Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000463

Physical Location & Seq

Genomic Coordinates Forward (+)

3228588 .. 3237433

Gene Structure 8846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1042900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2889 bp

ATGACCTCCATTACCTCCGTCCAGTTGAATTGCCCAGTCTTTCGTTACCTTCAGGAATCAGCTAAACAAGCAAAATCACCGGCTGGTGTTGTAGGCAAGTTTGTAGAATATGGGTTTTCTTCATCAGCTGAAACAAGTGCATTTGCTGAAGACATTTTTTCTAGAGTGCCCCGTAAAGAATCTGGTTTGAATCAATATCAGAAACAAGAGAGGGAAGCTGCATTGTTGGTCAGGAAGCAGCAGACATATGCTCTTTTGGATGCAGATGATGACGACGACGAAGATGGAGGTAGATCATCTGTCCCTGTTGTTTCAGAGTCAAGGAAACCAGATTCCCATAAGAAGCGGTTTAGGAAGAAGGGTTTGAGTCAAGTAGATGAAGACGATGAGGGGATTGCACAAGAGGAAGAAAAGAGAAGGGTAAAAAGACGAACTTCACCAGATGAAGATGATGGTTCAGAGTCAGAAGAAGAAAGATTGCGTGATCAAAGAGAGAGGGAGCAATTGGAGCGGAATATAAGGGAGCGGGACACAACAGCAACACGAAAGGAGGCTATTCGGAGAACAAATGCTTTTGAGAAAATTGACATTGAAGATTTAAGAAAAGTTTCAAGACAAGAATATCTAAAGAAAAGGGAGCAAAAGAAGTTGGAGGAAATCAGAGATGATTTAGAGGATGAGCAATACTTATTTGATGGCGTGAAACTCACTGAAGCAGAATATCGCGAATTAAGTTACAAGAAACAAATATACGAAATTGTGAGGAAGAGGTCAGATGAGCCTGAGGATGCCAATGAGTACAGGATGCCGGATGCCTATGATGACAAGAATGGTGTTAATCAGGAGAAGAGATTTTCTAGTGCTGGGGATAAAATGATCCCATTTGCAGAACAGGAAGCTTGGGAGGATCACCAAATTGGAAAGGCAACGCTGAAATTTGGTTCAAAAAATAAAAAGCAAATGTCAGATGACTATCGAATTGTATTTGAGGACCAGATTGAGTTTATCAAGGCATCGGTGATGGATGGTGATAAGTTTGATGATGATGGGGAACCCTCCGAGTTACTTGTGTCGAGGGTGAAATCAGCCTTAGAGAAGCTCCAGGAGGATAGAAAAACATTACCCATCTACACATACCGTGAATCATTGCTCGATGCTGTTGAAAAACATCAGGTCCTTATTATTGTTGGTGAAACCGGTTCTGGAAAAACTACACAGATACCCCAATATCTTCACGAGGCCGGATACACAAAGCGTGGAAAGATTGGATGCACACAACCACGGCGAGTTGCTGCTATGAGTGTTGCTGCAAGGGTTTCTCAAGAAATGGGGGTTAAACTTGGGCATGAGACTGTTTTGAAATATATGACAGATGGAATGCTGTTGCAAGAATTCCTTGGTGAACCCGATCTGGCTAGCTACAGTGTCGTGATGGTGGACGAGGCCCATGAGCGAACACTGTCAACTGATATTCTATTTGGATTAGTAAAGGATATTGCTCGGTTTAGACCCGATCTTAAACTGCTTATCTCAAGTGCAACGCTTGATGCTGAAAAGTTCAGTGATTATTTTGATTCTGCTCCAATTTTTAAAATTCCTGGGAGGAGGTATCCTGTTGAAATACATTACACGAAAGCACCAGAAGCTGATTACTTAGATGCAGCAATTGTAACTGCACTCCAAATCCATGTGACGCAACCTCCAGGAGATATATTGGTGTTCCTCACTGGTCAAGAAGAAATCGAGACAGCAGAAGAAATAATGAAGCACAGAACACGGGGTCTAGGGACAAAAATTGCTGAGCTGATTATTTGTCCCATATATGCAAACCTACCAACTGAGCTGCAATCAAAAATTTTTGAACCCACACCTGAAGGGGCAAGGAAGGTTATCCTTGCCACAAATATTGCAGAAACTTCGCTTACCATTGATGGGATCAAATATGTTATTGACCCTGGTTTTTGCAAGATGAAGTCCTATAATCCAAGGACTGGTATGGAGTCGTTGTTAATCACTCCCATCTCAAAGGCATCAGCAATGCAGAGGGCAGGTCGATCTGGTCGAACGGGTCCTGGAAAGTGCTACCGCTTATATACTGCCTACAATTATTACAATGATTTGGACGACAACACAGTACCAGAAGTGCAGAGGACTAATCTCGCAAATGTTGTGCTTTCATTGAAGAGCCTTGGTATTCATGACTTGTTACATTTTGATTTTATGGACCCTCCACCATCTGAAGCATTACTAAAAGCCCTGGAACTTTTATTTGCACTAAGTGCATTAAATAAGGTGGGTGAGTTGACTAAAGTTGGTCGAAGGATGGCAGAGTTTCCACTTGACCCCATGCTATCTAAGATGATAGTTGCTTCTGATAAGTACAAGTGTTCAGATGAGATTATTTCCATTGCTGCCATGCTTTCCATTGGTAATTCAATCTTTTACCGTCCAAAGGACAAGCAAGTCCATGCGGACAATGCACGATTGAATTTTCACATGGGGAACGTCGGAGATCACATTGCGTTGCTCAAGTTTTATAATTCATGGAAAGAGACCAATTATTCAACCCAGTGGTGTTACGAGAATTATGTACAGGTGAGAAGCATGAAGCGTGCTAGAGATATTAGAGACCAGCTCGAGGGACTCTTGGAGAGGGTGGAGATTGAGCTGGTTTCAAATATGAGTGATAACGAGACTATAAAGAAGGCCATTACATCTGGTTTCTTCCCTCATTCTGCAAAGCTTCAAAAGAATGGATCTTATAGAACGGTCAAACATCCGCAGACTGTCCATATACATCCGAGCTCAGGGCTGTCACAGGTAAAGAAGAATTGCATTATCCTCGTTGCTACTTGCCATATGAATTTAGTCTTTTGGTTTGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

963

Amino Acids

109.57

Weight (kDa)

5.86

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_22	PF13401	390 - 499	2e-06	AAA domain
Helicase_C	PF00271	564 - 690	5.3e-12	Helicase conserved C-terminal domain
WHD_HA2	PF04408	752 - 780	9.2e-10	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	781 - 842	2.9e-11	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	900 - 942	1.6e-07	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca	FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica	MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica	Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis	pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis	RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata	RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora	Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa	Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha	Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana	Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2538
AasI	GACNNNNNNGTC	1 cut(s)	2462
Acc36I	ACCTGC	1 cut(s)	2039
AccB7I	CCANNNNNTGG	1 cut(s)	1991
AccBSI	CCGCTC	2 cut(s)	511, 526
AccII	CGCG	1 cut(s)	726
AciI	CCGC	6 cut(s)	346, 511, 526, 2086, 2471, 2780
AclWI	GGATC	4 cut(s)	871, 915, 1943, 2764
AcsI	RAATTY	6 cut(s)	935, 1391, 1593, 1854, 2488, 2863
AcuI	CTGAAG	5 cut(s)	35, 168, 732, 1893, 2259
AdeI	CACNNNGTG	1 cut(s)	2279
AfaI	GTAC	4 cut(s)	800, 2136, 2381, 2592
AfiI	CCNNNNNNNGG	5 cut(s)	1932, 1991, 2452, 2638, 2807
