | 204, 233, 434, 1784, 1986, 2247, 2881 |
| AsiGI | ACCGGT | 1 cut(s) | 1547 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 644, 1852 |
| Asp718I | GGTACC | 1 cut(s) | 2527 |
| AspLEI | GCGC | 5 cut(s) | 810, 3006, 3008, 3381, 3383 |
| AspS9I | GGNCC | 6 cut(s) | 411, 1213, 1345, 1837, 2462, 2617 |
| AsuC2I | CCSGG | 1 cut(s) | 1992 |
| AsuHPI | GGTGA | 9 cut(s) | 74, 535, 596, 700, 1259, 1394, 1553, 1805, 2702 |
| AvaII | GGWCC | 5 cut(s) | 411, 1213, 1345, 2462, 2617 |
| BaeGI | GKGCMC | 2 cut(s) | 465, 1625 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1562, 1595 |
| BalI | TGGCCA | 1 cut(s) | 1196 |
| BanI | GGYRCC | 1 cut(s) | 2527 |
| BanII | GRGCYC | 2 cut(s) | 132, 2259 |
| BauI | CACGAG | 3 cut(s) | 86, 1586, 3366 |
| BbsI | GAAGAC | 3 cut(s) | 284, 542, 585 |
| Bbv12I | GWGCWC | 3 cut(s) | 132, 1625, 2568 |
| BbvI | GCAGC | 5 cut(s) | 499, 845, 1630, 1645, 2066 |
| BciT130I | CCWGG | 7 cut(s) | 619, 701, 1217, 1454, 2097, 2349, 2466 |
| BciVI | GTATCC | 2 cut(s) | 1589, 2597 |
| BclI | TGATCA | 1 cut(s) | 781 |
| BcnI | CCSGG | 1 cut(s) | 1992 |
| BcoDI | GTCTC | 5 cut(s) | 375, 2939, 3015, 3070, 3262 |
| BcuI | ACTAGT | 1 cut(s) | 937 |
| BfaI | CTAG | 2 cut(s) | 938, 3009 |
| BfmI | CTRYAG | 3 cut(s) | 1207, 1289, 1813 |
| BfuAI | ACCTGC | 2 cut(s) | 2432, 3052 |
| BfuI | GTATCC | 2 cut(s) | 1589, 2597 |
| BglII | AGATCT | 1 cut(s) | 1801 |
| BisI | GCNGC | 5 cut(s) | 513, 834, 1644, 1659, 2055 |
| BlsI | GCNGC | 5 cut(s) | 514, 835, 1645, 1660, 2056 |
| Bme1390I | CCNGG | 8 cut(s) | 619, 701, 1217, 1454, 1992, 2097, 2349, 2466 |
| Bme18I | GGWCC | 5 cut(s) | 411, 1213, 1345, 2462, 2617 |
| BmgT120I | GGNCC | 6 cut(s) | 411, 1213, 1345, 1837, 2462, 2617 |
| BmiI | GGNNCC | 4 cut(s) | 1214, 2463, 2529, 2619 |
| BmrFI | CCNGG | 8 cut(s) | 619, 701, 1217, 1454, 1992, 2097, 2349, 2466 |
| BmrI | ACTGGG | 2 cut(s) | 2394, 2901 |
| BmsI | GCATC | 8 cut(s) | 35, 85, 544, 1135, 1376, 1930, 2041, 2432 |
| BmuI | ACTGGG | 2 cut(s) | 2394, 2901 |
| BoxI | GACNNNNGTC | 1 cut(s) | 730 |
| BpiI | GAAGAC | 3 cut(s) | 284, 542, 585 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3050, 3082 |
| BpmI | CTGGAG | 5 cut(s) | 357, 439, 1004, 1436, 2118 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2176, 3196 |
| BpuEI | CTTGAG | 8 cut(s) | 56, 646, 1106, 1439, 1656, 1909, 2906, 3050 |
| BpuMI | CCSGG | 1 cut(s) | 1992 |
