Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000463

Physical Location & Seq

Genomic Coordinates Forward (+)

32378249 .. 32381363

Gene Structure 3115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGAAAAGCGGCATTCATGCACTTTTCGTGGGGTATGGACGAGAACTGGATATTGCTCGATTTCGACCTGATCTTAAACTACTTATCTCAAGTGCAACACTTGATGCTGAGAAGTTCAGTGATTATTTTGATTCTGCTCCAATTTTCAAAATTCCGGGGAGGCGTTATCCTGTTGAAATAAATTACACAAAAGCACCAGAAGCTGATTACTTGGATGCAGCAATTGTTACTGCACTGCAAATCCATGTGACAGAAGCACCTGGAGATATATTAGTGTTCCTGACAGGTCAAGAAGAAATTGAAACAGCGGAAGAAATATTGAAGCACAGAACAAGGGGCTTAGGGACAAAAATTGCCGAGCTTATTATTTGTCCCATATATGCAAACCTACCTACTGAGCTACAATCCAAAATTTTTGAGCCCACACCTGAAGGGGCAAGGAAAGTTGTCCTCGCTACAAATATAGCTGAAACTTCACTAACTATTGATGGGATCAAATATGTTATTGACCCAGGGTTTTGCAAGATGAAGTCATATAATCCAAGGACTGGGATGGAGTCGTTGCTGGTCGCTCCCATCTCAAAGGCATCAGCCAATCAGAGGGCAGGTCGATCTGGGAGAACGGGTCCTGGAAAGTGCTACCGGCTATTTACTATGTTCAATTACCAAACTGAGTTAGAAGATAACACGGTACCAGAAATACAGAGGACTAACCTTGCAAATGTTGTGCTCATGCTGAAAAGCCTTGGTATCCATGATCTATTACATTTTGATTTTATGGACCCGCCACCATCAGAGGCATTACTGAAAGCCTTGGAACTGTTATTTGCACTAAGTGCATTAAATAAAGTGGGTGAGTTGACTAAAGTTGGTAGACGGATGGCCGAGTTTCCTCTTGATCCTATGCTATCTAAGATGATGGTTGCTTCTGATAAGTACAAGTGTTCAGACGAGATCATTTCCATTGCTTCCATGCTTTCCATTGGTAATTCAATATTTTACCGTCCAAAGGACAAACAAGTCCATGCTGACAATGCACGGTTGAATTTTCACACTGGGAATGTGGGAGATCACATCGCATTGCTCAAGGTCAGGAGTATGAAGCGCGCTAGAGATATTAGAGACCAGCTCGAGGGACTCTTGGAGAGGGTCGAGATTGAGCAGGTCTCAAATCCTGATTTTGAAGTTATAAAGAAGGCCATTACATCTGGCTTTTTCCCTCATTCCGCAAGACTGCAAAAGAGTGGAGCTTATAGAACAGTCAAACATCCGCAGACTGTCCACATACACCCCAGCTCAGGGCTTTCTCAGGTGCTTCCAAGATGGGTTATATACCATGAGTTGGTGCTTACAACCAAGGAATATATGAGACAGGTAACAGAACTGAAGCCAGAGTGGTTGGTGGAAATAGCTCCGCATTATTACCAGCTAAAGGATGTTGAAGATTCGGTGTCAAAGAAAATGCCTCGTGGAGAAGGGCGCGCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

496

Amino Acids

55.7

Weight (kDa)