AgeI	ACCGGT	1 cut(s)	1196
AjnI	CCWGG	6 cut(s)	1101, 1597, 1702, 1954, 2071, 2256
Alw21I	GWGCWC	1 cut(s)	2807
Alw26I	GTCTC	5 cut(s)	1343, 1739, 2546, 2622, 2687
AlwI	GGATC	4 cut(s)	871, 915, 1943, 2764
AlwNI	CAGNNNCTG	1 cut(s)	1646
Ama87I	CYCGRG	1 cut(s)	2636
AoxI	GGCC	3 cut(s)	1239, 1443, 2706
ApeKI	GCWGC	7 cut(s)	218, 238, 1292, 1307, 1661, 1843, 2411
ApoI	RAATTY	6 cut(s)	935, 1391, 1593, 1854, 2488, 2863
AsiGI	ACCGGT	1 cut(s)	1196
Asp700I	GAANNNNTTC	1 cut(s)	607
AspS9I	GGNCC	5 cut(s)	991, 1174, 1444, 2069, 2224
AsuNHI	GCTAGC	1 cut(s)	1415
AvaI	CYCGRG	1 cut(s)	2636
AvaII	GGWCC	4 cut(s)	991, 1174, 2069, 2224
AxyI	CCTNAGG	1 cut(s)	783
BaeGI	GKGCMC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	2807
BauI	CACGAG	1 cut(s)	1235
BbsI	GAAGAC	2 cut(s)	156, 387
Bbv12I	GWGCWC	1 cut(s)	2807
BbvI	GCAGC	7 cut(s)	205, 250, 1279, 1294, 1673, 1830, 2398
BceAI	ACGGC	1 cut(s)	1298
BcgI	CGANNNNNNTGC	4 cut(s)	1899, 1933, 2824, 2858
BciT130I	CCWGG	6 cut(s)	1103, 1599, 1704, 1956, 2073, 2258
BciVI	GTATCC	2 cut(s)	1238, 1620
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	5 cut(s)	1343, 1739, 2546, 2622, 2687
BfaI	CTAG	5 cut(s)	162, 858, 1416, 1784, 2616
BfmI	CTRYAG	1 cut(s)	1420
BfuAI	ACCTGC	1 cut(s)	2039
BfuI	GTATCC	2 cut(s)	1238, 1620
BisI	GCNGC	7 cut(s)	219, 239, 1293, 1308, 1662, 1844, 2412
BlpI	GCTNAGC	1 cut(s)	1800
BlsI	GCNGC	7 cut(s)	220, 240, 1294, 1309, 1663, 1845, 2413
Bme1390I	CCNGG	6 cut(s)	1103, 1599, 1704, 1956, 2073, 2258
Bme18I	GGWCC	4 cut(s)	991, 1174, 2069, 2224
BmeT110I	CYCGRG	1 cut(s)	2636
BmgT120I	GGNCC	5 cut(s)	991, 1174, 1444, 2069, 2224
BmiI	GGNNCC	3 cut(s)	1053, 2070, 2226
BmrFI	CCNGG	6 cut(s)	1103, 1599, 1704, 1956, 2073, 2258
BmrI	ACTGGG	2 cut(s)	29, 2563
BmtI	GCTAGC	1 cut(s)	1419
BmuI	ACTGGG	2 cut(s)	29, 2563
BpiI	GAAGAC	2 cut(s)	156, 387
BplI	GAGNNNNNCTC	2 cut(s)	2619, 2651
BpmI	CTGGAG	2 cut(s)	1085, 1686
Bpu10I	CCTNAGC	1 cut(s)	2806
Bpu1102I	GCTNAGC	1 cut(s)	1800
BpuEI	CTTGAG	3 cut(s)	1305, 1516, 2513
BsaBI	GATNNNNATC	1 cut(s)	972
BsaI	GGTCTC	2 cut(s)	2546, 2622
BsaJI	CCNNGG	7 cut(s)	1280, 1396, 1598, 1954, 1985, 2188, 2256
BsaWI	WCCGGW	1 cut(s)	1196
BsaXI	ACNNNNNCTCC	4 cut(s)	1684, 1714, 1991, 2021
Bsc4I	CCNNNNNNNGG	5 cut(s)	1932, 1991, 2452, 2638, 2807
Bse118I	RCCGGY	2 cut(s)	79, 1196
Bse1I	ACTGG	5 cut(s)	22, 35, 1732, 1996, 2569
Bse21I	CCTNAGG	1 cut(s)	783
