Rorug02G0027200

Pre-mRNA-splicing factor ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
2179214 .. 2181160
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0027200.1

Sequence Viewer

Length: 1212 bp
ATGATGATGGAGATGGCAGAAGATACAAGAGAAAATATTGTGATTGTGGGTGGTGGGATTTGTGGCCTTGCCACTGCTCTTGCTCTTCACAGGAAGGGCATAAGAAGCTTGGTCCTAGAAAGATCAGAGAGTTTGCGAGCAACGGGAGTAGCTATCATTATTCATTCTAATGGATGGCGTGCACTTGATCAACTTGGTGTTGCCTCCTATCTTAGACAAACTGCTAATCCTATACTATCGGGACAATTCAAGTCACTTAATGATAACAAGCTACAAAAATTACCAGTTGGGAAAGAAGAATTACGATGTGTGAAAAGGACTGATCTGATGAATATCATGGCTGATAATCTGCCAAAGAACACCGTACGTTTTGGGTGCAACGTACTTTCTATCGAGTTGGATCCCATAACTTCTTCTCCAGTTCTTCAACTTCAAGATGGAACCAGTTTGAATGCCAAGGCTGTGATCGGATGCGACGGAGTGAACTCTACGATTTCATATATGATGGGGGCGACGGCTACAAATATATTCAACGTATGTGGGATAAGAGGTTTCACAAGTTATCCGAGTGGTCATGAATTCGGCAGTGAGTTCAAACTCACCAAAAAAGATGATGTTCAAGTCGGACTATTGCCCATGACCACCAACCTGGTCTATTGGTTCCTTACTCGCAAATATATATCGCGCAAGTCCAAGATCTCCCACAGCCAGAAATTAATTGGGGATATGGCAGCTGCATCAGTGAAGGACTTTCCTTCTAGCATCAAAGAGATGGTAGAGAATTGCTCACTAGAGTCTCTACATCTTTCTGACTATATGAGATACCGACCAACGTGTGACATACTACGAAGACGATTTCGGGTGGGAACAGTAACAGTGGCAGGAGATGCCTGGCATGCAATGGCTCCGTTCATTGCTCAAGGTGGCTCAGCCTCTTTGGAAGATGCAGTTGTGCTGGCTAGGTGCTTGGCGCGAAAGACTATTGTTGGTATTCCAAGTGGAAGAGTAAGCAAGACGATGGTAGAAGAAGCACTTGATGAATACCTAAAAGAGCGGAAACCGCGAGTTCTAAGACTATCTTTGCAGACGTACCTAATTGGGAAAATGCATGATACTTCATCAAAATTTATCAAGTTCATATGCATTGTGTTCATGGCGATCATATTCTACGACTCGCATGGACATACTCGTTATGATTGTGGTACCCTCTGA

Protein Analysis

403

Amino Acids

44.6

Weight (kDa)

