Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000463

Physical Location & Seq

Genomic Coordinates Reverse (-)

3918690 .. 3927501

Gene Structure 8812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG054000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3138 bp

ATGGGGAGCGAGAGCAATTTGAAGACGTGGGTTTCCGATAAGCTGATGACATTGCTCGGTTATTCTCAGCCGGCTGTTGTTCAGTACATTGTTGGATTGACTAAACAAGCAAAGTCTCCGGCTGATGTGGTGGAGAAGCTTTTAGATTCGGGGTGGTCCTCCTCGTCTGATACACGTGAATTTGCTGAAGAAATATTCTCCAGAGTGCCCCACAAATCATCCGGACCGAATGTTTATCAGAAACAAGAGAGGGAGGCTGCAATGCTGGTGAGAAAGCAGAAGACATATGCTCTATTGGATGCAGATGATGATGATGAAGACGACGATGGTGGTGATAAGTCTTCTGTTCCAGTAGTTTCTGAGTCCAGGAAAAGTGATTCCCATAAGAAACGGTTCAGGAGGAAGGCCTCAAGTCAAGACGATGAAGATGATGAGGTGATTGTACACCAGGAAGAAGTGAGGCGGGTCAAAAGACGAACTTCCCCAGATGAAGATGATGGTTCAGAGTCCGAAGAAGAAAGATTGCGTGATCAAAGAGAGCGGGAGCAATTAGAGCGCAATATAAGGGAGAGGGACACAGCAGCTACACGAAAGTTAACAGAGAGAAAGTTATCAAAAAAAGAGGAAGAGGAGGCTATTCGGAGAAACAAGGCTTCAGAGCGAAATGAAACTGAAGATTTAAGACTAGTTTCAAGACAAGAATATTTAAAGAAAAGACAGCAGAAGAAACTGGAGGAAATCAGAGATGAAATAGAAGATGAGCAATACTTATTTGAGCACGTGAAGCTCACTGAATTGGAACGTCGTGAATTAAGTTACAAGAAGCAAATACTTGAGGCTGTAACGAAGCGGGCAGTTGAGGACGAGAATCAAAATGAGTACAGGATTCCTGATGCCTATGATGTGGAGGGGGGTGTCAATCAGGAGAAGAGATTTTCTGTGGCCATGCAACGCTACAGGGACCTGGCTGGGGATAAAATGAATCCATTTGCAGAACAGGAAGCTTGGGAGGATCACCAAATTGGAAAGGCAACACTGCAGTATGGTTCAAAAAATAAAAAGCGATCTGATGAGTATCAATATGTATTTGAGGACCAGATTGATTTCATCAAGGCATCAGTAATGGATGGTGACCAGTTTGAGGATGGGCAACCGGCGGATTTACTTGAGTCGAGAGCGAAATCAGAGTTGGAGAAGCTCCAGGAGGACAGAAAAACATTACCCATATACTCCTATCGTGATGAGTTGCTCAAAGCTGTTGATAACCATCAGGTTCTTGTTATTGTTGGTGAAACCGGTTCTGGGAAAACTACGCAAATACCCCAGTATCTTCACGAGGCCGGATACACGAAACGTGGAAAGATTGGGTGCACACAGCCACGACGAGTTGCTGCTATGAGTGTTGCTGCAAGGGTTTCTCAAGAAATGGGTGTGAAACTTGGGCATGAGGTAGGTTATTCCATTCGTTTCGAGGATTGCACATCGGAAAAGACGGTTTTGAAATATATGACAGATGGGATGTTGTTGCGAGAATTCCTTGGTGAACCAGATCTGGCAGGCTACAGTGTGGTTATGGTGGATGAGGCCCATGAGAGAACACTTTCAACTGATATTCTATTTGGATTAGTAAAGGATATTGCTCGATTTCGACCTGATCTTAAACTACTTATCTCAAGTGCAACACTTGATGCTGAGAAGTTCAGTGATTATTTTGATTCTGCTCCAATTTTCAAAATTCCGGGGAGGCGTTATCCTGTTGAAATAAATTACACAAAAGCACCAGAAGCTGATTACTTGGATGCAGCAATTGTTACTGCACTGCAAATCCATGTGACAGAAGCACCTGGAGATATATTAGTGTTCCTGACAGGTCAAGAAGAAATTGAAACAGCGGAAGAAATATTGAAGCACAGAACAAGGGGCTTAGGGACAAAAATTGCCGAGCTTATTATTTGTCCCATATATGCAAACCTACCTACTGAGCTACAATCCAAAATTTTTGAGCCCACACCTGAAGGGGCAAGGAAAGTTGTCCTCGCGACAAATATAGCTGAAACTTCACTAACTATTGATGGGATCAAATATGTTATTGACCCAGGGTTTTGCAAGATGAAGTCATATAATCCAAGGACTGGGATGGAGTCGTTGCTGGTCGCTCCCATCTCAAAGGCATCAGCCAATCAGAGGGCAGGTCGATCTGGGAGAACGGGTCCTGGAAAGTGCTACCGGCTATATACTATGTTCAATTACCAAACTGAGTTAGAAGATAACACGGTACCAGAAATACAGAGGACTAACCTTGCAAATGTTGTGCTCATGCTGAAAAGCCTTGGTATCCATGACCTGTTACATTTTGATTTTATGGACCCGCCACCATCAGAGGCATTACTGAAAGCCTTGGAACTGTTATTTGCACTAAGTGCATTAAATAAAGTGGGTGAGTTGACTAAAGTTGGTAGACGGATGGCTGAGTTTCCTCTTGACCCTATGCTATCTAAGATGATAGTTGCTTCTGATAAGTACAAGTGTTCAGACGAGATCATTTCCATTGCTTCCATGCTTTCCATTGGTAATTCAATATTTTACCGTCCAAAGGACAAACAAGTCCATGCTGACAATGCACGGTTGAATTTTCACACTGGGAATGTGGGAGATCACATCGCATTGCTCAAGGTTTTTAATTCATGGAAAGAGACCAATTTCTCAACACAATGGTGTTACGAGAATTATATACAGGTCAGGAGTATGAAGCGCGCTAGAGATATTAGAGACCAGCTCGAGGGACTCTTGGAGAGGGTCGAGATTGAGCAGGTCTCAAATCTTGATTTTGAAGTTATAAAGAAGGCCATTACATCTGGCTTTTTCCCTCATTCCGCAAGACTGCAAAAGAGTGGAGCTTATAGAACGGTCAAACATCCGCAGACTGTCCACATACACCCCAGCTCAGGGCTTTCTCAGGTGCTTCCAAGATGGGTTATATACCATGAGTTGGTGCTTACAACCAAGGAATATATGAGACAGGTAACGGAACTGAAGCCAGAGTGGTTGGTGGAAATAGCTCCGCATTATTACCAGCTAAAGGATGTTGAAGATTCGGTGTCAAAGAAAATGCCTCGTGGAGAAGGGCGTGCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

1045

Amino Acids

119.45

Weight (kDa)

5.68

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	611 - 737	1.1e-11	Helicase conserved C-terminal domain
WHD_HA2	PF04408	799 - 827	1e-09	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	828 - 889	4.8e-11	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	946 - 1023	7.1e-24	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca	FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica	MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica	Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis	pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis	RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata	RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora	Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa	Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha	Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana	Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2837
AasI	GACNNNNNNGTC	1 cut(s)	2603
Acc36I	ACCTGC	2 cut(s)	2180, 2800
Acc65I	GGTACC	1 cut(s)	2275
AccB1I	GGYRCC	1 cut(s)	2275
AccB7I	CCANNNNNTGG	2 cut(s)	2132, 2989
AccBSI	CCGCTC	1 cut(s)	541
AccI	GTMKAC	1 cut(s)	2458
AccII	CGCG	2 cut(s)	2039, 2754
AccIII	TCCGGA	1 cut(s)	221
AciI	CCGC	9 cut(s)	463, 541, 850, 1157, 1892, 2369, 2874, 2918, 3062
AclWI	GGATC	2 cut(s)	1020, 2084
AcoI	YGGCCR	1 cut(s)	942
AcsI	RAATTY	5 cut(s)	179, 1532, 1734, 1995, 2629
AcuI	CTGAAG	5 cut(s)	207, 639, 693, 2034, 3053
AcvI	CACGTG	2 cut(s)	176, 781