Bse3DI	GCAATG	4 cut(s)	1145, 2043, 2406, 2517
Bse8I	GATNNNNATC	1 cut(s)	972
BseBI	CCWGG	6 cut(s)	1103, 1599, 1704, 1956, 2073, 2258
BseDI	CCNNGG	7 cut(s)	1280, 1396, 1598, 1954, 1985, 2188, 2256
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	5 cut(s)	1932, 1991, 2452, 2638, 2807
BseMI	GCAATG	4 cut(s)	1145, 2043, 2406, 2517
BseMII	CTCAG	4 cut(s)	774, 1791, 1830, 2820
BseNI	ACTGG	5 cut(s)	22, 35, 1732, 1996, 2569
BseRI	GAGGAG	1 cut(s)	1618
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	7 cut(s)	205, 250, 1279, 1294, 1673, 1830, 2398
BseYI	CCCAGC	1 cut(s)	863
BsgI	GTGCAG	2 cut(s)	1659, 2165
Bsh1236I	CGCG	1 cut(s)	726
BshFI	GGCC	3 cut(s)	1241, 1445, 2708
BshTI	ACCGGT	1 cut(s)	1196
BsiHKAI	GWGCWC	1 cut(s)	2807
BsiHKCI	CYCGRG	1 cut(s)	2636
BsiSI	CCGG	4 cut(s)	80, 809, 1197, 1242
BslFI	GGGAC	5 cut(s)	287, 542, 1800, 1801, 2655
BslI	CCNNNNNNNGG	5 cut(s)	1932, 1991, 2452, 2638, 2807
BsmAI	GTCTC	5 cut(s)	1343, 1739, 2546, 2622, 2687
BsmFI	GGGAC	5 cut(s)	287, 542, 1800, 1801, 2655
BsmI	GAATGC	1 cut(s)	1383
BsnI	GGCC	3 cut(s)	1241, 1445, 2708
Bso31I	GGTCTC	2 cut(s)	2546, 2622
BsoBI	CYCGRG	1 cut(s)	2636
Bsp1286I	GDGCHC	2 cut(s)	171, 2807
Bsp1407I	TGTACA	1 cut(s)	2590
Bsp1720I	GCTNAGC	1 cut(s)	1800
Bsp68I	TCGCGA	1 cut(s)	726
BspACI	CCGC	6 cut(s)	346, 511, 526, 2086, 2471, 2780
BspANI	GGCC	3 cut(s)	1241, 1445, 2708
BspCNI	CTCAG	4 cut(s)	775, 1792, 1831, 2819
BspFNI	CGCG	1 cut(s)	726
BspHI	TCATGA	1 cut(s)	2197
BspLI	GGNNCC	3 cut(s)	1053, 2070, 2226
BspMI	ACCTGC	1 cut(s)	2039
BspOI	GCTAGC	1 cut(s)	1419
BspPI	GGATC	4 cut(s)	871, 915, 1943, 2764
BspQI	GCTCTTC	1 cut(s)	2177
BspTNI	GGTCTC	2 cut(s)	2546, 2622
BsrBI	CCGCTC	2 cut(s)	511, 526
BsrDI	GCAATG	4 cut(s)	1145, 2043, 2406, 2517
BsrFI	RCCGGY	2 cut(s)	79, 1196
BsrGI	TGTACA	1 cut(s)	2590
BsrI	ACTGG	5 cut(s)	22, 35, 1732, 1996, 2569
BssAI	RCCGGY	2 cut(s)	79, 1196
BssECI	CCNNGG	7 cut(s)	1280, 1396, 1598, 1954, 1985, 2188, 2256
BssSI	CACGAG	1 cut(s)	1235
BssT1I	CCWWGG	3 cut(s)	1396, 1985, 2188
Bst2BI	CACGAG	1 cut(s)	1235
Bst2UI	CCWGG	6 cut(s)	1103, 1599, 1704, 1956, 2073, 2258
Bst4CI	ACNGT	8 cut(s)	1139, 1354, 1424, 1461, 2134, 2447, 2770, 2788
Bst6I	CTCTTC	3 cut(s)	761, 842, 2177
BstAPI	GCANNNNNTGC	1 cut(s)	2279
BstAUI	TGTACA	1 cut(s)	2590
BstC8I	GCNNGC	2 cut(s)	1417, 2613
BstDEI	CTNAG	8 cut(s)	783, 1090, 1654, 1800, 1839, 2276, 2355, 2806
BstDSI	CCRYGG	1 cut(s)	1280
