Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003570.1

Orthogroup ID

OG0000463

Physical Location & Seq

Genomic Coordinates Forward (+)

11100 .. 11772

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003570.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgtcatcatctttgtcttctctgaaagttggttcgaagcctagcaagtcagattatcccgataagaaaaggcaccggagtgaggcttggagtcaagaagacgatgaaggaattgttcctctacaacagaaagatcaagttgttattatttatggtccaactgggtgtggaaaaactacacagataccccaatatctacacgaggccggatatagcaaaaaagggaagattgggtgcacacagccacatggagttgttgctatgagtgctgcttccagagtttctaaacaggtgggtgtcaagctcgggaatgaggtaggatattccattccttctgaggattgcacatctgaaaagactgttttgaaatatatgacagatgaaatgttgttgcatgaactctatggtgaaccagatttgataagctatagtgtgttggtggtggatggagccgatgagagaacactcttaactgatatcctactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

162

Amino Acids

17.69

Weight (kDa)

5.56

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca	FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica	MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica	Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis	pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis	RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata	RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora	Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa	Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha	Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana	Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	367
AleI	CACNNNNGTG	1 cut(s)	78
AluBI	AGCT	2 cut(s)	304, 426
AluI	AGCT	2 cut(s)	304, 426
Alw21I	GWGCWC	1 cut(s)	239
Alw44I	GTGCAC	1 cut(s)	235
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	204
ApaLI	GTGCAC	1 cut(s)	235
ApeKI	GCWGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	419
AsuII	TTCGAA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	72
BauI	CACGAG	1 cut(s)	200
BbsI	GAAGAC	2 cut(s)	9, 105
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	1 cut(s)	440
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	427
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	155
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	2 cut(s)	74, 451
BmrI	ACTGGG	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	171
BpiI	GAAGAC	2 cut(s)	9, 105
Bpu14I	TTCGAA	1 cut(s)	35
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	166
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	256
BshFI	GGCC	1 cut(s)	206
BshNI	GGYRCC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	2 cut(s)	76, 207
BslI	CCNNNNNNNGG	1 cut(s)	82
BsnI	GGCC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	305
Bsp119I	TTCGAA	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	133
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	74, 451
BspT104I	TTCGAA	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	133
BssSI	CACGAG	1 cut(s)	200
Bst2BI	CACGAG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	361
BstBI	TTCGAA	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	427
BstSLI	GKGCMC	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	2 cut(s)	9, 105
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	155
CviAII	CATG	2 cut(s)	248, 395
CviJI	RGCY	7 cut(s)	40, 86, 206, 244, 304, 426, 452
CviKI_1	RGCY	7 cut(s)	40, 86, 206, 244, 304, 426, 452
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	305
EcoRV	GATATC	1 cut(s)	478
FaeI	CATG	2 cut(s)	251, 398
FaiI	YATR	9 cut(s)	153, 213, 249, 263, 372, 374, 396, 405, 429
FatI	CATG	2 cut(s)	247, 394
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	2 cut(s)	76, 207
Hin1II	CATG	2 cut(s)	251, 398
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	76, 207
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	2 cut(s)	237, 410
Hpy188I	TCNGA	4 cut(s)	24, 52, 337, 352
Hpy188III	TCNNGA	4 cut(s)	59, 95, 276, 307
Hpy8I	GTNNAC	2 cut(s)	237, 410
HpyAV	CCTTC	2 cut(s)	101, 342
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	3 cut(s)	237, 345, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	251, 398
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	449
LpnPI	CCDG	6 cut(s)	89, 147, 220, 275, 289, 426
Lsp1109I	GCAGC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	42
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	3 cut(s)	9, 110, 238
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	5 cut(s)	76, 129, 196, 307, 331
MseI	TTAA	1 cut(s)	470
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	2 cut(s)	76, 207
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	251, 398
NlaIV	GGNNCC	2 cut(s)	74, 451
NspV	TTCGAA	1 cut(s)	35
OliI	CACNNNNGTG	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	74, 451
PspPI	GGNCC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	78
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	4 cut(s)	294, 306, 318, 428
SfcI	CTRYAG	1 cut(s)	427
SfuI	TTCGAA	1 cut(s)	35
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	1 cut(s)	111
SspMI	CTAG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	35
TasI	AATT	1 cut(s)	111
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	3 cut(s)	120, 396, 411
VneI	GTGCAC	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	155
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.