AdeI	CACNNNGTG	1 cut(s)	2420
AfaI	GTAC	5 cut(s)	86, 444, 881, 2277, 2522
AflIII	ACRYGT	1 cut(s)	173
AgeI	ACCGGT	1 cut(s)	1295
AhlI	ACTAGT	1 cut(s)	685
AjiI	CACGTC	1 cut(s)	27
AjnI	CCWGG	7 cut(s)	365, 447, 963, 1200, 1843, 2095, 2212
AjuI	GAANNNNNNNTTGG	2 cut(s)	1172, 1204
AleI	CACNNNNGTG	1 cut(s)	2713
Alw21I	GWGCWC	3 cut(s)	780, 1373, 2316
Alw26I	GTCTC	5 cut(s)	120, 2687, 2763, 2818, 3010
Alw44I	GTGCAC	1 cut(s)	1369
AlwI	GGATC	2 cut(s)	1020, 2084
AlwNI	CAGNNNCTG	1 cut(s)	1787
Ama87I	CYCGRG	1 cut(s)	2777
Aor13HI	TCCGGA	1 cut(s)	221
AoxI	GGCC	5 cut(s)	405, 942, 1338, 1584, 2844
ApaLI	GTGCAC	1 cut(s)	1369
ApeKI	GCWGC	5 cut(s)	257, 581, 1391, 1406, 1802
ApoI	RAATTY	5 cut(s)	179, 1532, 1734, 1995, 2629
AsiGI	ACCGGT	1 cut(s)	1295
Asp700I	GAANNNNTTC	2 cut(s)	392, 1600
Asp718I	GGTACC	1 cut(s)	2275
AspLEI	GCGC	3 cut(s)	558, 2754, 2756
AspS9I	GGNCC	7 cut(s)	156, 224, 961, 1093, 1585, 2210, 2365
AsuC2I	CCSGG	1 cut(s)	1740
AsuHPI	GGTGA	8 cut(s)	280, 344, 448, 1007, 1142, 1301, 1553, 2450
AvaI	CYCGRG	1 cut(s)	2777
AvaII	GGWCC	6 cut(s)	156, 224, 961, 1093, 2210, 2365
BaeGI	GKGCMC	2 cut(s)	210, 1373
BaeI	ACNNNNGTAYC	2 cut(s)	1310, 1343
BalI	TGGCCA	1 cut(s)	944
BanI	GGYRCC	1 cut(s)	2275
BanII	GRGCYC	1 cut(s)	2007
BauI	CACGAG	2 cut(s)	1334, 3114
BbrPI	CACGTG	2 cut(s)	176, 781
BbsI	GAAGAC	4 cut(s)	29, 287, 324, 333
Bbv12I	GWGCWC	3 cut(s)	780, 1373, 2316
BbvI	GCAGC	5 cut(s)	244, 593, 1378, 1393, 1814
BciT130I	CCWGG	7 cut(s)	367, 449, 965, 1202, 1845, 2097, 2214
BciVI	GTATCC	2 cut(s)	1337, 2345
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	1 cut(s)	1740
BcoDI	GTCTC	5 cut(s)	120, 2687, 2763, 2818, 3010
BcuI	ACTAGT	1 cut(s)	685
BfaI	CTAG	2 cut(s)	686, 2757
BfmI	CTRYAG	3 cut(s)	955, 1037, 1561
BfuAI	ACCTGC	2 cut(s)	2180, 2800
BfuI	GTATCC	2 cut(s)	1337, 2345
BglII	AGATCT	1 cut(s)	1549
BisI	GCNGC	5 cut(s)	258, 582, 1392, 1407, 1803
BlsI	GCNGC	5 cut(s)	259, 583, 1393, 1408, 1804
Bme1390I	CCNGG	8 cut(s)	367, 449, 965, 1202, 1740, 1845, 2097, 2214
Bme18I	GGWCC	6 cut(s)	156, 224, 961, 1093, 2210, 2365
BmeT110I	CYCGRG	1 cut(s)	2777
BmgBI	CACGTC	1 cut(s)	27
BmgT120I	GGNCC	7 cut(s)	156, 224, 961, 1093, 1585, 2210, 2365
BmiI	GGNNCC	4 cut(s)	962, 2211, 2277, 2367
BmrFI	CCNGG	8 cut(s)	367, 449, 965, 1202, 1740, 1845, 2097, 2214
BmrI	ACTGGG	3 cut(s)	1318, 2142, 2649
BmsI	GCATC	6 cut(s)	289, 883, 1124, 1678, 1789, 2180
BmuI	ACTGGG	3 cut(s)	1318, 2142, 2649
BpiI	GAAGAC	4 cut(s)	29, 287, 324, 333
BplI	GAGNNNNNCTC	4 cut(s)	2760, 2792, 2798, 2830