| BsaAI | YACGTR | 1 cut(s) | 431 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1326, 1518 |
| BsaI | GGTCTC | 3 cut(s) | 2939, 3015, 3070 |
| BsaJI | CCNNGG | 8 cut(s) | 1789, 1991, 2347, 2348, 2378, 2581, 2649, 3255 |
| BsaWI | WCCGGW | 2 cut(s) | 184, 1547 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2446, 2476 |
| Bse118I | RCCGGY | 3 cut(s) | 1405, 1547, 2478 |
| Bse1I | ACTGG | 6 cut(s) | 15, 602, 987, 1387, 2389, 2896 |
| Bse3DI | GCAATG | 4 cut(s) | 305, 522, 2799, 2915 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1326, 1518 |
| BseBI | CCWGG | 7 cut(s) | 619, 701, 1217, 1454, 2097, 2349, 2466 |
| BseDI | CCNNGG | 8 cut(s) | 1789, 1991, 2347, 2348, 2378, 2581, 2649, 3255 |
| BseJI | GATNNNNATC | 2 cut(s) | 1326, 1518 |
| BseMI | GCAATG | 4 cut(s) | 305, 522, 2799, 2915 |
| BseMII | CTCAG | 9 cut(s) | 261, 335, 1589, 1935, 2223, 2499, 2712, 3210, 3221 |
| BseNI | ACTGG | 6 cut(s) | 15, 602, 987, 1387, 2389, 2896 |
| BsePI | GCGCGC | 2 cut(s) | 3004, 3379 |
| BseRI | GAGGAG | 3 cut(s) | 167, 406, 896 |
| BseSI | GKGCMC | 2 cut(s) | 465, 1625 |
| BseXI | GCAGC | 5 cut(s) | 499, 845, 1630, 1645, 2066 |
| BseYI | CCCAGC | 2 cut(s) | 1220, 3191 |
| BsgI | GTGCAG | 1 cut(s) | 2052 |
| Bsh1236I | CGCG | 3 cut(s) | 2291, 3006, 3381 |
| BshFI | GGCC | 7 cut(s) | 113, 659, 1196, 1592, 1838, 2648, 3098 |
| BshNI | GGYRCC | 1 cut(s) | 2527 |
| BshTI | ACCGGT | 1 cut(s) | 1547 |
| BsiHKAI | GWGCWC | 3 cut(s) | 132, 1625, 2568 |
| BsiSI | CCGG | 6 cut(s) | 185, 1406, 1548, 1593, 1991, 2479 |
| BslFI | GGGAC | 6 cut(s) | 718, 839, 1226, 2193, 2194, 3048 |
| BsmAI | GTCTC | 5 cut(s) | 375, 2939, 3015, 3070, 3262 |
| BsmFI | GGGAC | 6 cut(s) | 718, 839, 1226, 2193, 2194, 3048 |
| BsnI | GGCC | 7 cut(s) | 113, 659, 1196, 1592, 1838, 2648, 3098 |
| Bso31I | GGTCTC | 3 cut(s) | 2939, 3015, 3070 |
| Bsp1286I | GDGCHC | 5 cut(s) | 132, 465, 1625, 2259, 2568 |
| Bsp1407I | TGTACA | 1 cut(s) | 694 |
| Bsp68I | TCGCGA | 1 cut(s) | 2291 |
| BspANI | GGCC | 7 cut(s) | 113, 659, 1196, 1592, 1838, 2648, 3098 |
| BspCNI | CTCAG | 9 cut(s) | 260, 334, 1588, 1936, 2224, 2500, 2713, 3209, 3220 |
| BspFNI | CGCG | 3 cut(s) | 2291, 3006, 3381 |
| BspLI | GGNNCC | 4 cut(s) | 1214, 2463, 2529, 2619 |
| BspMAI | CTGCAG | 1 cut(s) | 1293 |
| BspMI | ACCTGC | 2 cut(s) | 2432, 3052 |
| BspPI | GGATC | 3 cut(s) | 1272, 2336, 2729 |
| BspQI | GCTCTTC | 1 cut(s) | 60 |
| BspT107I | GGYRCC | 1 cut(s) | 2527 |