8.14

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	83 - 209	3.3e-12	Helicase conserved C-terminal domain
WHD_HA2	PF04408	271 - 299	4.2e-10	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	300 - 361	2.9e-11	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	397 - 474	2.5e-24	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca	FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica	MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica	Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis	pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis	RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata	RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora	Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa	Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha	Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana	Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1190
AasI	GACNNNNNNGTC	1 cut(s)	1019
Acc36I	ACCTGC	2 cut(s)	596, 1153
Acc65I	GGTACC	1 cut(s)	691
AccB1I	GGYRCC	1 cut(s)	691
AccB7I	CCANNNNNTGG	2 cut(s)	548, 1342
AccI	GTMKAC	1 cut(s)	874
AccII	CGCG	2 cut(s)	1107, 1482
AciI	CCGC	6 cut(s)	9, 308, 785, 1227, 1271, 1415
AclWI	GGATC	2 cut(s)	500, 893
AcoI	YGGCCR	1 cut(s)	882
AcsI	RAATTY	3 cut(s)	150, 411, 1045
AcuI	CTGAAG	2 cut(s)	450, 1406
AdeI	CACNNNGTG	1 cut(s)	836
AfaI	GTAC	2 cut(s)	693, 938
AfiI	CCNNNNNNNGG	8 cut(s)	548, 600, 1009, 1132, 1298, 1299, 1342, 1432
AgsI	TTSAA	9 cut(s)	148, 176, 302, 322, 661, 993, 1045, 1184, 1442
AjnI	CCWGG	3 cut(s)	259, 511, 628
AluBI	AGCT	9 cut(s)	203, 361, 400, 467, 1129, 1250, 1296, 1412, 1429
AluI	AGCT	9 cut(s)	203, 361, 400, 467, 1129, 1250, 1296, 1412, 1429
Alw21I	GWGCWC	1 cut(s)	732
Alw26I	GTCTC	3 cut(s)	1116, 1171, 1363
AlwI	GGATC	2 cut(s)	500, 893
AlwNI	CAGNNNCTG	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	1130
AoxI	GGCC	2 cut(s)	882, 1197
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	3 cut(s)	150, 411, 1045
Asp718I	GGTACC	1 cut(s)	691
AspLEI	GCGC	4 cut(s)	1107, 1109, 1482, 1484
AspS9I	GGNCC	2 cut(s)	626, 781
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	866
AvaI	CYCGRG	1 cut(s)	1130
AvaII	GGWCC	2 cut(s)	626, 781
BanI	GGYRCC	1 cut(s)	691
BanII	GRGCYC	1 cut(s)	423
BauI	CACGAG	1 cut(s)	1467
Bbv12I	GWGCWC	1 cut(s)	732
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	7 cut(s)	482, 547, 584, 799, 874, 913, 1317
BciT130I	CCWGG	3 cut(s)	261, 513, 630
BciVI	GTATCC	1 cut(s)	761
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	3 cut(s)	1116, 1171, 1363
BfaI	CTAG	1 cut(s)	1110
BfuAI	ACCTGC	2 cut(s)	596, 1153
BfuI	GTATCC	1 cut(s)	761
BisI	GCNGC	2 cut(s)	10, 219
BlsI	GCNGC	2 cut(s)	11, 220
Bme1390I	CCNGG	4 cut(s)	156, 261, 513, 630
Bme18I	GGWCC	2 cut(s)	626, 781
BmeT110I	CYCGRG	1 cut(s)	1130
BmgT120I	GGNCC	2 cut(s)	626, 781
BmiI	GGNNCC	3 cut(s)	627, 693, 783
BmrFI	CCNGG	4 cut(s)	156, 261, 513, 630
BmrI	ACTGGG	2 cut(s)	558, 1065