BstFNI	CGCG	1 cut(s)	726
BstMAI	GTCTC	5 cut(s)	1343, 1739, 2546, 2622, 2687
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 508, 1643, 2279, 2477
BstNI	CCWGG	6 cut(s)	1103, 1599, 1704, 1956, 2073, 2258
BstSCI	CCNGG	6 cut(s)	1101, 1597, 1702, 1954, 2071, 2256
BstSFI	CTRYAG	1 cut(s)	1420
BstSLI	GKGCMC	1 cut(s)	171
BstUI	CGCG	1 cut(s)	726
BstV1I	GCAGC	7 cut(s)	205, 250, 1279, 1294, 1673, 1830, 2398
BstV2I	GAAGAC	2 cut(s)	156, 387
BstX2I	RGATCY	1 cut(s)	2756
BstYI	RGATCY	1 cut(s)	2756
Bsu36I	CCTNAGG	1 cut(s)	783
BsuI	GTATCC	2 cut(s)	1238, 1620
BsuRI	GGCC	3 cut(s)	1241, 1445, 2708
BtgI	CCRYGG	1 cut(s)	1280
BtsIMutI	CAGTG	6 cut(s)	708, 1429, 1457, 1567, 1725, 2576
BtuMI	TCGCGA	1 cut(s)	726
BveI	ACCTGC	1 cut(s)	2039
Cac8I	GCNNGC	2 cut(s)	1417, 2613
CaiI	CAGNNNCTG	1 cut(s)	1646
CciI	TCATGA	1 cut(s)	2197
Cfr10I	RCCGGY	2 cut(s)	79, 1196
Cfr13I	GGNCC	5 cut(s)	991, 1174, 1444, 2069, 2224
CseI	GACGC	1 cut(s)	1702
Csp6I	GTAC	4 cut(s)	799, 2135, 2380, 2591
CspAI	ACCGGT	1 cut(s)	1196
CspCI	CAANNNNNGTGG	2 cut(s)	1888, 1923
CviQI	GTAC	4 cut(s)	799, 2135, 2380, 2591
DdeI	CTNAG	8 cut(s)	783, 1090, 1654, 1800, 1839, 2276, 2355, 2806
DraI	TTTAAA	1 cut(s)	1591
DraIII	CACNNNGTG	1 cut(s)	2279
DrdI	GACNNNNNNGTC	1 cut(s)	2462
DseDI	GACNNNNNNGTC	1 cut(s)	2462
Eam1104I	CTCTTC	3 cut(s)	761, 842, 2177
EarI	CTCTTC	3 cut(s)	761, 842, 2177
Ecl136II	GAGCTC	1 cut(s)	2805
Eco130I	CCWWGG	3 cut(s)	1396, 1985, 2188
Eco24I	GRGCYC	1 cut(s)	2807
Eco31I	GGTCTC	2 cut(s)	2546, 2622
Eco47I	GGWCC	4 cut(s)	991, 1174, 2069, 2224
Eco53kI	GAGCTC	1 cut(s)	2805
Eco57I	CTGAAG	5 cut(s)	35, 168, 732, 1893, 2259
Eco81I	CCTNAGG	1 cut(s)	783
Eco88I	CYCGRG	1 cut(s)	2636
EcoICRI	GAGCTC	1 cut(s)	2805
EcoO109I	RGGNCCY	2 cut(s)	1174, 2069
EcoRI	GAATTC	1 cut(s)	1391
EcoRII	CCWGG	6 cut(s)	1101, 1597, 1702, 1954, 2071, 2256
EcoT14I	CCWWGG	3 cut(s)	1396, 1985, 2188
EcoT38I	GRGCYC	1 cut(s)	2807
ErhI	CCWWGG	3 cut(s)	1396, 1985, 2188
FalI	AAGNNNNNCTT	4 cut(s)	418, 450, 1380, 1412
FaqI	GGGAC	5 cut(s)	287, 542, 1800, 1801, 2655
FauI	CCCGC	1 cut(s)	519
FauNDI	CATATG	2 cut(s)	247, 2859
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	7 cut(s)	219, 239, 1293, 1308, 1662, 1844, 2412
FriOI	GRGCYC	1 cut(s)	2807
Fsp4HI	GCNGC	7 cut(s)	219, 239, 1293, 1308, 1662, 1844, 2412
FspBI	CTAG	5 cut(s)	162, 858, 1416, 1784, 2616
GluI	GCNGC	7 cut(s)	219, 239, 1293, 1308, 1662, 1844, 2412