9.2

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 13 - 356 1.5e-28 FAD binding domain
DAO PF01266 13 - 51 1.9e-06 FAD dependent oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1202
AccB1I GGYRCC 1 cut(s) 1202
AccBSI CCGCTC 1 cut(s) 1054
AccII CGCG 3 cut(s) 685, 973, 1063
AciI CCGC 2 cut(s) 1054, 1061
AclWI GGATC 2 cut(s) 395, 408
AcsI RAATTY 2 cut(s) 578, 1124
AfaI GTAC 4 cut(s) 366, 384, 1091, 1204
AflIII ACRYGT 1 cut(s) 833
AgsI TTSAA 7 cut(s) 250, 428, 434, 451, 532, 595, 620
AjnI CCWGG 2 cut(s) 648, 890
AluBI AGCT 4 cut(s) 108, 152, 271, 734
AluI AGCT 4 cut(s) 108, 152, 271, 734
Alw21I GWGCWC 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 801
Alw44I GTGCAC 1 cut(s) 180
AlwI GGATC 2 cut(s) 395, 408
AoxI GGCC 1 cut(s) 64
ApaLI GTGCAC 1 cut(s) 180
ApeKI GCWGC 2 cut(s) 731, 734
ApoI RAATTY 2 cut(s) 578, 1124
AseI ATTAAT 1 cut(s) 716
Asp718I GGTACC 1 cut(s) 1202
AspLEI GCGC 2 cut(s) 687, 973
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 592
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 184
BamHI GGATCC 1 cut(s) 400
BanI GGYRCC 1 cut(s) 1202
BbsI GAAGAC 1 cut(s) 856
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 2 cut(s) 721, 743
BccI CCATC 6 cut(s) 7, 168, 431, 499, 766, 1012
BceAI ACGGC 1 cut(s) 531
BciT130I CCWGG 2 cut(s) 650, 892
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 801
BfaI CTAG 4 cut(s) 116, 759, 791, 960
BglII AGATCT 1 cut(s) 696
BisI GCNGC 2 cut(s) 732, 735
BlpI GCTNAGC 1 cut(s) 928
BlsI GCNGC 2 cut(s) 733, 736
Bme1390I CCNGG 2 cut(s) 650, 892
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 5 cut(s) 402, 442, 662, 906, 1204
BmrFI CCNGG 2 cut(s) 650, 892
BmsI GCATC 5 cut(s) 461, 746, 771, 877, 934
BpiI GAAGAC 1 cut(s) 856
BplI GAGNNNNNCTC 2 cut(s) 770, 802
BpmI CTGGAG 1 cut(s) 402
Bpu1102I GCTNAGC 1 cut(s) 928
BpuEI CTTGAG 1 cut(s) 903
BsaBI GATNNNNATC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 456
BsaXI ACNNNNNCTCC 2 cut(s) 400, 430
Bse1I ACTGG 3 cut(s) 284, 419, 444
Bse3DI GCAATG 2 cut(s) 906, 912
Bse8I GATNNNNATC 1 cut(s) 332
BseBI CCWGG 2 cut(s) 650, 892
BseDI CCNNGG 1 cut(s) 456
BseGI GGATG 2 cut(s) 179, 476
BseJI GATNNNNATC 1 cut(s) 332
BseMI GCAATG 2 cut(s) 906, 912
BseMII CTCAG 1 cut(s) 942
BseNI ACTGG 3 cut(s) 284, 419, 444
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 2 cut(s) 721, 743
Bsh1236I CGCG 3 cut(s) 685, 973, 1063
BshFI GGCC 1 cut(s) 66
BshNI GGYRCC 1 cut(s) 1202
BsiHKAI GWGCWC 1 cut(s) 184
BsiWI CGTACG 1 cut(s) 364
BslFI GGGAC 1 cut(s) 255
BsmAI GTCTC 1 cut(s) 801
BsmFI GGGAC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 7 cut(s) 122, 187, 322, 400, 465, 696, 1158
Bsp1720I GCTNAGC 1 cut(s) 928
BspACI CCGC 2 cut(s) 1054, 1061
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 941
BspFNI CGCG 3 cut(s) 685, 973, 1063
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 5 cut(s) 402, 442, 662, 906, 1204
BspPI GGATC 2 cut(s) 395, 408
BspQI GCTCTTC 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 1202
BsrBI CCGCTC 1 cut(s) 1054
BsrDI GCAATG 2 cut(s) 906, 912
BsrI ACTGG 3 cut(s) 284, 419, 444
BssECI CCNNGG 1 cut(s) 456
BssMI GATC 7 cut(s) 122, 187, 322, 400, 465, 696, 1158
BssT1I CCWWGG 1 cut(s) 456
Bst2UI CCWGG 2 cut(s) 650, 892
Bst4CI ACNGT 3 cut(s) 364, 871, 877