BpmI	CTGGAG	4 cut(s)	184, 752, 1184, 1866
Bpu10I	CCTNAGC	2 cut(s)	1924, 2944
BpuEI	CTTGAG	6 cut(s)	394, 854, 1187, 1404, 1657, 2654
BpuMI	CCSGG	1 cut(s)	1740
BsaAI	YACGTR	2 cut(s)	176, 781
BsaBI	GATNNNNATC	2 cut(s)	1074, 1266
BsaI	GGTCTC	3 cut(s)	2687, 2763, 2818
BsaJI	CCNNGG	8 cut(s)	1537, 1739, 2095, 2096, 2126, 2329, 2397, 3003
BsaWI	WCCGGW	2 cut(s)	221, 1295
BsaXI	ACNNNNNCTCC	2 cut(s)	2194, 2224
Bse118I	RCCGGY	4 cut(s)	70, 1153, 1295, 2226
Bse1I	ACTGG	6 cut(s)	350, 735, 1135, 1324, 2137, 2644
Bse3DI	GCAATG	4 cut(s)	50, 267, 2547, 2663
Bse8I	GATNNNNATC	2 cut(s)	1074, 1266
BseAI	TCCGGA	1 cut(s)	221
BseBI	CCWGG	7 cut(s)	367, 449, 965, 1202, 1845, 2097, 2214
BseDI	CCNNGG	8 cut(s)	1537, 1739, 2095, 2096, 2126, 2329, 2397, 3003
BseJI	GATNNNNATC	2 cut(s)	1074, 1266
BseMI	GCAATG	4 cut(s)	50, 267, 2547, 2663
BseMII	CTCAG	8 cut(s)	80, 351, 1683, 1971, 2247, 2460, 2958, 2969
BseNI	ACTGG	6 cut(s)	350, 735, 1135, 1324, 2137, 2644
BsePI	GCGCGC	1 cut(s)	2752
BseRI	GAGGAG	2 cut(s)	151, 644
BseSI	GKGCMC	2 cut(s)	210, 1373
BseXI	GCAGC	5 cut(s)	244, 593, 1378, 1393, 1814
BseYI	CCCAGC	2 cut(s)	968, 2939
BsgI	GTGCAG	1 cut(s)	1800
Bsh1236I	CGCG	2 cut(s)	2039, 2754
BshFI	GGCC	5 cut(s)	407, 944, 1340, 1586, 2846
BshNI	GGYRCC	1 cut(s)	2275
BshTI	ACCGGT	1 cut(s)	1295
BsiHKAI	GWGCWC	3 cut(s)	780, 1373, 2316
BsiHKCI	CYCGRG	1 cut(s)	2777
BsiSI	CCGG	8 cut(s)	71, 119, 222, 1154, 1296, 1341, 1739, 2227
BslFI	GGGAC	5 cut(s)	587, 974, 1941, 1942, 2796
BsmAI	GTCTC	5 cut(s)	120, 2687, 2763, 2818, 3010
BsmFI	GGGAC	5 cut(s)	587, 974, 1941, 1942, 2796
BsnI	GGCC	5 cut(s)	407, 944, 1340, 1586, 2846
Bso31I	GGTCTC	3 cut(s)	2687, 2763, 2818
BsoBI	CYCGRG	1 cut(s)	2777
Bsp1286I	GDGCHC	5 cut(s)	210, 780, 1373, 2007, 2316
Bsp13I	TCCGGA	1 cut(s)	221
Bsp1407I	TGTACA	1 cut(s)	442
Bsp143I	GATC	9 cut(s)	529, 1012, 1064, 1549, 1654, 2076, 2195, 2538, 2653
Bsp68I	TCGCGA	1 cut(s)	2039
BspACI	CCGC	9 cut(s)	463, 541, 850, 1157, 1892, 2369, 2874, 2918, 3062
BspANI	GGCC	5 cut(s)	407, 944, 1340, 1586, 2846
BspCNI	CTCAG	8 cut(s)	79, 352, 1684, 1972, 2248, 2461, 2957, 2968
BspEI	TCCGGA	1 cut(s)	221
BspFNI	CGCG	2 cut(s)	2039, 2754
BspLI	GGNNCC	4 cut(s)	962, 2211, 2277, 2367
BspMAI	CTGCAG	1 cut(s)	1041
BspMI	ACCTGC	2 cut(s)	2180, 2800
BspPI	GGATC	2 cut(s)	1020, 2084
BspT107I	GGYRCC	1 cut(s)	2275
BspTNI	GGTCTC	3 cut(s)	2687, 2763, 2818
BsrBI	CCGCTC	1 cut(s)	541
BsrDI	GCAATG	4 cut(s)	50, 267, 2547, 2663
BsrFI	RCCGGY	4 cut(s)	70, 1153, 1295, 2226
BsrGI	TGTACA	1 cut(s)	442
BsrI	ACTGG	6 cut(s)	350, 735, 1135, 1324, 2137, 2644