GsaI	CCCAGC	1 cut(s)	867
GsuI	CTGGAG	2 cut(s)	1085, 1686
HaeIII	GGCC	3 cut(s)	1241, 1445, 2708
HapII	CCGG	4 cut(s)	80, 809, 1197, 1242
HgaI	GACGC	1 cut(s)	1702
HincII	GTYRAC	2 cut(s)	1464, 2304
HindII	GTYRAC	2 cut(s)	1464, 2304
HindIII	AAGCTT	2 cut(s)	897, 2741
HpaII	CCGG	4 cut(s)	80, 809, 1197, 1242
Hpy166II	GTNNAC	4 cut(s)	1403, 1438, 1464, 2304
Hpy8I	GTNNAC	4 cut(s)	1403, 1438, 1464, 2304
Hpy99I	CGWCG	3 cut(s)	278, 281, 2510
HpyAV	CCTTC	7 cut(s)	59, 352, 411, 1868, 1879, 2313, 2698
HpyCH4III	ACNGT	8 cut(s)	1139, 1354, 1424, 1461, 2134, 2447, 2770, 2788
HpyCH4IV	ACGT	1 cut(s)	2505
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 508, 1643, 2279, 2477
HpyF3I	CTNAG	8 cut(s)	783, 1090, 1654, 1800, 1839, 2276, 2355, 2806
HpySE526I	ACGT	1 cut(s)	2505
Ksp22I	TGATCA	1 cut(s)	484
LguI	GCTCTTC	1 cut(s)	2177
LmnI	GCTCC	6 cut(s)	499, 508, 523, 637, 1104, 1585
Lsp1109I	GCAGC	7 cut(s)	205, 250, 1279, 1294, 1673, 1830, 2398
MaeI	CTAG	5 cut(s)	162, 858, 1416, 1784, 2616
MaeII	ACGT	1 cut(s)	2505
MaeIII	GTNAC	8 cut(s)	44, 734, 1062, 1669, 1690, 2205, 2576, 2814
MbiI	CCGCTC	2 cut(s)	511, 526
MfeI	CAATTG	2 cut(s)	503, 1665
MflI	RGATCY	1 cut(s)	2756
MhlI	GDGCHC	2 cut(s)	171, 2807
MlyI	GAGTC	5 cut(s)	326, 376, 470, 2009, 2637
MmeI	TCCRAC	2 cut(s)	630, 2488
MroXI	GAANNNNTTC	1 cut(s)	607
MseI	TTAA	8 cut(s)	599, 731, 837, 1335, 1518, 1590, 2009, 2285
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	4 cut(s)	80, 809, 1197, 1242
MspR9I	CCNGG	6 cut(s)	1103, 1599, 1704, 1956, 2073, 2258
MunI	CAATTG	2 cut(s)	503, 1665
Mva1269I	GAATGC	1 cut(s)	1383
MvaI	CCWGG	6 cut(s)	1103, 1599, 1704, 1956, 2073, 2258
MvnI	CGCG	1 cut(s)	726
MwoI	GCNNNNNNNGC	5 cut(s)	68, 508, 1643, 2279, 2477
NdeI	CATATG	2 cut(s)	247, 2859
NheI	GCTAGC	1 cut(s)	1415
NlaIV	GGNNCC	3 cut(s)	1053, 2070, 2226
NmuCI	GTSAC	2 cut(s)	1690, 2814
NruI	TCGCGA	1 cut(s)	726
PaeR7I	CTCGAG	1 cut(s)	2636
PagI	TCATGA	1 cut(s)	2197
PciSI	GCTCTTC	1 cut(s)	2177
PcsI	WCGNNNNNNNCGW	1 cut(s)	2059
PctI	GAATGC	1 cut(s)	1383
PdmI	GAANNNNTTC	1 cut(s)	607
PfeI	GAWTC	6 cut(s)	56, 179, 190, 332, 1142, 1574
PflMI	CCANNNNNTGG	1 cut(s)	1991
PfoI	TCCNGGA	3 cut(s)	1101, 1702, 2071
PinAI	ACCGGT	1 cut(s)	1196
PkrI	GCNGC	7 cut(s)	220, 240, 1294, 1309, 1663, 1845, 2413
PleI	GAGTC	5 cut(s)	325, 375, 469, 2008, 2637
PpsI	GAGTC	5 cut(s)	325, 375, 469, 2008, 2637
PpuMI	RGGWCCY	2 cut(s)	1174, 2069