Bst6I CTCTTC 2 cut(s) 90, 997
BstAPI GCANNNNNTGC 1 cut(s) 887
BstC8I GCNNGC 4 cut(s) 138, 180, 897, 957
BstDEI CTNAG 3 cut(s) 212, 928, 1070
BstF5I GGATG 2 cut(s) 179, 476
BstFNI CGCG 3 cut(s) 685, 973, 1063
BstHHI GCGC 2 cut(s) 687, 973
BstKTI GATC 7 cut(s) 125, 190, 325, 403, 468, 699, 1161
BstMAI GTCTC 1 cut(s) 801
BstMBI GATC 7 cut(s) 122, 187, 322, 400, 465, 696, 1158
BstMWI GCNNNNNNNGC 4 cut(s) 105, 887, 896, 1060
BstNI CCWGG 2 cut(s) 650, 892
BstNSI RCATGY 1 cut(s) 899
BstSCI CCNGG 2 cut(s) 648, 890
BstSLI GKGCMC 1 cut(s) 184
BstUI CGCG 3 cut(s) 685, 973, 1063
BstV1I GCAGC 2 cut(s) 721, 743
BstV2I GAAGAC 1 cut(s) 856
BstX2I RGATCY 2 cut(s) 400, 696
BstXI CCANNNNNNTGG 1 cut(s) 649
BstYI RGATCY 2 cut(s) 400, 696
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 2 cut(s) 179, 476
BtsI GCAGTG 2 cut(s) 72, 592
BtsIMutI CAGTG 4 cut(s) 72, 592, 747, 882
Cac8I GCNNGC 4 cut(s) 138, 180, 897, 957
CciI TCATGA 1 cut(s) 574
CfoI GCGC 2 cut(s) 687, 973
Cfr13I GGNCC 1 cut(s) 112
CsiI ACCWGGT 1 cut(s) 648
Csp6I GTAC 4 cut(s) 365, 383, 1090, 1203
CspCI CAANNNNNGTGG 4 cut(s) 61, 96, 520, 555
CviAII CATG 7 cut(s) 337, 575, 637, 896, 1109, 1153, 1178
CviQI GTAC 4 cut(s) 365, 383, 1090, 1203
DdeI CTNAG 3 cut(s) 212, 928, 1070
DpnI GATC 7 cut(s) 124, 189, 324, 402, 467, 698, 1160
DpnII GATC 7 cut(s) 122, 187, 322, 400, 465, 696, 1158
Eam1104I CTCTTC 2 cut(s) 90, 997
EarI CTCTTC 2 cut(s) 90, 997
Eco130I CCWWGG 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 112
EcoRI GAATTC 1 cut(s) 578
EcoRII CCWGG 2 cut(s) 648, 890
EcoT14I CCWWGG 1 cut(s) 456
EcoT22I ATGCAT 2 cut(s) 1110, 1145
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 7 cut(s) 340, 578, 640, 899, 1112, 1156, 1181
FalI AAGNNNNNCTT 4 cut(s) 1017, 1049, 1063, 1095
FaqI GGGAC 1 cut(s) 255
FatI CATG 7 cut(s) 336, 574, 636, 895, 1108, 1152, 1177
FauNDI CATATG 1 cut(s) 1139
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 732, 735
FokI GGATG 2 cut(s) 186, 483
Fsp4HI GCNGC 2 cut(s) 732, 735
FspBI CTAG 4 cut(s) 116, 759, 791, 960
GlaI GCGC 2 cut(s) 686, 972
GluI GCNGC 2 cut(s) 732, 735
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 1 cut(s) 66
HhaI GCGC 2 cut(s) 687, 973
Hin1II CATG 7 cut(s) 340, 578, 640, 899, 1112, 1156, 1181
Hin6I GCGC 2 cut(s) 685, 971
HinP1I GCGC 2 cut(s) 685, 971
HindIII AAGCTT 1 cut(s) 106
HinfI GANTC 2 cut(s) 794, 1172
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 2 cut(s) 182, 484
Hpy188I TCNGA 7 cut(s) 127, 327, 470, 567, 626, 811, 1211
Hpy188III TCNNGA 3 cut(s) 240, 434, 575
Hpy8I GTNNAC 2 cut(s) 182, 484
Hpy99I CGWCG 2 cut(s) 479, 517
HpyAV CCTTC 3 cut(s) 88, 739, 765
HpyCH4III ACNGT 3 cut(s) 364, 871, 877
HpyCH4IV ACGT 5 cut(s) 367, 381, 534, 833, 1088
HpyCH4V TGCA 8 cut(s) 182, 378, 737, 899, 947, 1084, 1108, 1143
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 887, 896, 1060
HpyF3I CTNAG 3 cut(s) 212, 928, 1070
HpySE526I ACGT 5 cut(s) 367, 381, 534, 833, 1088
Hsp92II CATG 7 cut(s) 340, 578, 640, 899, 1112, 1156, 1181
HspAI GCGC 2 cut(s) 685, 971
KpnI GGTACC 1 cut(s) 1206
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 7 cut(s) 122, 187, 322, 400, 465, 696, 1158
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 910
Lsp1109I GCAGC 2 cut(s) 721, 743
LweI GCATC 5 cut(s) 461, 746, 771, 877, 934