BssAI	RCCGGY	4 cut(s)	70, 1153, 1295, 2226
BssECI	CCNNGG	8 cut(s)	1537, 1739, 2095, 2096, 2126, 2329, 2397, 3003
BssHII	GCGCGC	1 cut(s)	2752
BssMI	GATC	9 cut(s)	529, 1012, 1064, 1549, 1654, 2076, 2195, 2538, 2653
BssSI	CACGAG	2 cut(s)	1334, 3114
BssT1I	CCWWGG	5 cut(s)	1537, 2126, 2329, 2397, 3003
Bst2BI	CACGAG	2 cut(s)	1334, 3114
Bst2UI	CCWGG	7 cut(s)	367, 449, 965, 1202, 1845, 2097, 2214
Bst4CI	ACNGT	9 cut(s)	393, 1495, 1565, 2275, 2406, 2588, 2625, 2908, 2926
Bst6I	CTCTTC	2 cut(s)	621, 923
BstAPI	GCANNNNNTGC	1 cut(s)	2420
BstAUI	TGTACA	1 cut(s)	442
BstBAI	YACGTR	2 cut(s)	176, 781
BstC8I	GCNNGC	5 cut(s)	72, 852, 1558, 2754, 3129
BstEII	GGTNACC	1 cut(s)	1130
BstFNI	CGCG	2 cut(s)	2039, 2754
BstHHI	GCGC	3 cut(s)	558, 2754, 2756
BstKTI	GATC	9 cut(s)	532, 1015, 1067, 1552, 1657, 2079, 2198, 2541, 2656
BstMAI	GTCTC	5 cut(s)	120, 2687, 2763, 2818, 3010
BstMBI	GATC	9 cut(s)	529, 1012, 1064, 1549, 1654, 2076, 2195, 2538, 2653
BstMWI	GCNNNNNNNGC	5 cut(s)	553, 784, 1784, 2420, 2618
BstNI	CCWGG	7 cut(s)	367, 449, 965, 1202, 1845, 2097, 2214
BstPI	GGTNACC	1 cut(s)	1130
BstSCI	CCNGG	8 cut(s)	365, 447, 963, 1200, 1738, 1843, 2095, 2212
BstSFI	CTRYAG	3 cut(s)	955, 1037, 1561
BstSLI	GKGCMC	2 cut(s)	210, 1373
BstUI	CGCG	2 cut(s)	2039, 2754
BstV1I	GCAGC	5 cut(s)	244, 593, 1378, 1393, 1814
BstV2I	GAAGAC	4 cut(s)	29, 287, 324, 333
BstX2I	RGATCY	1 cut(s)	1549
BstYI	RGATCY	1 cut(s)	1549
BsuI	GTATCC	2 cut(s)	1337, 2345
BsuRI	GGCC	5 cut(s)	407, 944, 1340, 1586, 2846
BtgZI	GCGATG	1 cut(s)	2644
BtrI	CACGTC	1 cut(s)	27
BtsI	GCAGTG	2 cut(s)	1034, 1817
BtsIMutI	CAGTG	6 cut(s)	789, 1034, 1570, 1708, 1817, 2637
BtuMI	TCGCGA	1 cut(s)	2039
BveI	ACCTGC	2 cut(s)	2180, 2800
Cac8I	GCNNGC	5 cut(s)	72, 852, 1558, 2754, 3129
CaiI	CAGNNNCTG	1 cut(s)	1787
CfoI	GCGC	3 cut(s)	558, 2754, 2756
Cfr10I	RCCGGY	4 cut(s)	70, 1153, 1295, 2226
Cfr13I	GGNCC	7 cut(s)	156, 224, 961, 1093, 1585, 2210, 2365
CpoI	CGGWCCG	1 cut(s)	224
Csp6I	GTAC	5 cut(s)	85, 443, 880, 2276, 2521
CspAI	ACCGGT	1 cut(s)	1295
CspI	CGGWCCG	1 cut(s)	224
CviQI	GTAC	5 cut(s)	85, 443, 880, 2276, 2521
DpnI	GATC	9 cut(s)	531, 1014, 1066, 1551, 1656, 2078, 2197, 2540, 2655
DpnII	GATC	9 cut(s)	529, 1012, 1064, 1549, 1654, 2076, 2195, 2538, 2653
DraI	TTTAAA	1 cut(s)	708
DraIII	CACNNNGTG	1 cut(s)	2420
DrdI	GACNNNNNNGTC	1 cut(s)	2603
DseDI	GACNNNNNNGTC	1 cut(s)	2603
EaeI	YGGCCR	1 cut(s)	942
Eam1104I	CTCTTC	2 cut(s)	621, 923
EarI	CTCTTC	2 cut(s)	621, 923
EciI	GGCGGA	1 cut(s)	1172