| BspTNI | GGTCTC | 3 cut(s) | 2939, 3015, 3070 |
| BsrBI | CCGCTC | 1 cut(s) | 793 |
| BsrDI | GCAATG | 4 cut(s) | 305, 522, 2799, 2915 |
| BsrFI | RCCGGY | 3 cut(s) | 1405, 1547, 2478 |
| BsrGI | TGTACA | 1 cut(s) | 694 |
| BsrI | ACTGG | 6 cut(s) | 15, 602, 987, 1387, 2389, 2896 |
| BssAI | RCCGGY | 3 cut(s) | 1405, 1547, 2478 |
| BssECI | CCNNGG | 8 cut(s) | 1789, 1991, 2347, 2348, 2378, 2581, 2649, 3255 |
| BssHII | GCGCGC | 2 cut(s) | 3004, 3379 |
| BssSI | CACGAG | 3 cut(s) | 86, 1586, 3366 |
| BssT1I | CCWWGG | 5 cut(s) | 1789, 2378, 2581, 2649, 3255 |
| Bst2BI | CACGAG | 3 cut(s) | 86, 1586, 3366 |
| Bst2UI | CCWGG | 7 cut(s) | 619, 701, 1217, 1454, 2097, 2349, 2466 |
| Bst4CI | ACNGT | 9 cut(s) | 645, 1747, 1817, 2527, 2658, 2840, 2877, 3160, 3178 |
| Bst6I | CTCTTC | 4 cut(s) | 60, 102, 873, 1175 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2672 |
| BstAUI | TGTACA | 1 cut(s) | 694 |
| BstBAI | YACGTR | 1 cut(s) | 431 |
| BstC8I | GCNNGC | 5 cut(s) | 327, 1104, 1810, 3006, 3381 |
| BstEII | GGTNACC | 1 cut(s) | 1382 |
| BstFNI | CGCG | 3 cut(s) | 2291, 3006, 3381 |
| BstHHI | GCGC | 5 cut(s) | 810, 3006, 3008, 3381, 3383 |
| BstMAI | GTCTC | 5 cut(s) | 375, 2939, 3015, 3070, 3262 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 805, 1036, 2036, 2672, 2870 |
| BstNI | CCWGG | 7 cut(s) | 619, 701, 1217, 1454, 2097, 2349, 2466 |
| BstNSI | RCATGY | 1 cut(s) | 1034 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 730 |
| BstPI | GGTNACC | 1 cut(s) | 1382 |
| BstSCI | CCNGG | 8 cut(s) | 617, 699, 1215, 1452, 1990, 2095, 2347, 2464 |
| BstSFI | CTRYAG | 3 cut(s) | 1207, 1289, 1813 |
| BstSLI | GKGCMC | 2 cut(s) | 465, 1625 |
| BstUI | CGCG | 3 cut(s) | 2291, 3006, 3381 |
| BstV1I | GCAGC | 5 cut(s) | 499, 845, 1630, 1645, 2066 |
| BstV2I | GAAGAC | 3 cut(s) | 284, 542, 585 |
| BstX2I | RGATCY | 1 cut(s) | 1801 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 121 |
| BstYI | RGATCY | 1 cut(s) | 1801 |
| BsuI | GTATCC | 2 cut(s) | 1589, 2597 |
| BsuRI | GGCC | 7 cut(s) | 113, 659, 1196, 1592, 1838, 2648, 3098 |
| BtgZI | GCGATG | 1 cut(s) | 2896 |
| BtsI | GCAGTG | 2 cut(s) | 1286, 2069 |
| BtsIMutI | CAGTG | 8 cut(s) | 36, 255, 1041, 1286, 1822, 1960, 2069, 2889 |
| BtuMI | TCGCGA | 1 cut(s) | 2291 |
| BveI | ACCTGC | 2 cut(s) | 2432, 3052 |
| Cac8I | GCNNGC | 5 cut(s) | 327, 1104, 1810, 3006, 3381 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2039 |