BmsI	GCATC	3 cut(s)	94, 205, 596
BmuI	ACTGGG	2 cut(s)	558, 1065
BplI	GAGNNNNNCTC	4 cut(s)	1113, 1145, 1151, 1183
BpmI	CTGGAG	1 cut(s)	282
Bpu10I	CCTNAGC	2 cut(s)	340, 1297
BpuEI	CTTGAG	2 cut(s)	73, 1070
BpuMI	CCSGG	1 cut(s)	156
BsaI	GGTCTC	2 cut(s)	1116, 1171
BsaJI	CCNNGG	7 cut(s)	155, 511, 512, 542, 745, 813, 1356
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
Bsc4I	CCNNNNNNNGG	8 cut(s)	548, 600, 1009, 1132, 1298, 1299, 1342, 1432
Bse118I	RCCGGY	1 cut(s)	642
Bse1I	ACTGG	3 cut(s)	51, 553, 1060
Bse3DI	GCAATG	2 cut(s)	963, 1079
BseBI	CCWGG	3 cut(s)	261, 513, 630
BseDI	CCNNGG	7 cut(s)	155, 511, 512, 542, 745, 813, 1356
BseGI	GGATG	5 cut(s)	220, 558, 885, 1267, 1441
BseLI	CCNNNNNNNGG	8 cut(s)	548, 600, 1009, 1132, 1298, 1299, 1342, 1432
BseMI	GCAATG	2 cut(s)	963, 1079
BseMII	CTCAG	5 cut(s)	99, 387, 663, 1311, 1322
BseNI	ACTGG	3 cut(s)	51, 553, 1060
BsePI	GCGCGC	2 cut(s)	1105, 1480
BseXI	GCAGC	1 cut(s)	230
BseYI	CCCAGC	1 cut(s)	1292
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	2 cut(s)	1107, 1482
BshFI	GGCC	2 cut(s)	884, 1199
BshNI	GGYRCC	1 cut(s)	691
BsiHKAI	GWGCWC	1 cut(s)	732
BsiHKCI	CYCGRG	1 cut(s)	1130
BsiSI	CCGG	2 cut(s)	155, 643
BslFI	GGGAC	3 cut(s)	357, 358, 1149
BslI	CCNNNNNNNGG	8 cut(s)	548, 600, 1009, 1132, 1298, 1299, 1342, 1432
BsmAI	GTCTC	3 cut(s)	1116, 1171, 1363
BsmFI	GGGAC	3 cut(s)	357, 358, 1149
BsmI	GAATGC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	884, 1199
Bso31I	GGTCTC	2 cut(s)	1116, 1171
BsoBI	CYCGRG	1 cut(s)	1130
Bsp1286I	GDGCHC	2 cut(s)	423, 732
Bsp143I	GATC	7 cut(s)	70, 492, 611, 757, 898, 954, 1069
BspACI	CCGC	6 cut(s)	9, 308, 785, 1227, 1271, 1415
BspANI	GGCC	2 cut(s)	884, 1199
BspCNI	CTCAG	5 cut(s)	100, 388, 664, 1310, 1321
BspFNI	CGCG	2 cut(s)	1107, 1482
BspLI	GGNNCC	3 cut(s)	627, 693, 783
BspMI	ACCTGC	2 cut(s)	596, 1153
BspPI	GGATC	2 cut(s)	500, 893
BspT107I	GGYRCC	1 cut(s)	691
BspTNI	GGTCTC	2 cut(s)	1116, 1171
BsrDI	GCAATG	2 cut(s)	963, 1079
BsrFI	RCCGGY	1 cut(s)	642
BsrI	ACTGG	3 cut(s)	51, 553, 1060
BssAI	RCCGGY	1 cut(s)	642
BssECI	CCNNGG	7 cut(s)	155, 511, 512, 542, 745, 813, 1356
BssHII	GCGCGC	2 cut(s)	1105, 1480
BssMI	GATC	7 cut(s)	70, 492, 611, 757, 898, 954, 1069
BssSI	CACGAG	1 cut(s)	1467
BssT1I	CCWWGG	4 cut(s)	542, 745, 813, 1356
Bst2BI	CACGAG	1 cut(s)	1467
Bst2UI	CCWGG	3 cut(s)	261, 513, 630
Bst4CI	ACNGT	6 cut(s)	691, 822, 1004, 1041, 1261, 1279
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstC8I	GCNNGC	2 cut(s)	1107, 1482
BstDEI	CTNAG	9 cut(s)	108, 340, 396, 672, 833, 912, 1297, 1308, 1488
BstF5I	GGATG	5 cut(s)	220, 558, 885, 1267, 1441
BstFNI	CGCG	2 cut(s)	1107, 1482
BstHHI	GCGC	4 cut(s)	1107, 1109, 1482, 1484
BstKTI	GATC	7 cut(s)	73, 495, 614, 760, 901, 957, 1072
BstMAI	GTCTC	3 cut(s)	1116, 1171, 1363
BstMBI	GATC	7 cut(s)	70, 492, 611, 757, 898, 954, 1069
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 836, 1034
BstNI	CCWGG	3 cut(s)	261, 513, 630