Eco130I	CCWWGG	5 cut(s)	1537, 2126, 2329, 2397, 3003
Eco147I	AGGCCT	1 cut(s)	407
Eco24I	GRGCYC	1 cut(s)	2007
Eco31I	GGTCTC	3 cut(s)	2687, 2763, 2818
Eco47I	GGWCC	6 cut(s)	156, 224, 961, 1093, 2210, 2365
Eco57I	CTGAAG	5 cut(s)	207, 639, 693, 2034, 3053
Eco72I	CACGTG	2 cut(s)	176, 781
Eco88I	CYCGRG	1 cut(s)	2777
Eco91I	GGTNACC	1 cut(s)	1130
EcoO109I	RGGNCCY	2 cut(s)	961, 2210
EcoO65I	GGTNACC	1 cut(s)	1130
EcoRI	GAATTC	1 cut(s)	1532
EcoRII	CCWGG	7 cut(s)	365, 447, 963, 1200, 1843, 2095, 2212
EcoT14I	CCWWGG	5 cut(s)	1537, 2126, 2329, 2397, 3003
EcoT38I	GRGCYC	1 cut(s)	2007
ErhI	CCWWGG	5 cut(s)	1537, 2126, 2329, 2397, 3003
FalI	AAGNNNNNCTT	2 cut(s)	463, 495
FaqI	GGGAC	5 cut(s)	587, 974, 1941, 1942, 2796
FauI	CCCGC	4 cut(s)	456, 534, 843, 2376
FauNDI	CATATG	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	2458
Fnu4HI	GCNGC	5 cut(s)	258, 582, 1392, 1407, 1803
FriOI	GRGCYC	1 cut(s)	2007
Fsp4HI	GCNGC	5 cut(s)	258, 582, 1392, 1407, 1803
FspBI	CTAG	2 cut(s)	686, 2757
GlaI	GCGC	3 cut(s)	557, 2753, 2755
GluI	GCNGC	5 cut(s)	258, 582, 1392, 1407, 1803
GsaI	CCCAGC	2 cut(s)	972, 2943
GsuI	CTGGAG	4 cut(s)	184, 752, 1184, 1866
HaeIII	GGCC	5 cut(s)	407, 944, 1340, 1586, 2846
HapII	CCGG	8 cut(s)	71, 119, 222, 1154, 1296, 1341, 1739, 2227
HhaI	GCGC	3 cut(s)	558, 2754, 2756
Hin6I	GCGC	3 cut(s)	556, 2752, 2754
HinP1I	GCGC	3 cut(s)	556, 2752, 2754
HincII	GTYRAC	2 cut(s)	597, 2445
HindII	GTYRAC	2 cut(s)	597, 2445
HindIII	AAGCTT	2 cut(s)	137, 1002
HpaI	GTTAAC	1 cut(s)	597
HpaII	CCGG	8 cut(s)	71, 119, 222, 1154, 1296, 1341, 1739, 2227
HphI	GGTGA	8 cut(s)	280, 344, 448, 1007, 1142, 1301, 1553, 2450
Hpy166II	GTNNAC	7 cut(s)	445, 597, 1371, 1544, 2445, 2459, 2929
Hpy8I	GTNNAC	7 cut(s)	445, 597, 1371, 1544, 2445, 2459, 2929
Hpy99I	CGWCG	3 cut(s)	326, 807, 1386
HpyAV	CCTTC	4 cut(s)	397, 2009, 2836, 3116
HpyCH4III	ACNGT	9 cut(s)	393, 1495, 1565, 2275, 2406, 2588, 2625, 2908, 2926
HpyCH4IV	ACGT	5 cut(s)	26, 175, 780, 802, 1354
HpyF10VI	GCNNNNNNNGC	5 cut(s)	553, 784, 1784, 2420, 2618
HpySE526I	ACGT	5 cut(s)	26, 175, 780, 802, 1354
HspAI	GCGC	3 cut(s)	556, 2752, 2754
Kpn2I	TCCGGA	1 cut(s)	221
KpnI	GGTACC	1 cut(s)	2279
KroI	GCCGGC	1 cut(s)	70
KroNI	GCCGGC	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	529
KspAI	GTTAAC	1 cut(s)	597
Kzo9I	GATC	9 cut(s)	529, 1012, 1064, 1549, 1654, 2076, 2195, 2538, 2653
LmnI	GCTCC	7 cut(s)	6, 544, 1203, 1726, 2161, 2894, 3064
Lsp1109I	GCAGC	5 cut(s)	244, 593, 1378, 1393, 1814
LweI	GCATC	6 cut(s)	289, 883, 1124, 1678, 1789, 2180