| CfoI | GCGC | 5 cut(s) | 810, 3006, 3008, 3381, 3383 |
| Cfr10I | RCCGGY | 3 cut(s) | 1405, 1547, 2478 |
| Cfr13I | GGNCC | 6 cut(s) | 411, 1213, 1345, 1837, 2462, 2617 |
| Csp6I | GTAC | 6 cut(s) | 200, 340, 695, 1132, 2528, 2773 |
| CspAI | ACCGGT | 1 cut(s) | 1547 |
| CviQI | GTAC | 6 cut(s) | 200, 340, 695, 1132, 2528, 2773 |
| DraI | TTTAAA | 1 cut(s) | 960 |
| DraIII | CACNNNGTG | 1 cut(s) | 2672 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2855 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2855 |
| EaeI | YGGCCR | 1 cut(s) | 1194 |
| Eam1104I | CTCTTC | 4 cut(s) | 60, 102, 873, 1175 |
| EarI | CTCTTC | 4 cut(s) | 60, 102, 873, 1175 |
| EciI | GGCGGA | 1 cut(s) | 1424 |
| Ecl136II | GAGCTC | 1 cut(s) | 130 |
| Eco130I | CCWWGG | 5 cut(s) | 1789, 2378, 2581, 2649, 3255 |
| Eco147I | AGGCCT | 2 cut(s) | 659, 2648 |
| Eco24I | GRGCYC | 2 cut(s) | 132, 2259 |
| Eco31I | GGTCTC | 3 cut(s) | 2939, 3015, 3070 |
| Eco47I | GGWCC | 5 cut(s) | 411, 1213, 1345, 2462, 2617 |
| Eco53kI | GAGCTC | 1 cut(s) | 130 |
| Eco57I | CTGAAG | 5 cut(s) | 462, 891, 2286, 2663, 3305 |
| Eco91I | GGTNACC | 1 cut(s) | 1382 |
| EcoICRI | GAGCTC | 1 cut(s) | 130 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1213, 2462 |
| EcoO65I | GGTNACC | 1 cut(s) | 1382 |
| EcoRI | GAATTC | 1 cut(s) | 1784 |
| EcoRII | CCWGG | 7 cut(s) | 617, 699, 1215, 1452, 2095, 2347, 2464 |
| EcoT14I | CCWWGG | 5 cut(s) | 1789, 2378, 2581, 2649, 3255 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 2 cut(s) | 132, 2259 |
| ErhI | CCWWGG | 5 cut(s) | 1789, 2378, 2581, 2649, 3255 |
| FaqI | GGGAC | 6 cut(s) | 718, 839, 1226, 2193, 2194, 3048 |
| FauI | CCCGC | 5 cut(s) | 334, 708, 786, 1095, 2628 |
| FauNDI | CATATG | 1 cut(s) | 541 |
| FbaI | TGATCA | 1 cut(s) | 781 |
| FblI | GTMKAC | 1 cut(s) | 2710 |
| Fnu4HI | GCNGC | 5 cut(s) | 513, 834, 1644, 1659, 2055 |
| FriOI | GRGCYC | 2 cut(s) | 132, 2259 |
| Fsp4HI | GCNGC | 5 cut(s) | 513, 834, 1644, 1659, 2055 |
| FspBI | CTAG | 2 cut(s) | 938, 3009 |
| GlaI | GCGC | 5 cut(s) | 809, 3005, 3007, 3380, 3382 |
| GluI | GCNGC | 5 cut(s) | 513, 834, 1644, 1659, 2055 |
| GsaI | CCCAGC | 2 cut(s) | 1224, 3195 |
| GsuI | CTGGAG | 5 cut(s) | 357, 439, 1004, 1436, 2118 |
| HaeIII | GGCC | 7 cut(s) | 113, 659, 1196, 1592, 1838, 2648, 3098 |
| HapII | CCGG | 6 cut(s) | 185, 1406, 1548, 1593, 1991, 2479 |
| HhaI | GCGC | 5 cut(s) | 810, 3006, 3008, 3381, 3383 |