PsiI	TTATAA	1 cut(s)	2538
Psp124BI	GAGCTC	1 cut(s)	2807
Psp5II	RGGWCCY	2 cut(s)	1174, 2069
Psp6I	CCWGG	6 cut(s)	1101, 1597, 1702, 1954, 2071, 2256
PspFI	CCCAGC	1 cut(s)	863
PspGI	CCWGG	6 cut(s)	1101, 1597, 1702, 1954, 2071, 2256
PspN4I	GGNNCC	3 cut(s)	1053, 2070, 2226
PspPI	GGNCC	5 cut(s)	991, 1174, 1444, 2069, 2224
PspPPI	RGGWCCY	2 cut(s)	1174, 2069
PspXI	VCTCGAGB	1 cut(s)	2636
PstNI	CAGNNNCTG	1 cut(s)	1646
PsuI	RGATCY	1 cut(s)	2756
PvuII	CAGCTG	1 cut(s)	128
RruI	TCGCGA	1 cut(s)	726
RsaI	GTAC	4 cut(s)	800, 2136, 2381, 2592
RsaNI	GTAC	4 cut(s)	799, 2135, 2380, 2591
SacI	GAGCTC	1 cut(s)	2807
SapI	GCTCTTC	1 cut(s)	2177
SaqAI	TTAA	8 cut(s)	599, 731, 837, 1335, 1518, 1590, 2009, 2285
SatI	GCNGC	7 cut(s)	219, 239, 1293, 1308, 1662, 1844, 2412
Sau96I	GGNCC	5 cut(s)	991, 1174, 1444, 2069, 2224
SchI	GAGTC	5 cut(s)	326, 376, 470, 2009, 2637
ScrFI	CCNGG	6 cut(s)	1103, 1599, 1704, 1956, 2073, 2258
SduI	GDGCHC	2 cut(s)	171, 2807
SfcI	CTRYAG	1 cut(s)	1420
Sfr274I	CTCGAG	1 cut(s)	2636
SinI	GGWCC	4 cut(s)	991, 1174, 2069, 2224
SlaI	CTCGAG	1 cut(s)	2636
SmlI	CTYRAG	4 cut(s)	1320, 1531, 2528, 2636
SmoI	CTYRAG	4 cut(s)	1320, 1531, 2528, 2636
SsiI	CCGC	6 cut(s)	346, 511, 526, 2086, 2471, 2780
SspI	AATATT	1 cut(s)	1906
SspMI	CTAG	5 cut(s)	162, 858, 1416, 1784, 2616
SstI	GAGCTC	1 cut(s)	2807
StyD4I	CCNGG	6 cut(s)	1101, 1597, 1702, 1954, 2071, 2256
StyI	CCWWGG	3 cut(s)	1396, 1985, 2188
TaaI	ACNGT	8 cut(s)	1139, 1354, 1424, 1461, 2134, 2447, 2770, 2788
TaiI	ACGT	1 cut(s)	2508
TaqI	TCGA	8 cut(s)	976, 1073, 1152, 1743, 2053, 2062, 2317, 2637
TatI	WGTACW	3 cut(s)	798, 2379, 2590
TfiI	GAWTC	6 cut(s)	56, 179, 190, 332, 1142, 1574
Tru1I	TTAA	8 cut(s)	599, 731, 837, 1335, 1518, 1590, 2009, 2285
Tru9I	TTAA	8 cut(s)	599, 731, 837, 1335, 1518, 1590, 2009, 2285
TscAI	CASTG	6 cut(s)	715, 1429, 1464, 1567, 1732, 2576
TseFI	GTSAC	2 cut(s)	1690, 2814
TseI	GCWGC	7 cut(s)	218, 238, 1292, 1307, 1661, 1843, 2411
Tsp45I	GTSAC	2 cut(s)	1690, 2814
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	6 cut(s)	715, 1429, 1464, 1567, 1732, 2576
Van91I	CCANNNNNTGG	1 cut(s)	1991
VpaK11BI	GGWCC	4 cut(s)	991, 1174, 2069, 2224
XapI	RAATTY	6 cut(s)	935, 1391, 1593, 1854, 2488, 2863
XbaI	TCTAGA	1 cut(s)	161
XhoI	CTCGAG	1 cut(s)	2636
XmnI	GAANNNNTTC	1 cut(s)	607
XspI	CTAG	5 cut(s)	162, 858, 1416, 1784, 2616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.