MaeI	CTAG	2 cut(s)	686, 2757
MaeII	ACGT	5 cut(s)	26, 175, 780, 802, 1354
MaeIII	GTNAC	8 cut(s)	815, 841, 1130, 1810, 1831, 2346, 2717, 3022
MalI	GATC	9 cut(s)	531, 1014, 1066, 1551, 1656, 2078, 2197, 2540, 2655
MbiI	CCGCTC	1 cut(s)	541
MboI	GATC	9 cut(s)	529, 1012, 1064, 1549, 1654, 2076, 2195, 2538, 2653
MfeI	CAATTG	1 cut(s)	1806
MflI	RGATCY	1 cut(s)	1549
MhlI	GDGCHC	5 cut(s)	210, 780, 1373, 2007, 2316
MlsI	TGGCCA	1 cut(s)	944
MluNI	TGGCCA	1 cut(s)	944
MlyI	GAGTC	5 cut(s)	371, 515, 1178, 2150, 2778
MmeI	TCCRAC	2 cut(s)	73, 1170
Mox20I	TGGCCA	1 cut(s)	944
MroI	TCCGGA	1 cut(s)	221
MroNI	GCCGGC	1 cut(s)	70
MroXI	GAANNNNTTC	2 cut(s)	392, 1600
MscI	TGGCCA	1 cut(s)	944
MseI	TTAA	7 cut(s)	596, 680, 707, 812, 1659, 2426, 2679
MslI	CAYNNNNRTG	1 cut(s)	2713
Msp20I	TGGCCA	1 cut(s)	944
MspA1I	CMGCKG	1 cut(s)	1892
MspI	CCGG	8 cut(s)	71, 119, 222, 1154, 1296, 1341, 1739, 2227
MspR9I	CCNGG	8 cut(s)	367, 449, 965, 1202, 1740, 1845, 2097, 2214
MunI	CAATTG	1 cut(s)	1806
MvaI	CCWGG	7 cut(s)	367, 449, 965, 1202, 1845, 2097, 2214
MvnI	CGCG	2 cut(s)	2039, 2754
MwoI	GCNNNNNNNGC	5 cut(s)	553, 784, 1784, 2420, 2618
NaeI	GCCGGC	1 cut(s)	72
NciI	CCSGG	1 cut(s)	1740
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	9 cut(s)	529, 1012, 1064, 1549, 1654, 2076, 2195, 2538, 2653
NgoMIV	GCCGGC	1 cut(s)	70
NlaIV	GGNNCC	4 cut(s)	962, 2211, 2277, 2367
NmeAIII	GCCGAG	1 cut(s)	1966
NmuCI	GTSAC	2 cut(s)	1130, 1831
NruI	TCGCGA	1 cut(s)	2039
OliI	CACNNNNGTG	1 cut(s)	2713
PaeR7I	CTCGAG	1 cut(s)	2777
PasI	CCCWGGG	1 cut(s)	2096
PauI	GCGCGC	1 cut(s)	2752
PceI	AGGCCT	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	72
PdmI	GAANNNNTTC	2 cut(s)	392, 1600
PfeI	GAWTC	7 cut(s)	146, 377, 868, 886, 982, 1715, 3092
PflMI	CCANNNNNTGG	2 cut(s)	2132, 2989
PfoI	TCCNGGA	3 cut(s)	365, 1200, 2212
PinAI	ACCGGT	1 cut(s)	1295
PkrI	GCNGC	5 cut(s)	259, 583, 1393, 1408, 1804
PleI	GAGTC	5 cut(s)	370, 514, 1177, 2149, 2778
PmaCI	CACGTG	2 cut(s)	176, 781
PmlI	CACGTG	2 cut(s)	176, 781
PpsI	GAGTC	5 cut(s)	370, 514, 1177, 2149, 2778
Ppu21I	YACGTR	2 cut(s)	176, 781
PpuMI	RGGWCCY	2 cut(s)	961, 2210
PsiI	TTATAA	1 cut(s)	2837
Psp5II	RGGWCCY	2 cut(s)	961, 2210
Psp6I	CCWGG	7 cut(s)	365, 447, 963, 1200, 1843, 2095, 2212
PspCI	CACGTG	2 cut(s)	176, 781
PspEI	GGTNACC	1 cut(s)	1130
PspFI	CCCAGC	2 cut(s)	968, 2939
PspGI	CCWGG	7 cut(s)	365, 447, 963, 1200, 1843, 2095, 2212
PspN4I	GGNNCC	4 cut(s)	962, 2211, 2277, 2367
PspPI	GGNCC	7 cut(s)	156, 224, 961, 1093, 1585, 2210, 2365
PspPPI	RGGWCCY	2 cut(s)	961, 2210