| Hin6I | GCGC | 5 cut(s) | 808, 3004, 3006, 3379, 3381 |
| HinP1I | GCGC | 5 cut(s) | 808, 3004, 3006, 3379, 3381 |
| HincII | GTYRAC | 2 cut(s) | 849, 2697 |
| HindII | GTYRAC | 2 cut(s) | 849, 2697 |
| HindIII | AAGCTT | 2 cut(s) | 392, 1254 |
| HpaI | GTTAAC | 1 cut(s) | 849 |
| HpaII | CCGG | 6 cut(s) | 185, 1406, 1548, 1593, 1991, 2479 |
| HphI | GGTGA | 9 cut(s) | 74, 535, 596, 700, 1259, 1394, 1553, 1805, 2702 |
| Hpy166II | GTNNAC | 7 cut(s) | 697, 849, 1623, 1796, 2697, 2711, 3181 |
| Hpy8I | GTNNAC | 7 cut(s) | 697, 849, 1623, 1796, 2697, 2711, 3181 |
| Hpy99I | CGWCG | 3 cut(s) | 578, 1059, 1638 |
| HpyAV | CCTTC | 6 cut(s) | 191, 649, 2261, 2638, 3088, 3368 |
| HpyCH4III | ACNGT | 9 cut(s) | 645, 1747, 1817, 2527, 2658, 2840, 2877, 3160, 3178 |
| HpyCH4IV | ACGT | 6 cut(s) | 101, 430, 731, 1054, 1606, 3104 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 805, 1036, 2036, 2672, 2870 |
| HpySE526I | ACGT | 6 cut(s) | 101, 430, 731, 1054, 1606, 3104 |
| HspAI | GCGC | 5 cut(s) | 808, 3004, 3006, 3379, 3381 |
| KpnI | GGTACC | 1 cut(s) | 2531 |
| Ksp22I | TGATCA | 1 cut(s) | 781 |
| KspAI | GTTAAC | 1 cut(s) | 849 |
| LguI | GCTCTTC | 1 cut(s) | 60 |
| LmnI | GCTCC | 8 cut(s) | 135, 261, 796, 1455, 1978, 2413, 3146, 3316 |
| Lsp1109I | GCAGC | 5 cut(s) | 499, 845, 1630, 1645, 2066 |
| LweI | GCATC | 8 cut(s) | 35, 85, 544, 1135, 1376, 1930, 2041, 2432 |
| MaeI | CTAG | 2 cut(s) | 938, 3009 |
| MaeII | ACGT | 6 cut(s) | 101, 430, 731, 1054, 1606, 3104 |
| MaeIII | GTNAC | 7 cut(s) | 1067, 1093, 1382, 2062, 2083, 2969, 3274 |
| MbiI | CCGCTC | 1 cut(s) | 793 |
| MfeI | CAATTG | 1 cut(s) | 2058 |
| MflI | RGATCY | 1 cut(s) | 1801 |
| MhlI | GDGCHC | 5 cut(s) | 132, 465, 1625, 2259, 2568 |
| MlsI | TGGCCA | 1 cut(s) | 1196 |
| MluNI | TGGCCA | 1 cut(s) | 1196 |
| MlyI | GAGTC | 5 cut(s) | 623, 767, 1430, 2402, 3030 |
| MmeI | TCCRAC | 1 cut(s) | 1422 |
| Mox20I | TGGCCA | 1 cut(s) | 1196 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 2 cut(s) | 644, 1852 |
| MscI | TGGCCA | 1 cut(s) | 1196 |
| MseI | TTAA | 9 cut(s) | 353, 720, 848, 932, 959, 1064, 1911, 2678, 2931 |
| MslI | CAYNNNNRTG | 2 cut(s) | 119, 2965 |
| Msp20I | TGGCCA | 1 cut(s) | 1196 |
| MspA1I | CMGCKG | 3 cut(s) | 329, 377, 2144 |
| MspI | CCGG | 6 cut(s) | 185, 1406, 1548, 1593, 1991, 2479 |
| MspR9I | CCNGG | 8 cut(s) | 619, 701, 1217, 1454, 1992, 2097, 2349, 2466 |
| MunI | CAATTG | 1 cut(s) | 2058 |