BstSCI	CCNGG	4 cut(s)	154, 259, 511, 628
BstUI	CGCG	2 cut(s)	1107, 1482
BstV1I	GCAGC	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	761
BsuRI	GGCC	2 cut(s)	884, 1199
BtgZI	GCGATG	1 cut(s)	1060
BtsCI	GGATG	5 cut(s)	220, 558, 885, 1267, 1441
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	3 cut(s)	124, 233, 1053
BveI	ACCTGC	2 cut(s)	596, 1153
Cac8I	GCNNGC	2 cut(s)	1107, 1482
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	4 cut(s)	1107, 1109, 1482, 1484
Cfr10I	RCCGGY	1 cut(s)	642
Cfr13I	GGNCC	2 cut(s)	626, 781
Csp6I	GTAC	2 cut(s)	692, 937
CviAII	CATG	7 cut(s)	17, 245, 733, 755, 973, 1025, 1337
CviQI	GTAC	2 cut(s)	692, 937
DdeI	CTNAG	9 cut(s)	108, 340, 396, 672, 833, 912, 1297, 1308, 1488
DpnI	GATC	7 cut(s)	72, 494, 613, 759, 900, 956, 1071
DpnII	GATC	7 cut(s)	70, 492, 611, 757, 898, 954, 1069
DraIII	CACNNNGTG	1 cut(s)	836
DrdI	GACNNNNNNGTC	1 cut(s)	1019
DseDI	GACNNNNNNGTC	1 cut(s)	1019
EaeI	YGGCCR	1 cut(s)	882
Eco130I	CCWWGG	4 cut(s)	542, 745, 813, 1356
Eco24I	GRGCYC	1 cut(s)	423
Eco31I	GGTCTC	2 cut(s)	1116, 1171
Eco47I	GGWCC	2 cut(s)	626, 781
Eco57I	CTGAAG	2 cut(s)	450, 1406
Eco88I	CYCGRG	1 cut(s)	1130
EcoO109I	RGGNCCY	1 cut(s)	626
EcoRII	CCWGG	3 cut(s)	259, 511, 628
EcoT14I	CCWWGG	4 cut(s)	542, 745, 813, 1356
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	4 cut(s)	542, 745, 813, 1356
FaeI	CATG	7 cut(s)	20, 248, 736, 758, 976, 1028, 1340
FaqI	GGGAC	3 cut(s)	357, 358, 1149
FatI	CATG	7 cut(s)	16, 244, 732, 754, 972, 1024, 1336
FauI	CCCGC	1 cut(s)	792
FblI	GTMKAC	1 cut(s)	874
Fnu4HI	GCNGC	2 cut(s)	10, 219
FokI	GGATG	5 cut(s)	227, 565, 892, 1254, 1448
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	2 cut(s)	10, 219
FspBI	CTAG	1 cut(s)	1110
GlaI	GCGC	4 cut(s)	1106, 1108, 1481, 1483
GluI	GCNGC	2 cut(s)	10, 219
GsaI	CCCAGC	1 cut(s)	1296
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	884, 1199
HapII	CCGG	2 cut(s)	155, 643
HhaI	GCGC	4 cut(s)	1107, 1109, 1482, 1484
Hin1II	CATG	7 cut(s)	20, 248, 736, 758, 976, 1028, 1340
Hin6I	GCGC	4 cut(s)	1105, 1107, 1480, 1482
HinP1I	GCGC	4 cut(s)	1105, 1107, 1480, 1482
HincII	GTYRAC	1 cut(s)	861
HindII	GTYRAC	1 cut(s)	861
HinfI	GANTC	4 cut(s)	131, 557, 1137, 1445
HpaII	CCGG	2 cut(s)	155, 643
HphI	GGTGA	1 cut(s)	866
Hpy166II	GTNNAC	3 cut(s)	861, 875, 1282
Hpy188I	TCNGA	4 cut(s)	600, 796, 931, 949
Hpy188III	TCNNGA	6 cut(s)	280, 290, 896, 1093, 1153, 1175
Hpy8I	GTNNAC	3 cut(s)	861, 875, 1282
HpyAV	CCTTC	3 cut(s)	425, 1189, 1469
HpyCH4III	ACNGT	6 cut(s)	691, 822, 1004, 1041, 1261, 1279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 836, 1034
HpyF3I	CTNAG	9 cut(s)	108, 340, 396, 672, 833, 912, 1297, 1308, 1488
Hsp92II	CATG	7 cut(s)	20, 248, 736, 758, 976, 1028, 1340
HspAI	GCGC	4 cut(s)	1105, 1107, 1480, 1482
KpnI	GGTACC	1 cut(s)	695
Kzo9I	GATC	7 cut(s)	70, 492, 611, 757, 898, 954, 1069
LmnI	GCTCC	4 cut(s)	142, 577, 1247, 1417
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	3 cut(s)	94, 205, 596