PspXI	VCTCGAGB	1 cut(s)	2777
PstI	CTGCAG	1 cut(s)	1041
PstNI	CAGNNNCTG	1 cut(s)	1787
PsuI	RGATCY	1 cut(s)	1549
PteI	GCGCGC	1 cut(s)	2752
RruI	TCGCGA	1 cut(s)	2039
RsaI	GTAC	5 cut(s)	86, 444, 881, 2277, 2522
RsaNI	GTAC	5 cut(s)	85, 443, 880, 2276, 2521
RseI	CAYNNNNRTG	1 cut(s)	2713
Rsr2I	CGGWCCG	1 cut(s)	224
RsrII	CGGWCCG	1 cut(s)	224
SaqAI	TTAA	7 cut(s)	596, 680, 707, 812, 1659, 2426, 2679
SatI	GCNGC	5 cut(s)	258, 582, 1392, 1407, 1803
Sau3AI	GATC	9 cut(s)	529, 1012, 1064, 1549, 1654, 2076, 2195, 2538, 2653
Sau96I	GGNCC	7 cut(s)	156, 224, 961, 1093, 1585, 2210, 2365
SchI	GAGTC	5 cut(s)	371, 515, 1178, 2150, 2778
ScrFI	CCNGG	8 cut(s)	367, 449, 965, 1202, 1740, 1845, 2097, 2214
SduI	GDGCHC	5 cut(s)	210, 780, 1373, 2007, 2316
SfaNI	GCATC	6 cut(s)	289, 883, 1124, 1678, 1789, 2180
SfcI	CTRYAG	3 cut(s)	955, 1037, 1561
Sfr274I	CTCGAG	1 cut(s)	2777
SinI	GGWCC	6 cut(s)	156, 224, 961, 1093, 2210, 2365
SlaI	CTCGAG	1 cut(s)	2777
SmiMI	CAYNNNNRTG	1 cut(s)	2713
SmlI	CTYRAG	7 cut(s)	409, 833, 1166, 1419, 1672, 2669, 2777
SmoI	CTYRAG	7 cut(s)	409, 833, 1166, 1419, 1672, 2669, 2777
SpeI	ACTAGT	1 cut(s)	685
SseBI	AGGCCT	1 cut(s)	407
SsiI	CCGC	9 cut(s)	463, 541, 850, 1157, 1892, 2369, 2874, 2918, 3062
SspI	AATATT	4 cut(s)	195, 704, 1902, 2580
SspMI	CTAG	2 cut(s)	686, 2757
StuI	AGGCCT	1 cut(s)	407
StyD4I	CCNGG	8 cut(s)	365, 447, 963, 1200, 1738, 1843, 2095, 2212
StyI	CCWWGG	5 cut(s)	1537, 2126, 2329, 2397, 3003
TaaI	ACNGT	9 cut(s)	393, 1495, 1565, 2275, 2406, 2588, 2625, 2908, 2926
TaiI	ACGT	5 cut(s)	29, 178, 783, 805, 1357
TaqI	TCGA	7 cut(s)	1172, 1470, 1642, 1648, 2194, 2778, 2799
TaqII	GACCGA	1 cut(s)	241
TatI	WGTACW	4 cut(s)	84, 442, 879, 2520
TfiI	GAWTC	7 cut(s)	146, 377, 868, 886, 982, 1715, 3092
Tru1I	TTAA	7 cut(s)	596, 680, 707, 812, 1659, 2426, 2679
Tru9I	TTAA	7 cut(s)	596, 680, 707, 812, 1659, 2426, 2679
TscAI	CASTG	6 cut(s)	796, 1041, 1570, 1708, 1824, 2644
TseFI	GTSAC	2 cut(s)	1130, 1831
TseI	GCWGC	5 cut(s)	257, 581, 1391, 1406, 1802
Tsp45I	GTSAC	2 cut(s)	1130, 1831
TspGWI	ACGGA	2 cut(s)	2476, 3041
TspRI	CASTG	6 cut(s)	796, 1041, 1570, 1708, 1824, 2644
Van91I	CCANNNNNTGG	2 cut(s)	2132, 2989
VneI	GTGCAC	1 cut(s)	1369
VpaK11BI	GGWCC	6 cut(s)	156, 224, 961, 1093, 2210, 2365
XapI	RAATTY	5 cut(s)	179, 1532, 1734, 1995, 2629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1142
XhoI	CTCGAG	1 cut(s)	2777
XmiI	GTMKAC	1 cut(s)	2458
XmnI	GAANNNNTTC	2 cut(s)	392, 1600
XspI	CTAG	2 cut(s)	686, 2757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.