Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000463

Physical Location & Seq

Genomic Coordinates Reverse (-)

18773535 .. 18774330

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G201500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCATCTGCACCATCTTCTAGCGTGAAATATTTGGATGGTGAGGCAGATTTGGAGGGATATGGTGTGGTGATGGTGGATGAGGCCAATGAGAGAACTTTATCAACTGATATTTTATTGGGAAAACTTAAGGATATTGCTCTATCAAGGCAATGTGATTTTAAACTGCTGATTTCATGTTCAACTGAAACAGATGCCGAGAAATTGAGTGGCTTTTTTGATTCTGCTCCGGTTTTCAAAATTCCCCGAAGAAGGCTGCGGAATCTGATAAGCCACATGAAGAAGATGGAAGAAGGCTTGGTGAACCAAGCAGTGGCGAGAACACTTGAAACTCATGTGACACAGTCACGACTCACGACTCACACAATAACCTGGCAATTAACAAAAGCTTGCGGCCATGGCCAGCTGATTATCTGTCCCATAATTCATGCACAAGCTCTTGAGCCTACACCTCAAGGGGCCAGGAAGGTTGTGCTTGCAACAAGCGTAGCTGAAACTTCATTGTTAATGCTGACTGGTATTCATTATGTCATTGACTGTGGATTTTGCGTGATAAAGTCTTATCATCCGACGGCTGTGGTAGGATCGGCGTTACTTAGTCCGATTTCAAAGGCAATGGCTGTGCAGAGGGCAGAACAAGCTGGATCTATGTGTGCCATGTTATATATTTGCGGTTATTTGAATGATTTACAGGATCAGACAGCACCAGAAGAAGTACAAAGGCGTGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

245

Amino Acids

26.7

Weight (kDa)