MaeI	CTAG	1 cut(s)	1110
MaeIII	GTNAC	3 cut(s)	226, 247, 1375
MalI	GATC	7 cut(s)	72, 494, 613, 759, 900, 956, 1071
MboI	GATC	7 cut(s)	70, 492, 611, 757, 898, 954, 1069
MboII	GAAGA	4 cut(s)	305, 323, 692, 1454
MfeI	CAATTG	1 cut(s)	222
MhlI	GDGCHC	2 cut(s)	423, 732
MlyI	GAGTC	2 cut(s)	566, 1131
MseI	TTAA	2 cut(s)	75, 842
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	2 cut(s)	155, 643
MspR9I	CCNGG	4 cut(s)	156, 261, 513, 630
MunI	CAATTG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	12
MvaI	CCWGG	3 cut(s)	261, 513, 630
MvnI	CGCG	2 cut(s)	1107, 1482
MwoI	GCNNNNNNNGC	3 cut(s)	200, 836, 1034
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	7 cut(s)	70, 492, 611, 757, 898, 954, 1069
NlaIII	CATG	7 cut(s)	20, 248, 736, 758, 976, 1028, 1340
NlaIV	GGNNCC	3 cut(s)	627, 693, 783
NmeAIII	GCCGAG	2 cut(s)	382, 910
NmuCI	GTSAC	1 cut(s)	247
PaeR7I	CTCGAG	1 cut(s)	1130
PasI	CCCWGGG	1 cut(s)	512
PauI	GCGCGC	2 cut(s)	1105, 1480
PctI	GAATGC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	131, 1445
PflMI	CCANNNNNTGG	2 cut(s)	548, 1342
PfoI	TCCNGGA	1 cut(s)	628
PkrI	GCNGC	2 cut(s)	11, 220
PleI	GAGTC	2 cut(s)	565, 1131
PpsI	GAGTC	2 cut(s)	565, 1131
PpuMI	RGGWCCY	1 cut(s)	626
PsiI	TTATAA	1 cut(s)	1190
Psp5II	RGGWCCY	1 cut(s)	626
Psp6I	CCWGG	3 cut(s)	259, 511, 628
PspFI	CCCAGC	1 cut(s)	1292
PspGI	CCWGG	3 cut(s)	259, 511, 628
PspN4I	GGNNCC	3 cut(s)	627, 693, 783
PspPI	GGNCC	2 cut(s)	626, 781
PspPPI	RGGWCCY	1 cut(s)	626
PspXI	VCTCGAGB	1 cut(s)	1130
PstNI	CAGNNNCTG	1 cut(s)	203
PteI	GCGCGC	2 cut(s)	1105, 1480
RsaI	GTAC	2 cut(s)	693, 938
RsaNI	GTAC	2 cut(s)	692, 937
SaqAI	TTAA	2 cut(s)	75, 842
SatI	GCNGC	2 cut(s)	10, 219
Sau3AI	GATC	7 cut(s)	70, 492, 611, 757, 898, 954, 1069
Sau96I	GGNCC	2 cut(s)	626, 781
SchI	GAGTC	2 cut(s)	566, 1131
ScrFI	CCNGG	4 cut(s)	156, 261, 513, 630
SduI	GDGCHC	2 cut(s)	423, 732
SfaNI	GCATC	3 cut(s)	94, 205, 596
Sfr274I	CTCGAG	1 cut(s)	1130
SinI	GGWCC	2 cut(s)	626, 781
SlaI	CTCGAG	1 cut(s)	1130
SmlI	CTYRAG	3 cut(s)	88, 1085, 1130
SmoI	CTYRAG	3 cut(s)	88, 1085, 1130
SsiI	CCGC	6 cut(s)	9, 308, 785, 1227, 1271, 1415
SspI	AATATT	2 cut(s)	318, 996
SspMI	CTAG	1 cut(s)	1110
StyD4I	CCNGG	4 cut(s)	154, 259, 511, 628
StyI	CCWWGG	4 cut(s)	542, 745, 813, 1356
TaaI	ACNGT	6 cut(s)	691, 822, 1004, 1041, 1261, 1279
TaqI	TCGA	5 cut(s)	58, 64, 610, 1131, 1152
TatI	WGTACW	1 cut(s)	936
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	131, 1445
Tru1I	TTAA	2 cut(s)	75, 842
Tru9I	TTAA	2 cut(s)	75, 842
TscAI	CASTG	3 cut(s)	124, 240, 1060
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	4 cut(s)	5, 17, 542, 1115
TspGWI	ACGGA	1 cut(s)	892
TspRI	CASTG	3 cut(s)	124, 240, 1060
Van91I	CCANNNNNTGG	2 cut(s)	548, 1342
VpaK11BI	GGWCC	2 cut(s)	626, 781
XapI	RAATTY	3 cut(s)	150, 411, 1045
XhoI	CTCGAG	1 cut(s)	1130
XmiI	GTMKAC	1 cut(s)	874
XspI	CTAG	1 cut(s)	1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.