| MvaI | CCWGG | 7 cut(s) | 619, 701, 1217, 1454, 2097, 2349, 2466 |
| MvnI | CGCG | 3 cut(s) | 2291, 3006, 3381 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 805, 1036, 2036, 2672, 2870 |
| NciI | CCSGG | 1 cut(s) | 1992 |
| NdeI | CATATG | 1 cut(s) | 541 |
| NlaIV | GGNNCC | 4 cut(s) | 1214, 2463, 2529, 2619 |
| NmeAIII | GCCGAG | 1 cut(s) | 2218 |
| NmuCI | GTSAC | 3 cut(s) | 1093, 1382, 2083 |
| NruI | TCGCGA | 1 cut(s) | 2291 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 1034 |
| OliI | CACNNNNGTG | 2 cut(s) | 119, 2965 |
| PasI | CCCWGGG | 1 cut(s) | 2348 |
| PauI | GCGCGC | 2 cut(s) | 3004, 3379 |
| PceI | AGGCCT | 2 cut(s) | 659, 2648 |
| PciSI | GCTCTTC | 1 cut(s) | 60 |
| PdmI | GAANNNNTTC | 2 cut(s) | 644, 1852 |
| PfeI | GAWTC | 7 cut(s) | 401, 629, 1120, 1138, 1234, 1967, 3344 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2384, 3241 |
| PfoI | TCCNGGA | 3 cut(s) | 617, 1452, 2464 |
| PinAI | ACCGGT | 1 cut(s) | 1547 |
| PkrI | GCNGC | 5 cut(s) | 514, 835, 1645, 1660, 2056 |
| PleI | GAGTC | 5 cut(s) | 622, 766, 1429, 2401, 3030 |
| PpsI | GAGTC | 5 cut(s) | 622, 766, 1429, 2401, 3030 |
| Ppu21I | YACGTR | 1 cut(s) | 431 |
| PpuMI | RGGWCCY | 2 cut(s) | 1213, 2462 |
| PshAI | GACNNNNGTC | 1 cut(s) | 730 |
| PsiI | TTATAA | 1 cut(s) | 3089 |
| Psp124BI | GAGCTC | 1 cut(s) | 132 |
| Psp5II | RGGWCCY | 2 cut(s) | 1213, 2462 |
| Psp6I | CCWGG | 7 cut(s) | 617, 699, 1215, 1452, 2095, 2347, 2464 |
| PspEI | GGTNACC | 1 cut(s) | 1382 |
| PspFI | CCCAGC | 2 cut(s) | 1220, 3191 |
| PspGI | CCWGG | 7 cut(s) | 617, 699, 1215, 1452, 2095, 2347, 2464 |
| PspN4I | GGNNCC | 4 cut(s) | 1214, 2463, 2529, 2619 |
| PspPI | GGNCC | 6 cut(s) | 411, 1213, 1345, 1837, 2462, 2617 |
| PspPPI | RGGWCCY | 2 cut(s) | 1213, 2462 |
| PstI | CTGCAG | 1 cut(s) | 1293 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2039 |
| PsuI | RGATCY | 1 cut(s) | 1801 |
| PteI | GCGCGC | 2 cut(s) | 3004, 3379 |
| PvuII | CAGCTG | 1 cut(s) | 377 |
| RruI | TCGCGA | 1 cut(s) | 2291 |
| RsaI | GTAC | 6 cut(s) | 201, 341, 696, 1133, 2529, 2774 |
| RsaNI | GTAC | 6 cut(s) | 200, 340, 695, 1132, 2528, 2773 |
| RseI | CAYNNNNRTG | 2 cut(s) | 119, 2965 |
| SacI | GAGCTC | 1 cut(s) | 132 |
| SapI | GCTCTTC | 1 cut(s) | 60 |
| SaqAI | TTAA | 9 cut(s) | 353, 720, 848, 932, 959, 1064, 1911, 2678, 2931 |
| SatI | GCNGC | 5 cut(s) | 513, 834, 1644, 1659, 2055 |
| Sau96I | GGNCC | 6 cut(s) | 411, 1213, 1345, 1837, 2462, 2617 |