6.65

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca	FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica	MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica	Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis	pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis	RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata	RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora	Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa	Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha	Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana	Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	313
AciI	CCGC	3 cut(s)	259, 393, 672
AclWI	GGATC	3 cut(s)	592, 652, 702
AcoI	YGGCCR	2 cut(s)	394, 400
AcsI	RAATTY	1 cut(s)	240
AfaI	GTAC	1 cut(s)	717
AfiI	CCNNNNNNNGG	2 cut(s)	252, 313
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	5 cut(s)	183, 238, 329, 609, 682
AjnI	CCWGG	2 cut(s)	371, 461
AluBI	AGCT	5 cut(s)	389, 406, 437, 491, 641
AluI	AGCT	5 cut(s)	389, 406, 437, 491, 641
AlwI	GGATC	3 cut(s)	592, 652, 702
AoxI	GGCC	4 cut(s)	84, 394, 400, 459
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	459
AsuHPI	GGTGA	3 cut(s)	53, 82, 313
BalI	TGGCCA	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	4 cut(s)	22, 32, 67, 280
BceAI	ACGGC	1 cut(s)	588
BciT130I	CCWGG	2 cut(s)	373, 463
BfaI	CTAG	1 cut(s)	21
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	2 cut(s)	257, 394
BlsI	GCNGC	2 cut(s)	258, 395
Bme1390I	CCNGG	2 cut(s)	373, 463
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	1 cut(s)	460
BmrFI	CCNGG	2 cut(s)	373, 463
BmsI	GCATC	2 cut(s)	14, 184
BpuEI	CTTGAG	2 cut(s)	438, 461
BsaJI	CCNNGG	1 cut(s)	397
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	252, 313
Bse1I	ACTGG	1 cut(s)	520
Bse3DI	GCAATG	2 cut(s)	158, 621
BseBI	CCWGG	2 cut(s)	373, 463
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	3 cut(s)	43, 85, 565
BseLI	CCNNNNNNNGG	2 cut(s)	252, 313
BseMI	GCAATG	2 cut(s)	158, 621
BseNI	ACTGG	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	243
BsgI	GTGCAG	1 cut(s)	644
BshFI	GGCC	4 cut(s)	86, 396, 402, 461
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	2 cut(s)	252, 313
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	4 cut(s)	86, 396, 402, 461
Bsp143I	GATC	3 cut(s)	584, 644, 694
Bsp19I	CCATGG	1 cut(s)	397
BspACI	CCGC	3 cut(s)	259, 393, 672
BspANI	GGCC	4 cut(s)	86, 396, 402, 461
BspLI	GGNNCC	1 cut(s)	460
BspPI	GGATC	3 cut(s)	592, 652, 702
BspTI	CTTAAG	1 cut(s)	128
BsrDI	GCAATG	2 cut(s)	158, 621
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	3 cut(s)	584, 644, 694
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	2 cut(s)	373, 463
Bst4CI	ACNGT	2 cut(s)	345, 539
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	3 cut(s)	391, 404, 477
BstDEI	CTNAG	1 cut(s)	596
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	3 cut(s)	43, 85, 565
BstKTI	GATC	3 cut(s)	587, 647, 697
BstMBI	GATC	3 cut(s)	584, 644, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	399, 638
BstNI	CCWGG	2 cut(s)	373, 463
BstSCI	CCNGG	2 cut(s)	371, 461
BstV1I	GCAGC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	644
BstYI	RGATCY	1 cut(s)	644
BsuRI	GGCC	4 cut(s)	86, 396, 402, 461
BtgI	CCRYGG	1 cut(s)	397
BtsCI	GGATG	3 cut(s)	43, 85, 565
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	391, 404, 477
Cfr13I	GGNCC	1 cut(s)	459
Csp6I	GTAC	1 cut(s)	716
CviAII	CATG	6 cut(s)	177, 277, 335, 398, 428, 658
CviQI	GTAC	1 cut(s)	716
DdeI	CTNAG	1 cut(s)	596
DpnI	GATC	3 cut(s)	586, 646, 696
DpnII	GATC	3 cut(s)	584, 644, 694
DraI	TTTAAA	1 cut(s)	163
EaeI	YGGCCR	2 cut(s)	394, 400
Eco130I	CCWWGG	1 cut(s)	397
EcoRII	CCWGG	2 cut(s)	371, 461
EcoT14I	CCWWGG	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	6 cut(s)	180, 280, 338, 401, 431, 661
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	6 cut(s)	176, 276, 334, 397, 427, 657
Fnu4HI	GCNGC	2 cut(s)	257, 394
FokI	GGATG	3 cut(s)	50, 92, 552
Fsp4HI	GCNGC	2 cut(s)	257, 394
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	2 cut(s)	257, 394
HaeIII	GGCC	4 cut(s)	86, 396, 402, 461
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	6 cut(s)	180, 280, 338, 401, 431, 661
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	4 cut(s)	221, 262, 351, 358
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	3 cut(s)	53, 82, 313
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	4 cut(s)	267, 570, 603, 699
Hpy188III	TCNNGA	3 cut(s)	348, 355, 440
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	1 cut(s)	574
HpyAV	CCTTC	3 cut(s)	246, 287, 460
HpyCH4III	ACNGT	2 cut(s)	345, 539
HpyCH4V	TGCA	4 cut(s)	11, 431, 479, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	399, 638
HpyF3I	CTNAG	1 cut(s)	596
Hsp92II	CATG	6 cut(s)	180, 280, 338, 401, 431, 661
Kzo9I	GATC	3 cut(s)	584, 644, 694
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	2 cut(s)	14, 184
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	4 cut(s)	337, 345, 591, 725
MalI	GATC	3 cut(s)	586, 646, 696
MboI	GATC	3 cut(s)	584, 644, 694
MboII	GAAGA	6 cut(s)	9, 261, 292, 295, 302, 722
MflI	RGATCY	1 cut(s)	644
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	4 cut(s)	203, 240, 377, 423
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	2 cut(s)	345, 352
MmeI	TCCRAC	1 cut(s)	593
MnlI	CCTC	5 cut(s)	37, 49, 76, 462, 621
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	4 cut(s)	129, 162, 380, 506
Msp20I	TGGCCA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	406
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	373, 463
MvaI	CCWGG	2 cut(s)	373, 463
MwoI	GCNNNNNNNGC	2 cut(s)	399, 638
NcoI	CCATGG	1 cut(s)	397
NdeII	GATC	3 cut(s)	584, 644, 694
NlaIII	CATG	6 cut(s)	180, 280, 338, 401, 431, 661
NlaIV	GGNNCC	1 cut(s)	460
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	3 cut(s)	337, 345, 725
PfeI	GAWTC	2 cut(s)	221, 262
PflFI	GACNNNGTC	1 cut(s)	343
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	2 cut(s)	258, 395
PleI	GAGTC	2 cut(s)	345, 352
PpsI	GAGTC	2 cut(s)	345, 352
Psp6I	CCWGG	2 cut(s)	371, 461
PspGI	CCWGG	2 cut(s)	371, 461
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	644
PsyI	GACNNNGTC	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	1 cut(s)	717
RsaNI	GTAC	1 cut(s)	716
SaqAI	TTAA	4 cut(s)	129, 162, 380, 506
SatI	GCNGC	2 cut(s)	257, 394
Sau3AI	GATC	3 cut(s)	584, 644, 694
Sau96I	GGNCC	1 cut(s)	459
SchI	GAGTC	2 cut(s)	345, 352
ScrFI	CCNGG	2 cut(s)	373, 463
SetI	ASST	8 cut(s)	374, 391, 408, 439, 454, 471, 493, 643
SfaNI	GCATC	2 cut(s)	14, 184
SmlI	CTYRAG	3 cut(s)	128, 440, 453
SmoI	CTYRAG	3 cut(s)	128, 440, 453
Sse9I	AATT	4 cut(s)	203, 240, 377, 423
SsiI	CCGC	3 cut(s)	259, 393, 672
SspI	AATATT	1 cut(s)	32
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	371, 461
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	2 cut(s)	345, 539
TasI	AATT	4 cut(s)	203, 240, 377, 423
TatI	WGTACW	1 cut(s)	715
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	2 cut(s)	221, 262
Tru1I	TTAA	4 cut(s)	129, 162, 380, 506
Tru9I	TTAA	4 cut(s)	129, 162, 380, 506
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	3 cut(s)	337, 345, 725
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	3 cut(s)	337, 345, 725
TspDTI	ATGAA	5 cut(s)	165, 293, 416, 489, 512
TspRI	CASTG	1 cut(s)	318
Tth111I	GACNNNGTC	1 cut(s)	343
Van91I	CCANNNNNTGG	1 cut(s)	313
Vha464I	CTTAAG	1 cut(s)	128
XapI	RAATTY	1 cut(s)	240
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.