MabI ACCWGGT 1 cut(s) 648
MaeI CTAG 4 cut(s) 116, 759, 791, 960
MaeII ACGT 5 cut(s) 367, 381, 534, 833, 1088
MaeIII GTNAC 3 cut(s) 252, 836, 871
MalI GATC 7 cut(s) 124, 189, 324, 402, 467, 698, 1160
MbiI CCGCTC 1 cut(s) 1054
MboI GATC 7 cut(s) 122, 187, 322, 400, 465, 696, 1158
MboII GAAGA 9 cut(s) 32, 77, 308, 405, 416, 861, 953, 1014, 1037
MflI RGATCY 2 cut(s) 400, 696
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 9 cut(s) 245, 278, 299, 578, 713, 717, 781, 1095, 1124
MlyI GAGTC 2 cut(s) 803, 1166
MmeI TCCRAC 2 cut(s) 378, 604
MnlI CCTC 3 cut(s) 214, 542, 943
Mph1103I ATGCAT 2 cut(s) 1110, 1145
MseI TTAA 2 cut(s) 258, 716
MslI CAYNNNNRTG 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 734
MspR9I CCNGG 2 cut(s) 650, 892
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 2 cut(s) 650, 892
MvnI CGCG 3 cut(s) 685, 973, 1063
MwoI GCNNNNNNNGC 4 cut(s) 105, 887, 896, 1060
NdeI CATATG 1 cut(s) 1139
NdeII GATC 7 cut(s) 122, 187, 322, 400, 465, 696, 1158
NlaIII CATG 7 cut(s) 340, 578, 640, 899, 1112, 1156, 1181
NlaIV GGNNCC 5 cut(s) 402, 442, 662, 906, 1204
NmuCI GTSAC 2 cut(s) 252, 836
NsiI ATGCAT 2 cut(s) 1110, 1145
NspI RCATGY 1 cut(s) 899
PaeI GCATGC 1 cut(s) 899
PagI TCATGA 1 cut(s) 574
PciSI GCTCTTC 1 cut(s) 90
PctI GAATGC 1 cut(s) 457
Pfl23II CGTACG 1 cut(s) 364
PkrI GCNGC 2 cut(s) 733, 736
PleI GAGTC 2 cut(s) 802, 1166
PpsI GAGTC 2 cut(s) 802, 1166
PshBI ATTAAT 1 cut(s) 716
Psp6I CCWGG 2 cut(s) 648, 890
PspGI CCWGG 2 cut(s) 648, 890
PspLI CGTACG 1 cut(s) 364
PspN4I GGNNCC 5 cut(s) 402, 442, 662, 906, 1204
PspPI GGNCC 1 cut(s) 112
PsuI RGATCY 2 cut(s) 400, 696
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 4 cut(s) 366, 384, 1091, 1204
RsaNI GTAC 4 cut(s) 365, 383, 1090, 1203
RseI CAYNNNNRTG 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 258, 716
SatI GCNGC 2 cut(s) 732, 735
Sau3AI GATC 7 cut(s) 122, 187, 322, 400, 465, 696, 1158
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 2 cut(s) 803, 1166
ScrFI CCNGG 2 cut(s) 650, 892
SduI GDGCHC 1 cut(s) 184
SexAI ACCWGGT 1 cut(s) 648
SfaNI GCATC 5 cut(s) 461, 746, 771, 877, 934
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 918
SmoI CTYRAG 1 cut(s) 918
SphI GCATGC 1 cut(s) 899
Sse9I AATT 9 cut(s) 245, 278, 299, 578, 713, 717, 781, 1095, 1124
SsiI CCGC 2 cut(s) 1054, 1061
SspI AATATT 1 cut(s) 37
SspMI CTAG 4 cut(s) 116, 759, 791, 960
StyD4I CCNGG 2 cut(s) 648, 890
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 3 cut(s) 364, 871, 877
TaiI ACGT 5 cut(s) 370, 384, 537, 836, 1091
TaqI TCGA 1 cut(s) 393
TasI AATT 9 cut(s) 245, 278, 299, 578, 713, 717, 781, 1095, 1124
Tru1I TTAA 2 cut(s) 258, 716
Tru9I TTAA 2 cut(s) 258, 716
TscAI CASTG 4 cut(s) 79, 592, 747, 882
TseFI GTSAC 2 cut(s) 252, 836
TseI GCWGC 2 cut(s) 731, 734
Tsp45I GTSAC 2 cut(s) 252, 836
TspDTI ATGAA 9 cut(s) 152, 344, 486, 591, 901, 1053, 1107, 1126, 1141
TspGWI ACGGA 2 cut(s) 492, 897
TspRI CASTG 4 cut(s) 79, 592, 747, 882
VneI GTGCAC 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 112
VspI ATTAAT 1 cut(s) 716
XapI RAATTY 2 cut(s) 578, 1124
XceI RCATGY 1 cut(s) 899
XcmI CCANNNNNNNNNTGG 1 cut(s) 716
XspI CTAG 4 cut(s) 116, 759, 791, 960
Zsp2I ATGCAT 2 cut(s) 1110, 1145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.