| SchI | GAGTC | 5 cut(s) | 623, 767, 1430, 2402, 3030 |
| ScrFI | CCNGG | 8 cut(s) | 619, 701, 1217, 1454, 1992, 2097, 2349, 2466 |
| SduI | GDGCHC | 5 cut(s) | 132, 465, 1625, 2259, 2568 |
| SfaNI | GCATC | 8 cut(s) | 35, 85, 544, 1135, 1376, 1930, 2041, 2432 |
| SfcI | CTRYAG | 3 cut(s) | 1207, 1289, 1813 |
| SinI | GGWCC | 5 cut(s) | 411, 1213, 1345, 2462, 2617 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 119, 2965 |
| SmlI | CTYRAG | 8 cut(s) | 71, 661, 1085, 1418, 1671, 1924, 2921, 3029 |
| SmoI | CTYRAG | 8 cut(s) | 71, 661, 1085, 1418, 1671, 1924, 2921, 3029 |
| SpeI | ACTAGT | 1 cut(s) | 937 |
| SseBI | AGGCCT | 2 cut(s) | 659, 2648 |
| SspI | AATATT | 4 cut(s) | 450, 956, 2154, 2832 |
| SspMI | CTAG | 2 cut(s) | 938, 3009 |
| SstI | GAGCTC | 1 cut(s) | 132 |
| StuI | AGGCCT | 2 cut(s) | 659, 2648 |
| StyD4I | CCNGG | 8 cut(s) | 617, 699, 1215, 1452, 1990, 2095, 2347, 2464 |
| StyI | CCWWGG | 5 cut(s) | 1789, 2378, 2581, 2649, 3255 |
| TaaI | ACNGT | 9 cut(s) | 645, 1747, 1817, 2527, 2658, 2840, 2877, 3160, 3178 |
| TaiI | ACGT | 6 cut(s) | 104, 433, 734, 1057, 1609, 3107 |
| TaqI | TCGA | 8 cut(s) | 126, 168, 1424, 1722, 1894, 1900, 2446, 3051 |
| TatI | WGTACW | 4 cut(s) | 339, 694, 1131, 2772 |
| TfiI | GAWTC | 7 cut(s) | 401, 629, 1120, 1138, 1234, 1967, 3344 |
| Tru1I | TTAA | 9 cut(s) | 353, 720, 848, 932, 959, 1064, 1911, 2678, 2931 |
| Tru9I | TTAA | 9 cut(s) | 353, 720, 848, 932, 959, 1064, 1911, 2678, 2931 |
| TscAI | CASTG | 8 cut(s) | 36, 255, 1048, 1293, 1822, 1960, 2076, 2896 |
| TseFI | GTSAC | 3 cut(s) | 1093, 1382, 2083 |
| TseI | GCWGC | 5 cut(s) | 512, 833, 1643, 1658, 2054 |
| Tsp45I | GTSAC | 3 cut(s) | 1093, 1382, 2083 |
| TspDTI | ATGAA | 9 cut(s) | 21, 756, 933, 1014, 1247, 1348, 2378, 2925, 3014 |
| TspGWI | ACGGA | 2 cut(s) | 2728, 3293 |
| TspRI | CASTG | 8 cut(s) | 36, 255, 1048, 1293, 1822, 1960, 2076, 2896 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2384, 3241 |
| VneI | GTGCAC | 1 cut(s) | 1621 |
| VpaK11BI | GGWCC | 5 cut(s) | 411, 1213, 1345, 2462, 2617 |
| XapI | RAATTY | 7 cut(s) | 204, 233, 434, 1784, 1986, 2247, 2881 |
| XceI | RCATGY | 1 cut(s) | 1034 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 473, 1394 |
| XmiI | GTMKAC | 1 cut(s) | 2710 |
| XmnI | GAANNNNTTC | 2 cut(s) | 644, 1852 |
| XspI | CTAG | 2 cut(s) | 938, 3009 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |